Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34990 * 125.97355 * 124.71877 * 10 9 7 12 12 C 1.35220 * 107.87616 * 179.89417 * 11 10 9 13 13 C 1.40462 * 107.86777 * 0.36341 * 12 11 10 14 14 N 1.39930 * 125.97896 * 179.77784 * 13 12 11 15 15 C 1.34774 * 120.00006 * 0.02562 * 14 13 12 16 16 O 1.21384 * 119.99897 * 0.02562 * 15 14 13 17 17 C 1.49343 * 120.00163 * 180.02562 * 15 14 13 18 18 O 1.21372 * 119.99566 * 0.02562 * 17 15 14 19 19 N 1.34767 * 120.00204 * 180.02562 * 17 15 14 20 20 C 1.47021 * 125.64947 * 0.02562 * 19 17 15 21 21 C 1.54319 * 107.27139 * 181.02313 * 20 19 17 22 22 C 1.55157 * 102.94650 * 22.19745 * 21 20 19 23 23 F 1.39900 * 111.00228 * 82.56535 * 22 21 20 24 24 C 1.52994 * 111.00929 * 206.38537 * 22 21 20 25 25 O 1.42897 * 109.47252 * 179.97438 * 24 22 21 26 26 C 1.47423 * 125.64815 * 179.71796 * 19 17 15 27 27 N 1.31278 * 108.03871 * 359.77278 * 13 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.07993 * 126.05905 * 0.02850 * 11 10 9 32 32 H 1.07998 * 126.06295 * 180.13798 * 12 11 10 33 33 H 0.96998 * 119.99767 * 180.02562 * 14 13 12 34 34 H 1.08996 * 109.88358 * 300.44655 * 20 19 17 35 35 H 1.09002 * 109.87931 * 61.45782 * 20 19 17 36 36 H 1.09004 * 110.72277 * 140.55733 * 21 20 19 37 37 H 1.08999 * 110.72584 * 263.83434 * 21 20 19 38 38 H 1.08996 * 109.47026 * 299.99708 * 24 22 21 39 39 H 1.09002 * 109.47113 * 59.99292 * 24 22 21 40 40 H 0.96704 * 114.00067 * 180.02562 * 25 24 22 41 41 H 1.09000 * 110.37051 * 274.74787 * 26 19 17 42 42 H 1.09005 * 110.37179 * 37.06639 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2451 -4.6237 0.8832 12 6 3.2607 -5.4449 0.5331 13 6 3.8696 -4.9120 -0.6151 14 7 4.9640 -5.4588 -1.2942 15 6 5.5282 -6.6008 -0.8539 16 8 5.0867 -7.1552 0.1316 17 6 6.6966 -7.1841 -1.5784 18 8 7.1383 -6.6295 -2.5634 19 7 7.2605 -8.3263 -1.1384 20 6 6.8281 -9.0987 0.0355 21 6 7.7792 -10.3070 0.1647 22 6 9.0407 -9.8407 -0.6089 23 9 9.8585 -9.0438 0.1994 24 6 9.8188 -11.0367 -1.1611 25 8 10.9710 -10.5709 -1.8663 26 6 8.4092 -9.0117 -1.7582 27 7 3.2321 -3.8112 -0.9395 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.5835 -4.7547 1.7267 32 1 3.5541 -6.3482 1.0473 33 1 5.3165 -5.0159 -2.0819 34 1 6.8914 -8.4796 0.9304 35 1 5.8037 -9.4437 -0.1047 36 1 8.0177 -10.5000 1.2107 37 1 7.3453 -11.1911 -0.3024 38 1 10.1314 -11.6784 -0.3373 39 1 9.1813 -11.6025 -1.8406 40 1 11.5126 -11.2770 -2.2448 41 1 8.0718 -9.6673 -2.5609 42 1 9.1258 -8.2834 -2.1380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322773326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -92.031997 kcal Electronic energy + Delta-G solvation = -28842.776118 eV Core-core repulsion = 24352.989310 eV Total energy + Delta-G solvation = -4489.786809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.75470 -42.49940 -41.64516 -39.91577 -38.79584 -37.49103 -36.39270 -35.32038 -33.08538 -32.85003 -31.03119 -30.53248 -28.96024 -27.97441 -25.93720 -24.72121 -23.86418 -22.58438 -21.71678 -21.49706 -20.77262 -19.16701 -18.71909 -18.36472 -18.18520 -17.95997 -17.78436 -17.25272 -17.01565 -16.62376 -16.29176 -16.12422 -15.91742 -15.78976 -15.40141 -14.89020 -14.69880 -14.67972 -14.33780 -14.25620 -14.03856 -13.88514 -13.75911 -13.63606 -13.17291 -13.00024 -12.82550 -12.66208 -12.46879 -12.32198 -12.14878 -11.96412 -11.75002 -11.65875 -11.44496 -11.00360 -10.78325 -10.73137 -10.04540 -9.83921 -9.22760 -8.34949 -6.48191 -0.02816 0.72341 1.11399 1.36767 1.38301 1.48938 1.68763 1.70943 2.20972 2.29985 2.39648 2.80457 2.97349 3.06976 3.16532 3.23000 3.52544 3.89979 4.00429 4.05274 4.14717 4.20954 4.42614 4.50608 4.56047 4.58771 4.64045 4.75920 4.82820 4.83527 4.87606 4.93405 5.00285 5.04074 5.14598 5.54952 5.72715 5.76333 5.81497 5.97731 6.24091 6.36897 6.62771 6.66497 6.88512 6.94981 7.21603 8.72824 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.002002 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.566034 B =13985.792771 C =14474.849406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.020 3.980 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.271 3.729 10 N -0.339 5.339 11 C 0.061 3.939 12 C -0.285 4.285 13 C 0.258 3.742 14 N -0.602 5.602 15 C 0.521 3.479 16 O -0.495 6.495 17 C 0.532 3.468 18 O -0.540 6.540 19 N -0.587 5.587 20 C 0.095 3.905 21 C -0.135 4.135 22 C 0.098 3.902 23 F -0.212 7.212 24 C 0.069 3.931 25 O -0.594 6.594 26 C 0.088 3.912 27 N -0.343 5.343 28 H 0.273 0.727 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.208 0.792 32 H 0.178 0.822 33 H 0.426 0.574 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.405 0.595 41 H 0.121 0.879 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.982 -29.238 0.187 33.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.069 0.931 9 C 0.152 3.848 10 N -0.121 5.121 11 C -0.087 4.087 12 C -0.316 4.316 13 C 0.004 3.996 14 N -0.251 5.251 15 C 0.302 3.698 16 O -0.368 6.368 17 C 0.314 3.686 18 O -0.418 6.418 19 N -0.320 5.320 20 C -0.027 4.027 21 C -0.172 4.172 22 C 0.079 3.921 23 F -0.192 7.192 24 C -0.009 4.009 25 O -0.404 6.404 26 C -0.034 4.034 27 N -0.174 5.174 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.225 0.775 32 H 0.196 0.804 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.156 0.844 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.257 0.743 41 H 0.139 0.861 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.342 -27.528 -0.265 32.014 hybrid contribution 0.639 0.636 -0.114 0.909 sum 16.981 -26.891 -0.379 31.806 Atomic orbital electron populations 1.69983 1.07067 1.28761 1.49850 1.25702 0.95861 1.02602 0.93926 0.85379 0.78382 0.78357 0.78486 1.19989 1.19508 1.19898 1.21398 0.93327 0.91083 1.52894 0.93134 1.19394 0.85601 0.81331 0.98432 1.48917 1.23455 1.20378 1.19388 1.23266 1.00395 0.88440 0.96619 1.21752 1.01952 1.06780 1.01136 1.19310 0.91356 0.93837 0.95056 1.42077 1.28353 1.24102 1.30559 1.20016 0.84209 0.80709 0.84914 1.90664 1.61832 1.59499 1.24791 1.19263 0.83750 0.81174 0.84399 1.90800 1.63577 1.60569 1.26827 1.48242 1.31810 1.22059 1.29931 1.22496 1.00346 0.92730 0.87083 1.23388 0.91345 0.98563 1.03942 1.22442 0.90060 0.90161 0.89469 1.92868 1.74967 1.76472 1.74933 1.22663 0.88028 0.92582 0.97657 1.86491 1.39803 1.39762 1.74329 1.23139 0.87001 0.96813 0.96449 1.77330 1.04622 1.17879 1.17567 0.91803 0.91781 0.95880 0.77504 0.80440 0.73553 0.90853 0.88349 0.86515 0.84439 0.89770 0.87969 0.74344 0.86148 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.94 13.29 21.45 0.28 -51.65 16 2 C 0.02 1.09 5.46 84.66 0.46 1.56 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.55 -31.11 9.24 25.60 0.24 -30.87 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.27 13.93 6.26 85.64 0.54 14.47 16 10 N -0.34 -15.73 3.67 -351.87 -1.29 -17.02 16 11 C 0.06 2.30 11.43 83.51 0.95 3.25 16 12 C -0.29 -10.49 9.60 22.12 0.21 -10.27 16 13 C 0.26 10.40 8.10 133.40 1.08 11.48 16 14 N -0.60 -20.33 5.43 -308.89 -1.68 -22.01 16 15 C 0.52 15.51 7.82 87.24 0.68 16.19 16 16 O -0.50 -14.69 11.24 -3.35 -0.04 -14.73 16 17 C 0.53 14.45 7.91 87.24 0.69 15.14 16 18 O -0.54 -17.19 16.73 -3.32 -0.06 -17.25 16 19 N -0.59 -11.99 3.32 -813.04 -2.70 -14.69 16 20 C 0.09 1.39 5.49 86.73 0.48 1.86 16 21 C -0.13 -0.86 6.23 31.78 0.20 -0.67 16 22 C 0.10 1.16 1.37 -9.32 -0.01 1.14 16 23 F -0.21 -4.39 16.95 44.97 0.76 -3.63 16 24 C 0.07 0.35 6.30 71.98 0.45 0.80 16 25 O -0.59 -5.77 13.47 -148.98 -2.01 -7.78 16 26 C 0.09 1.41 6.09 86.94 0.53 1.94 16 27 N -0.34 -16.21 12.42 -54.53 -0.68 -16.89 16 28 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 29 H 0.06 3.17 8.07 -2.38 -0.02 3.15 16 30 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.21 5.87 8.06 -2.91 -0.02 5.85 16 32 H 0.18 5.86 5.91 -2.91 -0.02 5.84 16 33 H 0.43 13.68 8.29 -92.71 -0.77 12.91 16 34 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 35 H 0.10 1.32 7.69 -2.39 -0.02 1.30 16 36 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.14 -0.09 8.04 -2.39 -0.02 -0.11 16 38 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.10 -0.13 8.07 -2.39 -0.02 -0.15 16 40 H 0.41 -0.10 9.12 -74.05 -0.68 -0.78 16 41 H 0.12 1.28 7.99 -2.39 -0.02 1.26 16 42 H 0.07 1.61 8.03 -2.38 -0.02 1.59 16 Total: -1.00 -77.81 366.08 0.78 -77.03 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.35 Total: 16.36 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 6.50 Total: 26.02 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -6.06 Total: -122.26 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -2.10 Total: -39.76 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.76 Total: -3.63 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.81 0.78 -77.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322773326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.998 kcal (2) G-P(sol) polarization free energy of solvation -77.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds