Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47448 * 270.00699 * 3 2 1 5 5 H 1.48506 * 109.46951 * 30.00238 * 3 2 1 6 6 H 1.48501 * 109.47221 * 150.00161 * 3 2 1 7 7 C 1.38796 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00056 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00264 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00106 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47047 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99622 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99879 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99876 * 180.27463 * 13 11 10 15 15 C 1.53000 * 109.46947 * 185.52857 * 14 13 11 16 16 N 1.46501 * 115.55020 * 273.19974 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.69665 * 16 15 14 18 18 O 1.21739 * 120.00339 * 354.97305 * 17 16 15 19 19 C 1.41797 * 119.99569 * 174.97509 * 17 16 15 20 20 C 1.33462 * 118.78461 * 179.97438 * 19 17 16 21 21 O 1.34347 * 123.07872 * 180.43483 * 20 19 17 22 22 C 1.45354 * 117.48408 * 343.65156 * 21 20 19 23 23 C 1.53487 * 108.26020 * 47.47966 * 22 21 20 24 24 C 1.50415 * 118.79153 * 359.73391 * 19 17 16 25 25 C 1.52999 * 117.49917 * 127.53522 * 15 14 13 26 26 C 1.52994 * 117.50013 * 58.87186 * 15 14 13 27 27 H 0.97002 * 119.99781 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46899 * 60.00392 * 10 9 7 29 29 H 1.08998 * 109.47150 * 299.99930 * 10 9 7 30 30 H 0.97003 * 119.99716 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.46944 * 305.53028 * 14 13 11 32 32 H 1.09000 * 109.47171 * 65.52814 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.69193 * 16 15 14 34 34 H 1.07997 * 118.45931 * 0.41543 * 20 19 17 35 35 H 1.09006 * 109.70470 * 167.16655 * 22 21 20 36 36 H 1.08999 * 109.70740 * 287.74247 * 22 21 20 37 37 H 1.09000 * 109.71015 * 56.98862 * 23 22 21 38 38 H 1.09004 * 109.70372 * 177.56430 * 23 22 21 39 39 H 1.09004 * 109.45122 * 282.35753 * 24 19 17 40 40 H 1.09005 * 109.45398 * 42.29843 * 24 19 17 41 41 H 1.09001 * 117.49770 * 359.97438 * 25 15 14 42 42 H 1.08992 * 117.50176 * 145.02129 * 25 15 14 43 43 H 1.09002 * 117.50027 * 214.97681 * 26 15 14 44 44 H 1.09003 * 117.49971 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 7.4906 -4.7359 0.0051 15 6 7.7580 -6.2357 -0.1357 16 7 7.7688 -6.9959 1.1167 17 6 8.7221 -6.7602 2.0398 18 8 9.6264 -5.9825 1.7961 19 6 8.6716 -7.4182 3.2949 20 6 9.6284 -7.1673 4.1909 21 8 9.6697 -7.7481 5.4016 22 6 8.4573 -8.3933 5.8778 23 6 7.9075 -9.2765 4.7493 24 6 7.5389 -8.3690 3.5693 25 6 8.7174 -6.6817 -1.2409 26 6 7.2146 -6.9363 -1.3825 27 1 -0.4850 0.8401 0.0004 28 1 3.6432 -3.4318 -0.8907 29 1 3.6439 -3.4314 0.8893 30 1 5.4289 -5.2435 -0.0011 31 1 7.9511 -4.2049 -0.8281 32 1 7.9147 -4.3776 0.9431 33 1 7.0898 -7.6687 1.2815 34 1 10.4060 -6.4646 3.9304 35 1 8.6859 -9.0087 6.7480 36 1 7.7196 -7.6370 6.1461 37 1 8.6672 -9.9949 4.4414 38 1 7.0202 -9.8061 5.0963 39 1 6.6395 -7.8022 3.8101 40 1 7.3565 -8.9810 2.6860 41 1 9.1577 -5.9065 -1.8681 42 1 9.3562 -7.5408 -1.0365 43 1 6.8655 -7.9629 -1.2712 44 1 6.6662 -6.3287 -2.1025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285909078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -71.233862 kcal Electronic energy + Delta-G solvation = -26570.834032 eV Core-core repulsion = 22615.869523 eV Total energy + Delta-G solvation = -3954.964509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11477 -39.98704 -39.04037 -37.63575 -34.85978 -33.95435 -32.89426 -32.43481 -31.88858 -29.86342 -26.56514 -26.27161 -25.57481 -24.92120 -23.03543 -22.20528 -20.37376 -20.24238 -19.27831 -18.36231 -17.91856 -17.08336 -16.47413 -16.32074 -16.13632 -15.91564 -15.45714 -15.09969 -15.04414 -14.90586 -14.55699 -14.40584 -13.96322 -13.80498 -13.62840 -13.22961 -13.22129 -13.04263 -12.80358 -12.62709 -11.91962 -11.88572 -11.83090 -11.47935 -11.28014 -11.24535 -11.17807 -11.00027 -10.73516 -10.59945 -10.04649 -9.85144 -9.56377 -9.28397 -9.00659 -8.92324 -8.90348 -8.48653 -6.90883 -6.28721 -4.00148 1.02914 2.64126 2.73995 2.91350 3.01824 3.06929 3.17626 3.33995 3.49340 3.52260 3.76145 4.07232 4.16399 4.25224 4.32458 4.34004 4.51684 4.58251 4.62535 4.70341 4.76520 4.88790 4.91853 5.07048 5.10484 5.19044 5.27183 5.27691 5.36060 5.48533 5.54114 5.55409 5.56850 5.75562 5.76836 5.77829 5.88013 6.01334 6.29445 6.53386 6.73176 7.24899 7.64065 7.94407 8.03526 8.41473 8.52566 9.17706 10.80480 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.002306 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.973735 B =12138.659705 C =13063.994639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.123 4.123 11 C 0.529 3.471 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.156 3.844 15 C 0.087 3.913 16 N -0.700 5.700 17 C 0.577 3.423 18 O -0.546 6.546 19 C -0.322 4.322 20 C 0.165 3.835 21 O -0.310 6.310 22 C 0.051 3.949 23 C -0.156 4.156 24 C -0.073 4.073 25 C -0.156 4.156 26 C -0.168 4.168 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.398 0.602 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.400 0.600 34 H 0.181 0.819 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.691 -24.937 6.630 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.273 4.273 11 C 0.315 3.685 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.031 3.969 15 C -0.001 4.001 16 N -0.352 5.352 17 C 0.369 3.631 18 O -0.426 6.426 19 C -0.327 4.327 20 C 0.097 3.903 21 O -0.220 6.220 22 C -0.023 4.023 23 C -0.194 4.194 24 C -0.110 4.110 25 C -0.195 4.195 26 C -0.205 4.205 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.237 0.763 34 H 0.198 0.802 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.599 -22.723 6.644 30.106 hybrid contribution -1.789 -1.164 -0.046 2.135 sum 16.810 -23.887 6.598 29.945 Atomic orbital electron populations 1.69940 1.05912 1.27756 1.48155 1.24713 0.94457 0.98981 0.93181 0.86735 0.81923 0.83246 0.79957 1.19195 1.19958 1.15890 1.22317 0.88318 0.97508 1.58707 0.89416 1.84825 1.09182 1.00092 1.97412 1.23270 0.94015 1.04354 1.05697 1.20283 0.90565 0.82267 0.75405 1.90713 1.58766 1.42172 1.47595 1.45967 1.07211 1.07965 1.77694 1.20912 0.81509 0.90815 1.03671 1.20730 1.07124 0.91302 0.80910 1.45264 1.31625 1.41167 1.17195 1.16559 0.81374 0.81469 0.83740 1.90842 1.34523 1.37118 1.80109 1.19992 1.04749 1.10495 0.97475 1.23033 0.96115 0.88961 0.82183 1.86292 1.37417 1.66908 1.31388 1.23603 0.85490 0.96226 0.97021 1.22212 1.02730 0.98428 0.96028 1.20291 0.96218 0.95863 0.98643 1.23339 0.92550 1.03647 0.99970 1.23365 0.97606 1.01693 0.97885 0.91955 0.88525 0.88595 0.76869 0.90183 0.90512 0.76338 0.80210 0.87213 0.90532 0.90297 0.89354 0.90436 0.90503 0.87627 0.88234 0.88031 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.96 27.74 -169.99 -4.71 17.24 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 7 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.61 7.85 -10.98 -0.09 9.53 16 12 O -0.52 -11.61 15.85 5.56 0.09 -11.53 16 13 N -0.73 -9.61 5.43 -60.29 -0.33 -9.94 16 14 C 0.16 2.01 5.66 -4.04 -0.02 1.99 16 15 C 0.09 0.82 1.73 -131.82 -0.23 0.59 16 16 N -0.70 -5.95 5.37 -50.42 -0.27 -6.22 16 17 C 0.58 6.24 7.21 -14.90 -0.11 6.14 16 18 O -0.55 -7.92 15.13 5.15 0.08 -7.84 16 19 C -0.32 -2.74 5.69 -105.07 -0.60 -3.34 16 20 C 0.17 1.42 10.46 29.06 0.30 1.72 16 21 O -0.31 -2.40 10.47 -14.88 -0.16 -2.56 16 22 C 0.05 0.24 7.15 37.41 0.27 0.51 16 23 C -0.16 -0.64 6.24 -26.29 -0.16 -0.80 16 24 C -0.07 -0.40 5.15 -27.84 -0.14 -0.54 16 25 C -0.16 -1.32 10.11 -26.69 -0.27 -1.59 16 26 C -0.17 -1.16 9.91 -26.69 -0.26 -1.43 16 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 29 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.40 3.98 8.35 -40.82 -0.34 3.64 16 31 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 32 H 0.08 1.21 7.16 -51.93 -0.37 0.84 16 33 H 0.40 2.33 6.90 -40.82 -0.28 2.05 16 34 H 0.18 1.59 7.21 -52.49 -0.38 1.21 16 35 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.32 7.06 -51.93 -0.37 -0.05 16 41 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -37.03 382.70 -8.00 -45.03 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.37 Total: 2.92 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.88 Total: -1.41 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.18 Total: -42.01 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.01 Total: -21.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.03 -8.00 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285909078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.207 kcal (2) G-P(sol) polarization free energy of solvation -37.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds