Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99729 * 2 1 4 4 H 1.48500 * 109.46883 * 269.99573 * 3 2 1 5 5 H 1.48499 * 109.47337 * 29.99405 * 3 2 1 6 6 H 1.48502 * 109.47134 * 149.99637 * 3 2 1 7 7 C 1.38799 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99267 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99994 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00578 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99587 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99698 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.88960 * 34.29921 * 14 13 11 16 16 C 1.55156 * 111.00764 * 270.42271 * 14 13 11 17 17 C 1.54371 * 102.92304 * 206.45557 * 16 14 13 18 18 N 1.47023 * 107.28781 * 22.13715 * 17 16 14 19 19 C 1.34773 * 125.64513 * 181.06041 * 18 17 16 20 20 O 1.21619 * 119.99727 * 175.04435 * 19 18 17 21 21 C 1.47099 * 120.00579 * 355.03753 * 19 18 17 22 22 C 1.32087 * 118.87231 * 79.32922 * 21 19 18 23 23 C 1.50274 * 122.57515 * 180.15230 * 22 21 19 24 24 O 1.42892 * 110.14197 * 344.80059 * 23 22 21 25 25 C 1.43271 * 113.10226 * 50.33910 * 24 23 22 26 26 C 1.50419 * 118.87764 * 259.60554 * 21 19 18 27 27 C 1.47420 * 108.70354 * 1.09200 * 18 17 16 28 28 H 0.97004 * 119.99853 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46818 * 299.99488 * 10 9 7 30 30 H 1.08995 * 109.47048 * 59.99485 * 10 9 7 31 31 H 0.96996 * 120.00109 * 0.02562 * 13 11 10 32 32 H 1.09008 * 110.71860 * 324.79009 * 16 14 13 33 33 H 1.09002 * 110.72118 * 88.05995 * 16 14 13 34 34 H 1.09003 * 109.84349 * 262.72520 * 17 16 14 35 35 H 1.09003 * 109.90216 * 141.57669 * 17 16 14 36 36 H 1.07992 * 118.71432 * 0.37518 * 22 21 19 37 37 H 1.09006 * 109.49588 * 224.50043 * 23 22 21 38 38 H 1.08995 * 109.08236 * 104.84520 * 23 22 21 39 39 H 1.08997 * 109.64442 * 171.47118 * 25 24 23 40 40 H 1.08999 * 109.63780 * 50.84648 * 25 24 23 41 41 H 1.08992 * 109.45448 * 283.35023 * 26 21 19 42 42 H 1.09007 * 109.45161 * 43.30940 * 26 21 19 43 43 H 1.08996 * 110.37233 * 217.03561 * 27 18 17 44 44 H 1.09000 * 110.36624 * 94.70835 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0019 15 1 1.4057 -7.7842 -0.5709 16 6 2.1269 -8.2315 1.4508 17 6 2.2711 -9.7606 1.2957 18 7 3.0350 -10.0046 0.0634 19 6 3.3560 -11.2150 -0.4350 20 8 3.9151 -11.3004 -1.5117 21 6 3.0301 -12.4327 0.3231 22 6 1.7932 -12.8945 0.2872 23 6 1.3683 -14.1285 1.0322 24 8 2.5157 -14.8716 1.4482 25 6 3.4884 -14.0696 2.1290 26 6 4.1155 -13.1059 1.1178 27 6 3.3925 -8.7062 -0.5362 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7313 0.8904 31 1 3.8009 -6.1835 0.0004 32 1 2.8978 -7.8368 2.1128 33 1 1.1333 -7.9723 1.8166 34 1 1.2854 -10.2193 1.2178 35 1 2.8069 -10.1715 2.1515 36 1 1.0592 -12.3667 -0.3034 37 1 0.7506 -14.7502 0.3840 38 1 0.7908 -13.8345 1.9086 39 1 4.2615 -14.7113 2.5515 40 1 3.0040 -13.5025 2.9238 41 1 4.7679 -13.6608 0.4437 42 1 4.6978 -12.3522 1.6480 43 1 3.3414 -8.7634 -1.6234 44 1 4.3899 -8.4030 -0.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293557744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -95.051398 kcal Electronic energy + Delta-G solvation = -26285.924771 eV Core-core repulsion = 22329.927456 eV Total energy + Delta-G solvation = -3955.997315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89144 -39.74515 -39.02649 -37.53454 -34.55209 -33.98535 -32.46639 -31.70960 -31.16496 -29.71861 -28.39163 -26.49054 -25.51309 -24.46586 -23.75653 -21.75302 -20.88124 -20.39067 -18.76186 -17.99189 -17.78870 -17.09926 -16.92116 -16.44670 -16.27258 -15.61010 -15.37794 -15.10731 -14.91274 -14.83756 -14.55338 -14.00738 -13.93079 -13.87583 -13.35013 -13.32155 -13.20353 -13.02715 -12.82417 -12.65225 -12.47870 -12.08916 -12.01148 -11.69829 -11.45366 -11.17265 -11.09233 -11.06270 -10.79928 -10.68092 -9.97027 -9.86095 -9.60069 -9.53087 -9.15632 -9.10522 -9.03575 -8.29410 -6.54984 -6.25621 -3.96661 1.18612 2.12913 2.42835 2.94590 2.99613 3.19847 3.25223 3.28585 3.31973 3.62269 3.88618 4.15398 4.16708 4.20839 4.34271 4.36921 4.63631 4.68186 4.69242 4.81593 4.84310 4.84989 4.91234 5.07982 5.09479 5.09873 5.12594 5.19935 5.37495 5.39420 5.45288 5.56705 5.63593 5.72826 5.79338 5.81789 5.87974 5.97687 6.07539 6.46026 6.53355 6.99928 7.54185 7.56418 7.67373 8.31292 8.47403 9.19904 10.81756 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.036627 B = 0.001731 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.277984 B =16168.053990 C =16401.400530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.514 6.514 13 N -0.730 5.730 14 C 0.137 3.863 15 H 0.106 0.894 16 C -0.145 4.145 17 C 0.104 3.896 18 N -0.612 5.612 19 C 0.571 3.429 20 O -0.530 6.530 21 C -0.138 4.138 22 C -0.153 4.153 23 C 0.090 3.910 24 O -0.376 6.376 25 C 0.061 3.939 26 C -0.108 4.108 27 C 0.100 3.900 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -27.300 6.035 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.387 6.387 13 N -0.384 5.384 14 C 0.030 3.970 15 H 0.124 0.876 16 C -0.185 4.185 17 C -0.019 4.019 18 N -0.347 5.347 19 C 0.360 3.640 20 O -0.406 6.406 21 C -0.142 4.142 22 C -0.172 4.172 23 C 0.014 3.986 24 O -0.295 6.295 25 C -0.016 4.016 26 C -0.145 4.145 27 C -0.023 4.023 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.780 -27.828 5.384 28.928 hybrid contribution 2.381 1.816 -0.011 2.995 sum 8.161 -26.012 5.373 27.786 Atomic orbital electron populations 1.70017 1.05953 1.27505 1.46776 1.24996 0.95039 0.99058 0.94486 0.86161 0.79396 0.81521 0.78382 1.20249 1.20733 1.19693 1.22861 0.94918 0.91604 1.59076 0.90887 1.85398 1.04771 0.96362 1.96739 1.23535 1.06723 0.95102 1.05086 1.20351 0.86479 0.86210 0.74712 1.90708 1.15319 1.85492 1.47180 1.45858 1.10110 1.04472 1.77983 1.21932 0.97713 0.81257 0.96068 0.87606 1.23127 1.04503 0.92874 0.97958 1.22098 0.96213 0.97017 0.86610 1.48370 1.55259 1.05097 1.25931 1.18198 0.78371 0.82321 0.85126 1.90854 1.42243 1.86355 1.21170 1.20748 0.96283 0.96291 1.00830 1.23423 0.96082 0.98630 0.99062 1.21516 0.88250 0.90971 0.97901 1.88152 1.30371 1.34726 1.76221 1.22677 0.91887 0.93808 0.93226 1.20970 0.96484 0.98912 0.98183 1.22410 0.98061 0.82011 0.99850 0.92150 0.89059 0.89089 0.76488 0.89852 0.88839 0.90909 0.90961 0.85817 0.87154 0.90908 0.87866 0.92288 0.88985 0.89606 0.89318 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 11 C 0.54 9.20 7.85 -10.98 -0.09 9.11 16 12 O -0.51 -10.84 15.55 5.56 0.09 -10.76 16 13 N -0.73 -8.59 5.22 -51.73 -0.27 -8.86 16 14 C 0.14 1.43 3.37 -65.78 -0.22 1.21 16 15 H 0.11 1.32 7.63 -51.93 -0.40 0.93 16 16 C -0.15 -1.24 6.65 -24.87 -0.17 -1.40 16 17 C 0.10 0.73 6.40 -3.04 -0.02 0.71 16 18 N -0.61 -5.66 3.33 -171.88 -0.57 -6.23 16 19 C 0.57 6.30 7.09 -12.67 -0.09 6.21 16 20 O -0.53 -8.00 17.34 5.26 0.09 -7.91 16 21 C -0.14 -1.16 4.82 -103.09 -0.50 -1.66 16 22 C -0.15 -1.07 9.48 -36.44 -0.35 -1.42 16 23 C 0.09 0.50 7.04 35.80 0.25 0.75 16 24 O -0.38 -2.83 10.83 -35.23 -0.38 -3.21 16 25 C 0.06 0.32 6.88 37.22 0.26 0.58 16 26 C -0.11 -0.71 6.08 -27.96 -0.17 -0.88 16 27 C 0.10 0.94 6.57 -2.53 -0.02 0.92 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.40 3.56 8.54 -40.82 -0.35 3.21 16 32 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.12 0.82 7.99 -52.49 -0.42 0.40 16 37 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.24 8.09 -51.93 -0.42 -0.18 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.09 0.94 7.99 -51.93 -0.41 0.53 16 44 H 0.08 0.61 8.00 -51.93 -0.42 0.20 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -36.69 384.13 -9.05 -45.74 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.60 Total: -0.53 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.68 Total: -1.29 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.11 Total: -40.12 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.20 Total: -21.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.69 -9.05 -45.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293557744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.312 kcal (2) G-P(sol) polarization free energy of solvation -36.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds