Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48502 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46808 * 299.99928 * 3 2 1 6 6 H 1.48496 * 109.47070 * 60.00004 * 3 2 1 7 7 C 1.38795 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00598 * 179.97438 * 7 2 1 9 9 S 1.76206 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.80991 * 100.00146 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47476 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99408 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00442 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00015 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46915 * 179.97438 * 14 13 11 16 16 C 1.31005 * 119.99776 * 125.00274 * 15 14 13 17 17 C 1.50702 * 119.99932 * 180.27660 * 16 15 14 18 18 N 1.46500 * 109.47089 * 124.72256 * 17 16 15 19 19 C 1.34774 * 119.99908 * 180.02562 * 18 17 16 20 20 O 1.21286 * 119.99840 * 359.97438 * 19 18 17 21 21 C 1.50703 * 120.00043 * 180.02562 * 19 18 17 22 22 C 1.53000 * 119.80466 * 250.97917 * 21 19 18 23 23 C 1.52998 * 60.65363 * 247.68799 * 22 21 19 24 24 H 1.09004 * 120.24359 * 112.13904 * 23 22 21 25 25 C 1.54473 * 118.06841 * 269.59387 * 23 22 21 26 26 O 1.44421 * 104.80284 * 86.82548 * 25 23 22 27 27 C 1.43861 * 105.57232 * 319.94585 * 26 25 23 28 28 H 0.96993 * 120.00078 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47571 * 59.99807 * 10 9 7 30 30 H 1.09004 * 109.47390 * 299.99803 * 10 9 7 31 31 H 0.97006 * 119.99902 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47251 * 59.99732 * 14 13 11 33 33 H 1.08994 * 109.46778 * 299.99704 * 14 13 11 34 34 H 1.08002 * 120.00511 * 305.00212 * 15 14 13 35 35 H 1.08002 * 119.99708 * 359.97438 * 16 15 14 36 36 H 1.09002 * 109.47005 * 244.72313 * 17 16 15 37 37 H 1.08999 * 109.47073 * 4.72010 * 17 16 15 38 38 H 0.96998 * 119.99957 * 359.97438 * 18 17 16 39 39 H 1.08997 * 117.43688 * 355.36875 * 22 21 19 40 40 H 1.09003 * 117.43119 * 140.01046 * 22 21 19 41 41 H 1.08997 * 110.37279 * 205.65972 * 25 23 22 42 42 H 1.09000 * 110.37304 * 327.99605 * 25 23 22 43 43 H 1.09004 * 109.55842 * 281.16889 * 27 26 25 44 44 H 1.08999 * 110.92853 * 159.01570 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0008 15 6 3.4849 -8.6837 -0.0009 16 6 3.5685 -9.6033 0.9284 17 6 4.7262 -10.5680 0.9319 18 7 5.4034 -10.5134 2.2298 19 6 6.4756 -11.2958 2.4640 20 8 6.8794 -12.0454 1.6003 21 6 7.1719 -11.2400 3.7993 22 6 8.5601 -10.6059 3.9072 23 6 8.4047 -12.1121 4.1264 24 1 8.8269 -12.8175 3.4106 25 6 8.1390 -12.6139 5.5629 26 8 6.7043 -12.5506 5.7165 27 6 6.3004 -11.3297 5.0716 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8906 31 1 3.8011 -6.1835 -0.0004 32 1 1.7221 -7.8753 -0.8910 33 1 1.7216 -7.8750 0.8890 34 1 4.2435 -8.6198 -0.7671 35 1 2.8101 -9.6669 1.6947 36 1 4.3575 -11.5787 0.7567 37 1 5.4284 -10.2958 0.1439 38 1 5.0806 -9.9136 2.9204 39 1 9.0363 -10.2793 2.9827 40 1 8.7639 -9.9894 4.7828 41 1 8.4879 -13.6402 5.6769 42 1 8.6273 -11.9635 6.2885 43 1 6.5025 -10.4850 5.7303 44 1 5.2437 -11.3607 4.8063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285482046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -96.888918 kcal Electronic energy + Delta-G solvation = -25052.595973 eV Core-core repulsion = 21096.518978 eV Total energy + Delta-G solvation = -3956.076995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93124 -40.61425 -39.95573 -37.52159 -35.97485 -35.65904 -34.57874 -33.87386 -31.26228 -30.08430 -28.50553 -27.63422 -26.44903 -25.36195 -23.58521 -22.10675 -21.87628 -21.33519 -20.38243 -19.76115 -18.65270 -17.85473 -17.42818 -17.31269 -16.87515 -16.74150 -16.68423 -16.50608 -16.10561 -15.93817 -15.73415 -15.29031 -15.03958 -14.83109 -14.50166 -14.39264 -14.23747 -13.82439 -13.69380 -13.38743 -13.20069 -13.15151 -13.00148 -12.90519 -12.59545 -12.30118 -12.21728 -11.85242 -11.70379 -11.37106 -11.15365 -11.13259 -11.03852 -10.62559 -10.52335 -10.26155 -10.20397 -9.97423 -8.65855 -8.34243 -6.12131 0.79855 1.30387 1.34127 1.42098 1.49801 1.60433 1.61544 2.12290 2.27556 2.34110 2.43201 2.97710 3.00180 3.33303 3.33738 3.38218 3.54070 3.65186 3.93501 3.97489 3.99141 4.00804 4.27413 4.32204 4.32877 4.49899 4.51402 4.53051 4.60961 4.62285 4.66743 4.67931 4.75829 4.82520 4.84834 5.06714 5.22991 5.35697 5.43092 5.54273 5.66271 5.68167 6.20796 6.40463 6.50962 7.07440 7.08152 7.24368 8.75189 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.001545 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.336562 B =18118.656575 C =19129.625309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.147 3.853 15 C -0.138 4.138 16 C -0.145 4.145 17 C 0.151 3.849 18 N -0.708 5.708 19 C 0.557 3.443 20 O -0.583 6.583 21 C -0.225 4.225 22 C -0.086 4.086 23 C -0.166 4.166 24 H 0.118 0.882 25 C 0.071 3.929 26 O -0.395 6.395 27 C 0.087 3.913 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.339 -24.164 9.820 33.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.363 5.363 14 C 0.024 3.976 15 C -0.157 4.157 16 C -0.165 4.165 17 C 0.028 3.972 18 N -0.360 5.360 19 C 0.344 3.656 20 O -0.463 6.463 21 C -0.229 4.229 22 C -0.123 4.123 23 C -0.185 4.185 24 H 0.136 0.864 25 C -0.005 4.005 26 O -0.315 6.315 27 C 0.010 3.990 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.254 0.746 39 H 0.126 0.874 40 H 0.153 0.847 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.319 -25.127 9.305 32.458 hybrid contribution 1.561 1.457 -0.284 2.154 sum 19.880 -23.670 9.022 32.200 Atomic orbital electron populations 1.70188 1.07977 1.28537 1.48099 1.26123 0.95954 1.03320 0.93770 0.84907 0.78649 0.76363 0.78033 1.17961 1.20050 1.19951 1.23245 0.95382 0.91983 1.58712 0.89825 1.85593 1.10662 0.99306 1.97053 1.23373 1.03513 0.94276 1.06909 1.20075 0.86205 0.86702 0.75107 1.90701 1.17474 1.86097 1.50223 1.45711 1.10391 1.04735 1.75511 1.20372 0.95336 0.79431 1.02474 1.22852 0.98203 0.94991 0.99677 1.22871 0.98108 0.95888 0.99605 1.20326 0.92426 0.99180 0.85293 1.45820 1.30115 1.42775 1.17268 1.19490 0.79851 0.78825 0.87401 1.90705 1.66559 1.41086 1.47965 1.23369 0.91832 1.13134 0.94557 1.23294 0.90265 0.93378 1.05342 1.24418 0.99634 0.95352 0.99138 0.86420 1.23164 0.80893 1.03678 0.92760 1.89067 1.22654 1.42314 1.77431 1.22864 0.98674 0.88248 0.89206 0.92012 0.87028 0.87186 0.74546 0.91369 0.91377 0.84847 0.85117 0.90919 0.91020 0.74596 0.87351 0.84739 0.87472 0.89117 0.88655 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.55 -30.62 9.50 67.95 0.65 -29.98 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 11 C 0.53 18.59 7.85 87.66 0.69 19.27 16 12 O -0.57 -25.37 15.86 -3.05 -0.05 -25.42 16 13 N -0.71 -15.85 5.55 -466.79 -2.59 -18.44 16 14 C 0.15 2.77 6.11 85.63 0.52 3.29 16 15 C -0.14 -1.59 9.24 25.64 0.24 -1.36 16 16 C -0.15 -1.43 9.24 25.64 0.24 -1.20 16 17 C 0.15 1.80 6.11 85.63 0.52 2.32 16 18 N -0.71 -8.14 5.44 -466.78 -2.54 -10.68 16 19 C 0.56 9.47 7.42 87.66 0.65 10.12 16 20 O -0.58 -15.05 16.85 -3.05 -0.05 -15.10 16 21 C -0.23 -2.65 2.84 -51.91 -0.15 -2.80 16 22 C -0.09 -0.64 9.89 30.59 0.30 -0.33 16 23 C -0.17 -1.86 6.90 -9.78 -0.07 -1.93 16 24 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 25 C 0.07 0.65 7.45 72.48 0.54 1.19 16 26 O -0.40 -5.83 11.62 -148.98 -1.73 -7.56 16 27 C 0.09 0.84 7.09 72.48 0.51 1.35 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 30 H 0.11 3.72 8.14 -2.39 -0.02 3.71 16 31 H 0.42 6.43 8.46 -92.70 -0.78 5.65 16 32 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.07 1.38 7.79 -2.39 -0.02 1.37 16 34 H 0.13 1.24 7.84 -2.91 -0.02 1.21 16 35 H 0.13 1.12 7.84 -2.91 -0.02 1.10 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.94 7.79 -2.39 -0.02 0.92 16 38 H 0.42 2.69 8.27 -92.71 -0.77 1.92 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.10 0.87 7.88 -2.39 -0.02 0.85 16 Total: -1.00 -84.41 394.68 -0.78 -85.19 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.52 Total: 15.04 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.55 Total: -3.30 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -4.84 Total: -84.27 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -1.83 Total: -48.08 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -84.41 -0.78 -85.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285482046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.703 kcal (2) G-P(sol) polarization free energy of solvation -84.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds