Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.53940 * 113.74590 * 271.67685 * 15 14 13 17 17 N 1.47579 * 86.11747 * 222.04404 * 16 15 14 18 18 C 1.34776 * 134.49193 * 204.63720 * 17 16 15 19 19 O 1.21281 * 120.00306 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.99947 * 0.02562 * 18 17 16 21 21 H 1.09006 * 115.51162 * 34.62971 * 20 18 17 22 22 C 1.53000 * 117.43702 * 179.97438 * 20 18 17 23 23 H 1.09004 * 119.80371 * 355.36792 * 22 20 18 24 24 C 1.54471 * 118.07231 * 199.10217 * 22 20 18 25 25 O 1.44423 * 104.80309 * 321.13033 * 24 22 20 26 26 C 1.44420 * 105.27430 * 319.48808 * 25 24 22 27 27 C 1.52996 * 117.43355 * 249.34730 * 20 18 17 28 28 H 1.09003 * 119.81131 * 4.63328 * 27 20 18 29 29 C 1.47581 * 91.01399 * 24.63846 * 17 16 15 30 30 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 32 32 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 33 33 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 34 34 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 35 35 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 36 36 H 1.09009 * 112.94206 * 43.40662 * 15 14 13 37 37 H 1.09000 * 113.76604 * 336.34496 * 16 15 14 38 38 H 1.08998 * 113.77101 * 107.74050 * 16 15 14 39 39 H 1.09004 * 110.37177 * 79.95908 * 24 22 20 40 40 H 1.08998 * 110.37853 * 202.29666 * 24 22 20 41 41 H 1.09001 * 110.37265 * 159.34368 * 26 25 24 42 42 H 1.09005 * 110.36954 * 281.56653 * 26 25 24 43 43 H 1.08997 * 113.76460 * 221.05697 * 29 17 16 44 44 H 1.09000 * 113.87296 * 89.67668 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 4.0035 -9.0581 -1.4491 17 7 4.0957 -10.4452 -0.9537 18 6 4.8211 -11.5263 -1.3020 19 8 4.6845 -12.5688 -0.6975 20 6 5.8029 -11.4396 -2.4420 21 1 6.3115 -10.4817 -2.5517 22 6 6.5958 -12.7017 -2.7872 23 1 6.4930 -13.5925 -2.1674 24 6 7.8916 -12.5431 -3.6130 25 8 7.5880 -11.5165 -4.5823 26 6 6.2390 -11.7918 -5.0183 27 6 5.4675 -12.2089 -3.7213 28 1 4.5125 -12.7274 -3.8072 29 6 3.0745 -10.1729 0.0764 30 1 -0.4849 0.8401 0.0004 31 1 3.1244 -3.7267 -0.9039 32 1 3.1244 -3.7361 0.8761 33 1 3.8007 -6.1835 -0.0260 34 1 1.7212 -7.8796 0.8553 35 1 1.7219 -7.8705 -0.9248 36 1 4.2964 -8.4167 0.6526 37 1 3.2557 -8.9193 -2.2299 38 1 4.9679 -8.6157 -1.6986 39 1 8.7143 -12.2276 -2.9712 40 1 8.1384 -13.4783 -4.1154 41 1 5.7921 -10.8993 -5.4562 42 1 6.2324 -12.6106 -5.7378 43 1 3.2973 -10.6206 1.0449 44 1 2.0532 -10.3613 -0.2544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284950763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -72.062368 kcal Electronic energy + Delta-G solvation = -25664.334996 eV Core-core repulsion = 21709.334560 eV Total energy + Delta-G solvation = -3955.000435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93328 -41.03236 -40.31022 -38.91300 -35.66710 -35.41756 -34.55614 -32.17627 -30.53919 -29.62524 -28.01568 -27.60908 -27.15629 -26.13076 -22.93345 -21.88932 -21.73200 -21.28077 -19.99618 -19.76843 -18.63439 -17.77675 -17.57664 -17.47301 -16.92909 -16.85316 -16.59505 -16.47450 -16.10749 -16.02683 -15.70881 -15.35207 -14.72282 -14.55042 -14.49036 -14.22831 -14.04033 -13.62641 -13.56092 -13.52975 -13.14033 -13.04163 -12.84511 -12.77948 -12.61366 -12.57531 -12.38755 -11.89671 -11.71582 -11.45896 -11.28186 -11.10470 -11.03918 -10.89656 -10.63429 -10.23843 -10.06131 -9.84381 -8.63171 -8.32153 -6.09617 1.24594 1.30023 1.45599 1.49245 1.57086 1.61825 1.67475 2.27737 2.32842 2.48618 2.80979 3.01995 3.23308 3.33007 3.38082 3.50956 3.62172 3.73441 3.78651 3.86222 3.98786 4.09965 4.19078 4.23499 4.35990 4.39935 4.47762 4.53154 4.57345 4.57500 4.64132 4.71518 4.74295 4.75735 4.81957 4.82674 4.83322 4.97984 5.19515 5.44334 5.48314 5.70187 6.22114 6.51954 6.57471 6.96104 7.09372 7.30794 8.76590 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.001694 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.544252 B =16521.886750 C =17570.130739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.132 3.868 15 C -0.114 4.114 16 C 0.108 3.892 17 N -0.643 5.643 18 C 0.562 3.438 19 O -0.586 6.586 20 C -0.148 4.148 21 H 0.135 0.865 22 C -0.173 4.173 23 H 0.124 0.876 24 C 0.074 3.926 25 O -0.391 6.391 26 C 0.073 3.927 27 C -0.163 4.163 28 H 0.131 0.869 29 C 0.111 3.889 30 H 0.270 0.730 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.418 0.582 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.283 -25.335 -7.377 31.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.008 3.992 15 C -0.133 4.133 16 C -0.013 4.013 17 N -0.376 5.376 18 C 0.353 3.647 19 O -0.467 6.467 20 C -0.169 4.169 21 H 0.152 0.848 22 C -0.192 4.192 23 H 0.142 0.858 24 C -0.002 4.002 25 O -0.310 6.310 26 C -0.003 4.003 27 C -0.182 4.182 28 H 0.149 0.851 29 C -0.012 4.012 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.256 0.744 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.349 -26.149 -7.201 31.164 hybrid contribution 1.419 1.008 0.368 1.779 sum 16.768 -25.141 -6.833 30.983 Atomic orbital electron populations 1.70181 1.07952 1.28592 1.48041 1.26118 0.95948 1.03300 0.93833 0.85025 0.77805 0.75811 0.79496 1.18607 1.20591 1.18711 1.23182 0.95372 0.92052 1.58770 0.89822 1.85586 1.10782 0.99292 1.97054 1.23382 1.03427 0.94446 1.06910 1.20010 0.86200 0.86664 0.75108 1.90704 1.17542 1.86105 1.50182 1.45674 1.10359 1.04849 1.75551 1.21299 0.95785 0.79351 1.02770 1.23255 0.98380 0.93034 0.98618 1.23621 1.03604 0.77442 0.96651 1.49963 1.39732 1.11818 1.36121 1.19545 0.80522 0.81288 0.83333 1.90688 1.69547 1.30293 1.56142 1.21960 1.00648 0.99515 0.94748 0.84758 1.24071 0.94641 0.98118 1.02367 0.85767 1.23103 0.95313 0.92728 0.89092 1.89172 1.31009 1.51199 1.59604 1.23479 0.80519 1.03066 0.93227 1.24570 1.00532 1.02918 0.90190 0.85090 1.23286 0.92886 0.92412 0.92582 0.92069 0.86991 0.87220 0.74435 0.91470 0.91187 0.85552 0.88082 0.87504 0.87604 0.89024 0.87248 0.89089 0.89731 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.55 -30.39 9.50 67.96 0.65 -29.75 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -4.76 6.16 71.23 0.44 -4.33 16 11 C 0.53 17.62 7.85 87.66 0.69 18.31 16 12 O -0.57 -24.47 15.86 -3.02 -0.05 -24.52 16 13 N -0.71 -13.90 5.56 -463.06 -2.57 -16.47 16 14 C 0.13 2.09 5.53 86.38 0.48 2.57 16 15 C -0.11 -1.08 3.94 -10.14 -0.04 -1.12 16 16 C 0.11 0.96 8.17 86.48 0.71 1.67 16 17 N -0.64 -9.53 3.61 -836.67 -3.02 -12.55 16 18 C 0.56 11.08 7.84 87.66 0.69 11.76 16 19 O -0.59 -16.35 17.07 -3.03 -0.05 -16.40 16 20 C -0.15 -2.13 5.28 -11.54 -0.06 -2.19 16 21 H 0.13 1.67 8.04 -2.38 -0.02 1.65 16 22 C -0.17 -2.30 6.64 -9.77 -0.06 -2.37 16 23 H 0.12 1.94 7.81 -2.38 -0.02 1.92 16 24 C 0.07 0.75 7.53 72.48 0.55 1.29 16 25 O -0.39 -5.27 11.30 -148.98 -1.68 -6.96 16 26 C 0.07 0.68 7.57 73.23 0.55 1.23 16 27 C -0.16 -1.92 7.13 -9.02 -0.06 -1.99 16 28 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 29 C 0.11 1.41 8.40 86.48 0.73 2.14 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 32 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 33 H 0.42 5.14 8.47 -92.71 -0.79 4.36 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.07 1.22 7.84 -2.38 -0.02 1.20 16 36 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.10 0.83 7.89 -2.39 -0.02 0.81 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.10 1.15 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -83.69 388.91 -0.28 -83.98 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.23 Total: 14.19 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.71 Total: -1.60 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -5.30 Total: -83.98 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -1.78 Total: -47.88 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -83.69 -0.28 -83.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284950763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.913 kcal (2) G-P(sol) polarization free energy of solvation -83.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds