Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47103 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.47010 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47375 * 179.97438 * 21 20 19 23 23 S 1.81393 * 109.47543 * 180.02562 * 22 21 20 24 24 N 1.65600 * 104.45141 * 179.97438 * 23 22 21 25 25 O 1.42098 * 110.54538 * 291.62819 * 23 22 21 26 26 O 1.42101 * 110.54196 * 68.37384 * 23 22 21 27 27 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 28 28 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 33 33 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 34 34 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 35 35 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 36 36 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 37 37 H 1.08992 * 109.47355 * 299.99774 * 20 19 18 38 38 H 1.09003 * 109.47571 * 60.00046 * 20 19 18 39 39 H 1.09001 * 109.47065 * 300.00007 * 21 20 19 40 40 H 1.08998 * 109.46830 * 60.00268 * 21 20 19 41 41 H 1.09003 * 109.46941 * 300.00573 * 22 21 20 42 42 H 1.09008 * 109.47151 * 59.99876 * 22 21 20 43 43 H 0.96991 * 120.00017 * 0.02562 * 24 23 22 44 44 H 0.97007 * 119.99980 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7700 -3.9356 -1.4474 21 6 9.1408 -3.9018 -0.7685 22 6 10.2376 -4.0302 -1.8274 23 16 11.8628 -3.9910 -1.0226 24 7 12.9444 -4.1378 -2.2680 25 8 12.1212 -2.7019 -0.4834 26 8 12.0628 -5.1637 -0.2454 27 1 -0.4849 -0.8357 -0.0852 28 1 0.0691 -1.3040 1.8430 29 1 -0.9698 -3.3393 2.7431 30 1 -0.2416 -5.5537 1.9556 31 1 1.5304 -5.7534 0.2610 32 1 2.7709 -4.7177 -1.4995 33 1 2.8121 -2.9465 -1.6708 34 1 5.2988 -3.9312 -2.0021 35 1 6.7917 -2.8647 0.1451 36 1 6.7498 -4.6358 0.3162 37 1 7.6517 -4.8785 -1.9811 38 1 7.6934 -3.1072 -2.1518 39 1 9.2589 -2.9586 -0.2351 40 1 9.2178 -4.7299 -0.0640 41 1 10.1193 -4.9736 -2.3606 42 1 10.1608 -3.2024 -2.5324 43 1 12.6254 -4.2183 -3.1804 44 1 13.8970 -4.1424 -2.0850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326384599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = -117.049896 kcal Electronic energy + Delta-G solvation = -26250.284261 eV Core-core repulsion = 22293.333020 eV Total energy + Delta-G solvation = -3956.951241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.32038 -37.61993 -37.39785 -36.41195 -36.26987 -33.84035 -33.77615 -33.67001 -31.82631 -29.63953 -29.18071 -26.84013 -24.96799 -23.99061 -21.87092 -20.91771 -20.64588 -19.85609 -19.47068 -18.08798 -17.72814 -17.69553 -16.78340 -16.39997 -15.85703 -15.84365 -15.66613 -15.02458 -14.83096 -14.26351 -14.13381 -13.80388 -13.46920 -13.26372 -12.94154 -12.90156 -12.56178 -12.49162 -12.35122 -12.29472 -12.13582 -11.97862 -11.73702 -11.65664 -11.27020 -11.19902 -11.02261 -11.01348 -10.92771 -10.82177 -10.44534 -10.37282 -9.62801 -9.35829 -9.21979 -8.93547 -8.76319 -7.52982 -7.48010 -7.09916 -4.39589 -0.23275 2.39915 2.77189 2.87669 3.16883 3.17226 3.30048 3.31237 3.39279 3.57183 3.79478 3.96026 4.04184 4.38152 4.57717 4.62421 4.75908 4.84604 5.05582 5.27652 5.29326 5.40260 5.47260 5.53745 5.68907 5.84739 5.88784 5.97458 6.11411 6.19699 6.34449 6.38769 6.51389 6.70435 6.73875 7.02905 7.23749 7.44640 7.69761 7.85143 7.87911 7.90965 7.98502 8.23674 8.37535 8.80828 8.83435 8.95433 10.09595 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.002142 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.272602 B =13065.895201 C =14428.152170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.040 3.960 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.086 4.086 12 C -0.253 4.253 13 C -0.069 4.069 14 C -0.186 4.186 15 C -0.069 4.069 16 C 0.513 3.487 17 O -0.520 6.520 18 N -0.747 5.747 19 C 0.116 3.884 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.618 4.618 23 S 2.613 3.387 24 N -1.254 6.254 25 O -0.961 6.961 26 O -0.963 6.963 27 H 0.299 0.701 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.395 0.605 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.412 0.588 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.292 -6.917 -11.200 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.182 4.182 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.090 0.910 9 C 0.113 3.887 10 C -0.235 4.235 11 C -0.105 4.105 12 C -0.273 4.273 13 C -0.087 4.087 14 C -0.187 4.187 15 C -0.109 4.109 16 C 0.301 3.699 17 O -0.393 6.393 18 N -0.402 5.402 19 C -0.008 4.008 20 C -0.160 4.160 21 C -0.151 4.151 22 C -0.748 4.748 23 S 2.705 3.295 24 N -0.927 5.927 25 O -0.951 6.951 26 O -0.952 6.952 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.237 0.763 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 20.186 -5.068 -9.125 22.725 hybrid contribution 0.126 -1.895 -1.472 2.402 sum 20.312 -6.963 -10.597 23.944 Atomic orbital electron populations 1.70452 1.08187 1.34254 1.29340 1.26929 0.95683 1.04164 0.91397 0.83708 0.75735 0.74146 0.77978 1.19895 1.20018 1.20283 1.20429 1.02663 0.94002 1.37357 0.91017 1.17398 0.90206 0.91816 0.89279 1.21139 1.03565 0.96977 1.01820 1.20604 0.98301 0.93243 0.98320 1.20265 1.04961 0.95808 1.06231 1.20354 0.96124 0.95784 0.96465 1.19014 1.02733 0.93563 1.03431 1.20240 0.89904 1.02410 0.98355 1.21228 0.85864 0.74968 0.87868 1.90690 1.87221 1.46706 1.14688 1.46108 1.05567 1.77958 1.10533 1.21251 0.81906 1.02566 0.95126 1.21722 0.92571 1.03254 0.98485 1.21251 0.93091 1.04635 0.96139 1.30394 1.20002 1.12053 1.12364 1.04795 0.76141 0.74784 0.73815 1.53167 1.21312 1.94620 1.23559 1.93633 1.83098 1.41920 1.76404 1.93627 1.84093 1.50113 1.67347 0.88740 0.87758 0.89385 0.89454 0.89630 0.90665 0.88668 0.77132 0.91467 0.91686 0.90806 0.90648 0.89472 0.89591 0.84527 0.84445 0.76254 0.75086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.20 12.32 55.55 0.68 -20.52 16 2 C 0.04 1.02 4.94 -17.34 -0.09 0.93 16 3 Si 1.06 21.98 30.00 -169.99 -5.10 16.88 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.52 -13.61 8.08 -37.74 -0.30 -13.91 16 8 H 0.07 1.85 6.73 -52.49 -0.35 1.50 16 9 C 0.12 3.09 5.30 -106.82 -0.57 2.52 16 10 C -0.22 -5.72 7.95 -38.87 -0.31 -6.03 16 11 C -0.09 -2.09 10.02 -39.66 -0.40 -2.49 16 12 C -0.25 -5.89 10.05 -39.29 -0.39 -6.28 16 13 C -0.07 -1.59 9.66 -39.66 -0.38 -1.97 16 14 C -0.19 -4.46 4.43 -103.91 -0.46 -4.92 16 15 C -0.07 -1.34 5.18 -29.03 -0.15 -1.49 16 16 C 0.51 9.89 7.46 -10.99 -0.08 9.80 16 17 O -0.52 -12.56 16.03 5.56 0.09 -12.47 16 18 N -0.75 -10.22 5.56 -60.30 -0.33 -10.56 16 19 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 20 C -0.12 -0.88 5.33 -26.73 -0.14 -1.03 16 21 C -0.11 -0.74 5.22 -26.73 -0.14 -0.88 16 22 C -0.62 -2.29 6.09 37.16 0.23 -2.07 16 23 S 2.61 16.50 5.97 -107.50 -0.64 15.85 16 24 N -1.25 -3.72 9.43 60.35 0.57 -3.15 16 25 O -0.96 -10.29 18.10 -57.54 -1.04 -11.33 16 26 O -0.96 -10.11 18.10 -57.54 -1.04 -11.15 16 27 H 0.30 8.13 6.68 -40.82 -0.27 7.86 16 28 H 0.10 2.84 6.49 -52.49 -0.34 2.50 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.10 1.81 7.06 -51.93 -0.37 1.44 16 34 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.14 0.20 8.14 -51.92 -0.42 -0.23 16 42 H 0.14 0.23 8.14 -51.92 -0.42 -0.19 16 43 H 0.41 -0.05 8.83 -34.47 -0.30 -0.35 16 44 H 0.42 1.05 8.96 -34.47 -0.31 0.74 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -39.01 382.81 -10.42 -49.43 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.16 Total: 7.70 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -3.21 Total: -26.45 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.92 Total: -34.23 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.99 Total: -34.96 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.10 Total: 16.88 kcal Atomic # 16 Polarization: 16.50 SS G_CDS: -0.64 Total: 15.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.01 -10.42 -49.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326384599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.620 kcal (2) G-P(sol) polarization free energy of solvation -39.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds