Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48502 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46808 * 299.99928 * 3 2 1 6 6 H 1.48496 * 109.47070 * 60.00004 * 3 2 1 7 7 C 1.38795 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00598 * 179.97438 * 7 2 1 9 9 S 1.76206 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.80991 * 100.00146 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47476 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99408 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00442 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00015 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46915 * 179.97438 * 14 13 11 16 16 C 1.31005 * 119.99776 * 125.00274 * 15 14 13 17 17 C 1.50702 * 119.99932 * 180.27660 * 16 15 14 18 18 N 1.46500 * 109.47089 * 124.72256 * 17 16 15 19 19 C 1.34774 * 119.99908 * 180.02562 * 18 17 16 20 20 O 1.21286 * 119.99840 * 359.97438 * 19 18 17 21 21 C 1.50703 * 120.00043 * 180.02562 * 19 18 17 22 22 C 1.53000 * 119.80466 * 250.97917 * 21 19 18 23 23 C 1.52998 * 60.65363 * 247.68799 * 22 21 19 24 24 H 1.09004 * 120.24359 * 112.13904 * 23 22 21 25 25 C 1.54473 * 118.06841 * 269.59387 * 23 22 21 26 26 O 1.44421 * 104.80284 * 86.82548 * 25 23 22 27 27 C 1.43861 * 105.57232 * 319.94585 * 26 25 23 28 28 H 0.96993 * 120.00078 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47571 * 59.99807 * 10 9 7 30 30 H 1.09004 * 109.47390 * 299.99803 * 10 9 7 31 31 H 0.97006 * 119.99902 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47251 * 59.99732 * 14 13 11 33 33 H 1.08994 * 109.46778 * 299.99704 * 14 13 11 34 34 H 1.08002 * 120.00511 * 305.00212 * 15 14 13 35 35 H 1.08002 * 119.99708 * 359.97438 * 16 15 14 36 36 H 1.09002 * 109.47005 * 244.72313 * 17 16 15 37 37 H 1.08999 * 109.47073 * 4.72010 * 17 16 15 38 38 H 0.96998 * 119.99957 * 359.97438 * 18 17 16 39 39 H 1.08997 * 117.43688 * 355.36875 * 22 21 19 40 40 H 1.09003 * 117.43119 * 140.01046 * 22 21 19 41 41 H 1.08997 * 110.37279 * 205.65972 * 25 23 22 42 42 H 1.09000 * 110.37304 * 327.99605 * 25 23 22 43 43 H 1.09004 * 109.55842 * 281.16889 * 27 26 25 44 44 H 1.08999 * 110.92853 * 159.01570 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0008 15 6 3.4849 -8.6837 -0.0009 16 6 3.5685 -9.6033 0.9284 17 6 4.7262 -10.5680 0.9319 18 7 5.4034 -10.5134 2.2298 19 6 6.4756 -11.2958 2.4640 20 8 6.8794 -12.0454 1.6003 21 6 7.1719 -11.2400 3.7993 22 6 8.5601 -10.6059 3.9072 23 6 8.4047 -12.1121 4.1264 24 1 8.8269 -12.8175 3.4106 25 6 8.1390 -12.6139 5.5629 26 8 6.7043 -12.5506 5.7165 27 6 6.3004 -11.3297 5.0716 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8906 31 1 3.8011 -6.1835 -0.0004 32 1 1.7221 -7.8753 -0.8910 33 1 1.7216 -7.8750 0.8890 34 1 4.2435 -8.6198 -0.7671 35 1 2.8101 -9.6669 1.6947 36 1 4.3575 -11.5787 0.7567 37 1 5.4284 -10.2958 0.1439 38 1 5.0806 -9.9136 2.9204 39 1 9.0363 -10.2793 2.9827 40 1 8.7639 -9.9894 4.7828 41 1 8.4879 -13.6402 5.6769 42 1 8.6273 -11.9635 6.2885 43 1 6.5025 -10.4850 5.7303 44 1 5.2437 -11.3607 4.8063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285482046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -68.226843 kcal Electronic energy + Delta-G solvation = -25051.353092 eV Core-core repulsion = 21096.518978 eV Total energy + Delta-G solvation = -3954.834115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42399 -39.40404 -39.19297 -36.75124 -35.25598 -34.93908 -32.96691 -32.45487 -30.10664 -29.40836 -27.64533 -26.03567 -25.53465 -24.58661 -22.97709 -21.68355 -20.87195 -20.45446 -19.67309 -18.14007 -17.90386 -16.76915 -16.55437 -16.24201 -16.12833 -15.94856 -15.63055 -15.30762 -15.23579 -14.83043 -14.70394 -14.19474 -14.03806 -13.85415 -13.80067 -13.31822 -13.14117 -12.86038 -12.77207 -12.57180 -12.47050 -11.89516 -11.82924 -11.60331 -11.37512 -11.09363 -11.04847 -10.90268 -10.78637 -10.50352 -10.17114 -9.99480 -9.83329 -9.57412 -9.36308 -9.10523 -8.93852 -8.26538 -6.53193 -6.24511 -3.95310 1.42035 1.96168 2.65279 2.83395 3.03425 3.05365 3.19485 3.26879 3.32066 3.38500 3.72837 3.73354 3.82738 4.11973 4.17538 4.20659 4.34228 4.38398 4.55609 4.69201 4.88515 4.97572 4.98706 5.01454 5.03844 5.10742 5.10853 5.17563 5.19610 5.24725 5.38120 5.47969 5.52182 5.72220 5.81954 5.84873 6.08569 6.09686 6.10478 6.19917 6.53805 6.95817 7.57163 7.63473 7.68812 8.32698 8.54405 9.21014 10.82985 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.001545 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.336562 B =18118.656575 C =19129.625309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.147 3.853 15 C -0.138 4.138 16 C -0.167 4.167 17 C 0.150 3.850 18 N -0.721 5.721 19 C 0.562 3.438 20 O -0.535 6.535 21 C -0.215 4.215 22 C -0.105 4.105 23 C -0.157 4.157 24 H 0.133 0.867 25 C 0.072 3.928 26 O -0.367 6.367 27 C 0.087 3.913 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.405 0.595 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.805 -24.552 8.845 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.392 5.392 14 C 0.023 3.977 15 C -0.158 4.158 16 C -0.186 4.186 17 C 0.027 3.973 18 N -0.372 5.372 19 C 0.348 3.652 20 O -0.412 6.412 21 C -0.218 4.218 22 C -0.142 4.142 23 C -0.175 4.175 24 H 0.151 0.849 25 C -0.005 4.005 26 O -0.286 6.286 27 C 0.010 3.990 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.239 0.761 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.744 -25.501 8.312 31.100 hybrid contribution 2.305 1.756 0.024 2.898 sum 18.049 -23.745 8.336 30.969 Atomic orbital electron populations 1.70025 1.05954 1.27383 1.46890 1.24996 0.95031 0.99051 0.94515 0.86112 0.79569 0.81860 0.77923 1.19623 1.20550 1.20553 1.22908 0.94946 0.91617 1.58913 0.90854 1.85411 1.04895 0.96373 1.96720 1.23529 1.06613 0.95259 1.04972 1.20346 0.86504 0.86282 0.75097 1.90711 1.15366 1.85564 1.47446 1.45975 1.10065 1.05019 1.78098 1.20298 0.94113 0.80262 1.03005 1.23080 0.98816 0.95246 0.98612 1.22907 0.98636 0.97017 1.00049 1.20373 0.92343 0.99394 0.85188 1.45894 1.30935 1.43323 1.17061 1.19050 0.79735 0.79451 0.86984 1.90729 1.65118 1.39061 1.46284 1.23344 0.91240 1.11765 0.95483 1.23187 0.92360 0.94196 1.04488 1.24379 0.99654 0.94609 0.98897 0.84924 1.23022 0.81862 1.02727 0.92876 1.89100 1.21206 1.41137 1.77115 1.22736 0.98717 0.88172 0.89421 0.92209 0.89187 0.89173 0.76699 0.90431 0.90988 0.86258 0.86023 0.90311 0.90761 0.76077 0.87065 0.87314 0.87950 0.91281 0.90949 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.52 7.85 -10.99 -0.09 9.43 16 12 O -0.52 -11.43 15.86 5.55 0.09 -11.34 16 13 N -0.74 -9.05 5.55 -61.47 -0.34 -9.39 16 14 C 0.15 1.51 6.11 -5.19 -0.03 1.48 16 15 C -0.14 -0.97 9.24 -36.03 -0.33 -1.31 16 16 C -0.17 -1.02 9.24 -36.03 -0.33 -1.36 16 17 C 0.15 1.01 6.11 -5.19 -0.03 0.98 16 18 N -0.72 -4.72 5.44 -61.47 -0.33 -5.05 16 19 C 0.56 4.98 7.42 -10.99 -0.08 4.90 16 20 O -0.54 -6.83 16.85 5.55 0.09 -6.74 16 21 C -0.21 -1.41 2.84 -154.09 -0.44 -1.85 16 22 C -0.11 -0.50 9.89 -26.73 -0.26 -0.76 16 23 C -0.16 -0.94 6.90 -89.06 -0.61 -1.56 16 24 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 25 C 0.07 0.38 7.45 37.93 0.28 0.66 16 26 O -0.37 -2.93 11.62 -35.23 -0.41 -3.34 16 27 C 0.09 0.50 7.09 37.93 0.27 0.77 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 31 H 0.40 3.74 8.46 -40.82 -0.35 3.40 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 34 H 0.12 0.73 7.84 -52.49 -0.41 0.32 16 35 H 0.12 0.68 7.84 -52.49 -0.41 0.27 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 38 H 0.40 1.78 8.27 -40.82 -0.34 1.44 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.51 7.88 -51.93 -0.41 0.10 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -37.44 394.68 -9.19 -46.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.50 Total: 0.34 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.24 Total: -4.17 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.06 Total: -39.62 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.23 Total: -21.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.44 -9.19 -46.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285482046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.593 kcal (2) G-P(sol) polarization free energy of solvation -37.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds