Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48499 * 109.47285 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47107 * 300.00005 * 3 2 1 6 6 H 1.48491 * 109.47299 * 59.99875 * 3 2 1 7 7 C 1.38795 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00246 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46893 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00254 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99845 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49274 * 180.02562 * 13 11 10 15 15 C 1.53939 * 86.11568 * 155.35927 * 14 13 11 16 16 N 1.46506 * 113.74194 * 137.94981 * 15 14 13 17 17 C 1.34771 * 119.99902 * 156.92085 * 16 15 14 18 18 O 1.21288 * 120.00390 * 359.72891 * 17 16 15 19 19 C 1.50706 * 120.00069 * 180.02562 * 17 16 15 20 20 H 1.09001 * 115.55789 * 11.27803 * 19 17 16 21 21 C 1.53170 * 117.52532 * 157.05117 * 19 17 16 22 22 C 1.52128 * 117.52104 * 225.50789 * 19 17 16 23 23 C 1.54042 * 121.46946 * 141.71268 * 22 19 17 24 24 C 1.55189 * 101.82899 * 195.70184 * 23 22 19 25 25 O 1.44458 * 103.62634 * 36.33053 * 24 23 22 26 26 C 1.43982 * 107.05277 * 320.42996 * 25 24 23 27 27 C 1.47808 * 134.45276 * 359.87147 * 13 11 10 28 28 H 0.97000 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46890 * 60.00199 * 10 9 7 30 30 H 1.08998 * 109.47132 * 300.00119 * 10 9 7 31 31 H 1.09002 * 113.77007 * 41.05453 * 14 13 11 32 32 H 1.09005 * 113.86685 * 269.67569 * 14 13 11 33 33 H 1.09000 * 113.74180 * 269.15185 * 15 14 13 34 34 H 0.96997 * 119.99519 * 336.93082 * 16 15 14 35 35 H 1.09001 * 117.52507 * 214.85246 * 21 19 17 36 36 H 1.09008 * 117.52128 * 0.02562 * 21 19 17 37 37 H 1.08997 * 110.96229 * 313.83903 * 23 22 19 38 38 H 1.09001 * 110.95644 * 77.57375 * 23 22 19 39 39 H 1.08994 * 110.58961 * 277.79777 * 24 23 22 40 40 H 1.08994 * 110.72048 * 154.92878 * 24 23 22 41 41 H 1.09003 * 109.97083 * 266.94150 * 26 25 24 42 42 H 1.09005 * 110.00821 * 145.68683 * 26 25 24 43 43 H 1.09003 * 113.76845 * 90.38290 * 27 13 11 44 44 H 1.08999 * 113.83829 * 318.91324 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.6892 -7.8107 0.0007 15 6 4.0882 -7.8537 -0.6402 16 7 4.9535 -8.9041 -0.0977 17 6 5.9842 -9.3725 -0.8288 18 8 6.1925 -8.9279 -1.9379 19 6 6.8740 -10.4534 -0.2710 20 1 6.5137 -10.9370 0.6370 21 6 7.6535 -11.3141 -1.2698 22 6 8.3770 -10.2749 -0.4235 23 6 9.3534 -10.6876 0.6942 24 6 10.6536 -9.9558 0.2670 25 8 10.1766 -8.7093 -0.2855 26 6 8.9860 -9.0089 -1.0377 27 6 4.3168 -6.4714 -0.0026 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 1.8947 -8.1685 -0.6542 32 1 2.6488 -8.2500 0.9975 33 1 4.0724 -7.8369 -1.7299 34 1 4.7844 -9.2625 0.7877 35 1 7.8067 -12.3636 -1.0184 36 1 7.5230 -11.0980 -2.3302 37 1 9.0073 -10.3329 1.6649 38 1 9.4996 -11.7677 0.7049 39 1 11.1866 -10.5315 -0.4896 40 1 11.2941 -9.7726 1.1297 41 1 9.2408 -9.1875 -2.0824 42 1 8.2797 -8.1821 -0.9631 43 1 4.7563 -6.5146 0.9939 44 1 4.8193 -5.7621 -0.6602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297142314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -49.047779 kcal Electronic energy + Delta-G solvation = -26171.060745 eV Core-core repulsion = 22217.058297 eV Total energy + Delta-G solvation = -3954.002448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17085 -40.28674 -39.04880 -37.54625 -36.18268 -34.16320 -32.43531 -30.87638 -30.35199 -28.17114 -27.60687 -26.35345 -25.48706 -24.79746 -23.29886 -21.71361 -20.98415 -20.00344 -19.08424 -17.76761 -17.71623 -17.12885 -16.67486 -16.65478 -16.28641 -15.56966 -15.47802 -15.00288 -14.93541 -14.80520 -14.50120 -14.07336 -13.96328 -13.47881 -13.35270 -13.04156 -12.96119 -12.81193 -12.75203 -12.65055 -12.44584 -12.01434 -11.82908 -11.55885 -11.51361 -11.06844 -11.02056 -10.99387 -10.76141 -10.67941 -10.22783 -10.04546 -9.82247 -9.59442 -9.39483 -9.07917 -8.70601 -8.25228 -6.51703 -6.22274 -3.93250 1.92216 2.38831 2.80037 3.06103 3.20404 3.21983 3.24912 3.31162 3.48621 3.53390 3.73810 4.01991 4.09326 4.17838 4.19702 4.36078 4.43350 4.48537 4.65112 4.79248 4.83672 4.87742 4.88142 5.13099 5.14637 5.15266 5.19766 5.28451 5.28695 5.32387 5.38274 5.41284 5.45493 5.53297 5.54458 5.61962 5.86673 5.92070 6.06948 6.13266 6.40371 7.00907 7.59773 7.71021 7.76248 8.35228 8.47077 9.23227 10.85247 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.001992 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.838262 B =14052.214480 C =15438.127599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.145 4.145 11 C 0.560 3.440 12 O -0.512 6.512 13 N -0.649 5.649 14 C 0.103 3.897 15 C 0.112 3.888 16 N -0.715 5.715 17 C 0.545 3.455 18 O -0.532 6.532 19 C -0.175 4.175 20 H 0.125 0.875 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.121 4.121 24 C 0.048 3.952 25 O -0.376 6.376 26 C 0.085 3.915 27 C 0.091 3.909 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.404 0.596 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.892 -27.543 2.137 34.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.296 4.296 11 C 0.350 3.650 12 O -0.385 6.385 13 N -0.389 5.389 14 C -0.021 4.021 15 C 0.006 3.994 16 N -0.366 5.366 17 C 0.332 3.668 18 O -0.408 6.408 19 C -0.197 4.197 20 H 0.143 0.857 21 C -0.162 4.162 22 C -0.133 4.133 23 C -0.159 4.159 24 C -0.029 4.029 25 O -0.295 6.295 26 C 0.009 3.991 27 C -0.034 4.034 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.147 0.853 34 H 0.239 0.761 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.020 -26.990 1.349 32.481 hybrid contribution 1.647 0.877 0.630 1.970 sum 19.667 -26.113 1.979 32.751 Atomic orbital electron populations 1.70025 1.05956 1.27379 1.46920 1.25000 0.95049 0.99071 0.94509 0.86099 0.79603 0.81792 0.77908 1.19586 1.20533 1.20551 1.22894 0.94944 0.91500 1.58887 0.90835 1.85395 1.04859 0.96426 1.96730 1.23481 1.06564 0.94558 1.04973 1.20036 0.85359 0.85080 0.74526 1.90719 1.14794 1.84895 1.48117 1.49785 1.07378 1.05540 1.76196 1.23361 0.96439 0.81465 1.00838 1.23175 0.89227 0.86208 1.00819 1.45836 1.30281 1.40124 1.20387 1.19628 0.80318 0.81973 0.84930 1.90744 1.71024 1.59401 1.19621 1.22254 0.92830 1.01232 1.03337 0.85680 1.23063 0.99374 0.96026 0.97762 1.22212 0.91198 0.99429 1.00485 1.22679 0.94221 1.01346 0.97618 1.23557 0.95622 0.85334 0.98357 1.88976 1.41904 1.29186 1.69421 1.22543 0.86491 0.95172 0.94909 1.23695 0.82095 0.96302 1.01306 0.92215 0.89264 0.89155 0.89202 0.89714 0.85320 0.76064 0.87304 0.86961 0.89679 0.89647 0.91919 0.88715 0.91254 0.89046 0.89480 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.04 5.91 36.00 0.21 -2.83 16 11 C 0.56 10.93 8.07 -10.98 -0.09 10.85 16 12 O -0.51 -12.00 16.59 5.56 0.09 -11.91 16 13 N -0.65 -9.12 3.61 -178.37 -0.64 -9.76 16 14 C 0.10 1.03 8.59 -2.97 -0.03 1.00 16 15 C 0.11 0.99 4.40 -70.16 -0.31 0.68 16 16 N -0.71 -4.65 5.37 -55.35 -0.30 -4.95 16 17 C 0.54 4.47 6.88 -10.98 -0.08 4.39 16 18 O -0.53 -6.33 14.74 5.55 0.08 -6.25 16 19 C -0.18 -0.96 6.07 -92.13 -0.56 -1.52 16 20 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 21 C -0.12 -0.64 9.82 -27.00 -0.27 -0.91 16 22 C -0.13 -0.81 2.42 -154.60 -0.37 -1.18 16 23 C -0.12 -0.53 6.94 -25.03 -0.17 -0.71 16 24 C 0.05 0.28 7.73 38.32 0.30 0.57 16 25 O -0.38 -3.64 11.53 -35.23 -0.41 -4.05 16 26 C 0.09 0.75 6.70 37.33 0.25 1.00 16 27 C 0.09 0.93 8.43 -2.85 -0.02 0.91 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 30 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.13 1.34 7.50 -51.93 -0.39 0.95 16 34 H 0.40 1.48 8.71 -40.82 -0.36 1.13 16 35 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.11 0.73 7.86 -51.92 -0.41 0.32 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.22 8.13 -51.93 -0.42 -0.20 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.94 6.79 -51.93 -0.35 0.59 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -37.70 386.25 -9.34 -47.03 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.54 Total: -2.20 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -0.94 Total: -0.83 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.21 Total: -40.32 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.23 Total: -22.21 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.70 -9.34 -47.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297142314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.016 kcal (2) G-P(sol) polarization free energy of solvation -37.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds