Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48499 * 109.47285 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47107 * 300.00005 * 3 2 1 6 6 H 1.48491 * 109.47299 * 59.99875 * 3 2 1 7 7 C 1.38795 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00246 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46893 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00254 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99845 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49274 * 180.02562 * 13 11 10 15 15 C 1.53939 * 86.11568 * 155.35927 * 14 13 11 16 16 N 1.46506 * 113.74194 * 137.94981 * 15 14 13 17 17 C 1.34771 * 119.99902 * 156.92085 * 16 15 14 18 18 O 1.21288 * 120.00390 * 359.72891 * 17 16 15 19 19 C 1.50706 * 120.00069 * 180.02562 * 17 16 15 20 20 H 1.09001 * 115.55789 * 11.27803 * 19 17 16 21 21 C 1.53170 * 117.52532 * 157.05117 * 19 17 16 22 22 C 1.52128 * 117.52104 * 225.50789 * 19 17 16 23 23 C 1.54042 * 121.46946 * 141.71268 * 22 19 17 24 24 C 1.55189 * 101.82899 * 195.70184 * 23 22 19 25 25 O 1.44458 * 103.62634 * 36.33053 * 24 23 22 26 26 C 1.43982 * 107.05277 * 320.42996 * 25 24 23 27 27 C 1.47808 * 134.45276 * 359.87147 * 13 11 10 28 28 H 0.97000 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46890 * 60.00199 * 10 9 7 30 30 H 1.08998 * 109.47132 * 300.00119 * 10 9 7 31 31 H 1.09002 * 113.77007 * 41.05453 * 14 13 11 32 32 H 1.09005 * 113.86685 * 269.67569 * 14 13 11 33 33 H 1.09000 * 113.74180 * 269.15185 * 15 14 13 34 34 H 0.96997 * 119.99519 * 336.93082 * 16 15 14 35 35 H 1.09001 * 117.52507 * 214.85246 * 21 19 17 36 36 H 1.09008 * 117.52128 * 0.02562 * 21 19 17 37 37 H 1.08997 * 110.96229 * 313.83903 * 23 22 19 38 38 H 1.09001 * 110.95644 * 77.57375 * 23 22 19 39 39 H 1.08994 * 110.58961 * 277.79777 * 24 23 22 40 40 H 1.08994 * 110.72048 * 154.92878 * 24 23 22 41 41 H 1.09003 * 109.97083 * 266.94150 * 26 25 24 42 42 H 1.09005 * 110.00821 * 145.68683 * 26 25 24 43 43 H 1.09003 * 113.76845 * 90.38290 * 27 13 11 44 44 H 1.08999 * 113.83829 * 318.91324 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.6892 -7.8107 0.0007 15 6 4.0882 -7.8537 -0.6402 16 7 4.9535 -8.9041 -0.0977 17 6 5.9842 -9.3725 -0.8288 18 8 6.1925 -8.9279 -1.9379 19 6 6.8740 -10.4534 -0.2710 20 1 6.5137 -10.9370 0.6370 21 6 7.6535 -11.3141 -1.2698 22 6 8.3770 -10.2749 -0.4235 23 6 9.3534 -10.6876 0.6942 24 6 10.6536 -9.9558 0.2670 25 8 10.1766 -8.7093 -0.2855 26 6 8.9860 -9.0089 -1.0377 27 6 4.3168 -6.4714 -0.0026 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 1.8947 -8.1685 -0.6542 32 1 2.6488 -8.2500 0.9975 33 1 4.0724 -7.8369 -1.7299 34 1 4.7844 -9.2625 0.7877 35 1 7.8067 -12.3636 -1.0184 36 1 7.5230 -11.0980 -2.3302 37 1 9.0073 -10.3329 1.6649 38 1 9.4996 -11.7677 0.7049 39 1 11.1866 -10.5315 -0.4896 40 1 11.2941 -9.7726 1.1297 41 1 9.2408 -9.1875 -2.0824 42 1 8.2797 -8.1821 -0.9631 43 1 4.7563 -6.5146 0.9939 44 1 4.8193 -5.7621 -0.6602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297142314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -77.479137 kcal Electronic energy + Delta-G solvation = -26172.293621 eV Core-core repulsion = 22217.058297 eV Total energy + Delta-G solvation = -3955.235324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87009 -41.17863 -39.88346 -38.78750 -36.74863 -34.97663 -34.61982 -31.87246 -31.24799 -29.22463 -28.36204 -27.70815 -27.21428 -25.48015 -23.73066 -22.59001 -21.56958 -20.68714 -20.26766 -19.56415 -18.32140 -18.19278 -17.78311 -17.27589 -16.95900 -16.88303 -16.84689 -16.26240 -15.99506 -15.92635 -15.58217 -15.29234 -14.88312 -14.58287 -14.21846 -14.14767 -13.82813 -13.75936 -13.72448 -13.42430 -13.23178 -13.19831 -13.15955 -12.93147 -12.62411 -12.43793 -12.41190 -11.95946 -11.75313 -11.42581 -11.22336 -11.18693 -11.05693 -10.76605 -10.64203 -10.33950 -10.21134 -9.86753 -8.71913 -8.37968 -6.17000 1.13644 1.32031 1.38714 1.39688 1.46779 1.53305 1.76835 2.19679 2.24174 2.74482 2.96168 2.97845 3.10333 3.28675 3.29464 3.51854 3.64357 3.75063 3.82632 3.90234 3.95403 4.04495 4.21429 4.26766 4.36001 4.40127 4.47726 4.48866 4.50300 4.56571 4.64305 4.77654 4.79349 4.83215 4.87439 4.91254 4.99906 5.07676 5.12093 5.37614 5.38822 5.87213 6.16902 6.39682 6.51374 7.01389 7.03255 7.18181 8.71636 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.001992 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.838262 B =14052.214480 C =15438.127599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.147 6.147 10 C -0.121 4.121 11 C 0.559 3.441 12 O -0.564 6.564 13 N -0.648 5.648 14 C 0.105 3.895 15 C 0.129 3.871 16 N -0.698 5.698 17 C 0.539 3.461 18 O -0.575 6.575 19 C -0.169 4.169 20 H 0.162 0.838 21 C -0.119 4.119 22 C -0.138 4.138 23 C -0.110 4.110 24 C 0.037 3.963 25 O -0.406 6.406 26 C 0.083 3.917 27 C 0.088 3.912 28 H 0.272 0.728 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.423 0.577 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.345 -29.569 3.735 37.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.080 5.920 10 C -0.272 4.272 11 C 0.348 3.652 12 O -0.442 6.442 13 N -0.385 5.385 14 C -0.017 4.017 15 C 0.022 3.978 16 N -0.350 5.350 17 C 0.328 3.672 18 O -0.454 6.454 19 C -0.189 4.189 20 H 0.179 0.821 21 C -0.156 4.156 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.039 4.039 25 O -0.326 6.326 26 C 0.007 3.993 27 C -0.035 4.035 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.262 0.738 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.133 0.867 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 20.526 -29.087 2.981 35.725 hybrid contribution 1.009 1.367 0.097 1.702 sum 21.535 -27.720 3.078 35.237 Atomic orbital electron populations 1.70181 1.07937 1.28649 1.47879 1.26146 0.96023 1.03344 0.93647 0.84881 0.78501 0.76201 0.78210 1.18195 1.19840 1.19664 1.23206 0.95264 0.91903 1.59044 0.90093 1.85536 1.10247 0.99190 1.97036 1.23281 1.03559 0.94108 1.06262 1.19644 0.85137 0.85570 0.74834 1.90693 1.16857 1.85583 1.51047 1.49700 1.08771 1.06377 1.73654 1.23668 0.96788 0.78487 1.02799 1.22696 0.89004 0.86316 0.99812 1.45627 1.29317 1.39076 1.21012 1.20197 0.80482 0.82156 0.84400 1.90738 1.72106 1.60886 1.21708 1.22359 0.91683 1.00282 1.04609 0.82052 1.23149 0.98431 0.97346 0.96656 1.22179 0.91819 0.98521 1.01385 1.22679 0.92367 1.02698 0.96944 1.23842 0.96812 0.84312 0.98954 1.88935 1.42304 1.31643 1.69737 1.22432 0.86257 0.95962 0.94692 1.24024 0.79599 0.96905 1.02977 0.91883 0.87574 0.87979 0.89661 0.86303 0.87015 0.73843 0.84242 0.88995 0.88976 0.86993 0.91249 0.87459 0.92480 0.91380 0.86701 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.12 -5.10 5.91 71.23 0.42 -4.67 16 11 C 0.56 21.92 8.07 87.65 0.71 22.63 16 12 O -0.56 -27.21 16.59 -3.01 -0.05 -27.26 16 13 N -0.65 -17.38 3.61 -836.64 -3.02 -20.40 16 14 C 0.10 1.87 8.59 86.48 0.74 2.61 16 15 C 0.13 2.04 4.40 46.74 0.21 2.24 16 16 N -0.70 -7.10 5.37 -447.43 -2.40 -9.51 16 17 C 0.54 7.87 6.88 87.66 0.60 8.47 16 18 O -0.58 -13.65 14.74 -3.06 -0.05 -13.70 16 19 C -0.17 -1.32 6.07 -11.77 -0.07 -1.39 16 20 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 21 C -0.12 -0.91 9.82 30.42 0.30 -0.61 16 22 C -0.14 -1.38 2.42 -52.24 -0.13 -1.51 16 23 C -0.11 -0.60 6.94 31.70 0.22 -0.38 16 24 C 0.04 0.36 7.73 72.73 0.56 0.92 16 25 O -0.41 -7.79 11.53 -148.98 -1.72 -9.51 16 26 C 0.08 1.47 6.70 72.09 0.48 1.95 16 27 C 0.09 1.63 8.43 86.44 0.73 2.36 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 30 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.12 1.39 8.11 -2.38 -0.02 1.37 16 33 H 0.11 2.27 7.50 -2.39 -0.02 2.25 16 34 H 0.42 1.30 8.71 -92.71 -0.81 0.49 16 35 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.09 1.13 7.86 -2.38 -0.02 1.11 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.11 0.05 8.13 -2.39 -0.02 0.03 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.47 6.79 -2.38 -0.02 1.45 16 43 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -87.34 386.25 0.01 -87.33 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.21 Total: 9.88 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.89 Total: 2.60 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -5.14 Total: -86.14 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -1.81 Total: -50.47 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -87.34 0.01 -87.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297142314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.851 kcal (2) G-P(sol) polarization free energy of solvation -87.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds