Wall clock time and date at job start Sat Apr 11 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47103 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.47010 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47375 * 179.97438 * 21 20 19 23 23 S 1.81393 * 109.47543 * 180.02562 * 22 21 20 24 24 N 1.65600 * 104.45141 * 179.97438 * 23 22 21 25 25 O 1.42098 * 110.54538 * 291.62819 * 23 22 21 26 26 O 1.42101 * 110.54196 * 68.37384 * 23 22 21 27 27 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 28 28 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 33 33 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 34 34 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 35 35 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 36 36 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 37 37 H 1.08992 * 109.47355 * 299.99774 * 20 19 18 38 38 H 1.09003 * 109.47571 * 60.00046 * 20 19 18 39 39 H 1.09001 * 109.47065 * 300.00007 * 21 20 19 40 40 H 1.08998 * 109.46830 * 60.00268 * 21 20 19 41 41 H 1.09003 * 109.46941 * 300.00573 * 22 21 20 42 42 H 1.09008 * 109.47151 * 59.99876 * 22 21 20 43 43 H 0.96991 * 120.00017 * 0.02562 * 24 23 22 44 44 H 0.97007 * 119.99980 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7700 -3.9356 -1.4474 21 6 9.1408 -3.9018 -0.7685 22 6 10.2376 -4.0302 -1.8274 23 16 11.8628 -3.9910 -1.0226 24 7 12.9444 -4.1378 -2.2680 25 8 12.1212 -2.7019 -0.4834 26 8 12.0628 -5.1637 -0.2454 27 1 -0.4849 -0.8357 -0.0852 28 1 0.0691 -1.3040 1.8430 29 1 -0.9698 -3.3393 2.7431 30 1 -0.2416 -5.5537 1.9556 31 1 1.5304 -5.7534 0.2610 32 1 2.7709 -4.7177 -1.4995 33 1 2.8121 -2.9465 -1.6708 34 1 5.2988 -3.9312 -2.0021 35 1 6.7917 -2.8647 0.1451 36 1 6.7498 -4.6358 0.3162 37 1 7.6517 -4.8785 -1.9811 38 1 7.6934 -3.1072 -2.1518 39 1 9.2589 -2.9586 -0.2351 40 1 9.2178 -4.7299 -0.0640 41 1 10.1193 -4.9736 -2.3606 42 1 10.1608 -3.2024 -2.5324 43 1 12.6254 -4.2183 -3.1804 44 1 13.8970 -4.1424 -2.0850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326384599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:33 Heat of formation + Delta-G solvation = -148.613093 kcal Electronic energy + Delta-G solvation = -26251.652944 eV Core-core repulsion = 22293.333020 eV Total energy + Delta-G solvation = -3958.319924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83478 -39.35530 -38.03805 -37.24826 -36.94644 -35.73061 -34.83478 -33.98651 -33.51825 -31.10399 -30.54685 -28.36325 -26.80615 -24.90076 -22.82284 -22.54200 -22.25261 -21.02727 -20.32974 -19.60544 -18.52058 -18.17130 -17.73759 -17.32537 -17.15280 -16.79888 -16.58782 -16.31088 -16.20806 -15.86489 -15.60453 -15.29357 -14.70131 -14.41422 -14.18748 -13.86966 -13.76312 -13.65498 -13.42509 -13.19093 -13.12775 -13.03118 -12.97352 -12.89406 -12.64602 -12.56972 -12.33496 -12.23282 -11.98102 -11.72112 -11.57820 -11.47352 -11.23389 -11.20873 -10.84317 -10.77843 -10.01834 -9.43889 -9.42001 -9.04792 -6.38672 -0.69517 0.91929 0.99449 1.47502 1.62784 1.76959 1.81599 2.00763 2.31502 2.35542 2.72443 2.76388 3.45821 3.47720 3.59934 3.88580 4.04313 4.10085 4.19238 4.22947 4.31088 4.42810 4.51686 4.58675 4.63156 4.64933 4.70582 4.73641 4.90769 4.99873 5.08466 5.16066 5.22478 5.31671 5.33667 5.50789 5.56028 5.80959 5.84956 5.99702 6.05959 6.30239 6.40564 6.46127 6.69025 6.87661 7.03326 7.44741 8.09361 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.002142 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.272602 B =13065.895201 C =14428.152170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.004 3.996 3 Si 1.107 2.893 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.084 3.916 10 C -0.246 4.246 11 C -0.098 4.098 12 C -0.252 4.252 13 C -0.081 4.081 14 C -0.191 4.191 15 C -0.069 4.069 16 C 0.513 3.487 17 O -0.579 6.579 18 N -0.722 5.722 19 C 0.109 3.891 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.593 4.593 23 S 2.619 3.381 24 N -1.239 6.239 25 O -1.014 7.014 26 O -1.012 7.012 27 H 0.284 0.716 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.417 0.583 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.428 0.572 44 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.623 -8.279 -14.063 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.212 4.212 3 Si 0.925 3.075 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.081 3.919 10 C -0.266 4.266 11 C -0.116 4.116 12 C -0.271 4.271 13 C -0.099 4.099 14 C -0.193 4.193 15 C -0.108 4.108 16 C 0.301 3.699 17 O -0.458 6.458 18 N -0.376 5.376 19 C -0.015 4.015 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.726 4.726 23 S 2.714 3.286 24 N -0.917 5.917 25 O -1.003 7.003 26 O -1.002 7.002 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.254 0.746 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.190 0.810 42 H 0.187 0.813 43 H 0.258 0.742 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 21.574 -6.460 -12.058 25.546 hybrid contribution -0.319 -1.651 -0.603 1.786 sum 21.256 -8.111 -12.661 26.036 Atomic orbital electron populations 1.70554 1.08885 1.33198 1.31727 1.28228 0.95741 1.07196 0.90079 0.83133 0.74923 0.70531 0.78895 1.19510 1.20271 1.17371 1.20534 1.02671 0.94843 1.38758 0.91237 1.17805 0.90810 0.93408 0.89835 1.21149 1.05218 0.96919 1.03287 1.20894 0.98746 0.93209 0.98748 1.20723 1.04484 0.96336 1.05566 1.20817 0.95765 0.97105 0.96192 1.19557 1.03196 0.92878 1.03654 1.20273 0.88802 1.04556 0.97193 1.21154 0.87089 0.74507 0.87193 1.90673 1.88071 1.49900 1.17153 1.45848 1.04923 1.75456 1.11411 1.21426 0.82304 1.01100 0.96661 1.21662 0.90526 1.05380 0.97131 1.21339 0.93859 1.04273 0.97138 1.30164 1.15369 1.15429 1.11605 1.04216 0.77361 0.72929 0.74046 1.52766 1.21016 1.94130 1.23779 1.93575 1.84572 1.43852 1.78307 1.93571 1.85457 1.51395 1.69727 0.90405 0.89959 0.87370 0.86364 0.86192 0.86657 0.88535 0.74616 0.93637 0.92714 0.88238 0.88863 0.90408 0.89988 0.81036 0.81302 0.74201 0.74660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.13 12.32 21.82 0.27 -44.86 16 2 C 0.00 0.19 4.94 85.25 0.42 0.61 16 3 Si 1.11 44.69 30.00 68.60 2.06 46.75 16 4 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 7 C -0.54 -29.18 8.08 23.46 0.19 -28.99 16 8 H 0.07 3.66 6.73 -2.91 -0.02 3.64 16 9 C 0.08 4.59 5.30 -21.29 -0.11 4.48 16 10 C -0.25 -13.57 7.95 22.73 0.18 -13.39 16 11 C -0.10 -4.77 10.02 22.22 0.22 -4.55 16 12 C -0.25 -11.34 10.05 22.46 0.23 -11.11 16 13 C -0.08 -3.58 9.66 22.22 0.21 -3.36 16 14 C -0.19 -9.09 4.43 -19.40 -0.09 -9.18 16 15 C -0.07 -2.53 5.18 29.10 0.15 -2.38 16 16 C 0.51 19.15 7.46 87.66 0.65 19.81 16 17 O -0.58 -28.29 16.03 -3.04 -0.05 -28.34 16 18 N -0.72 -18.03 5.56 -463.07 -2.57 -20.60 16 19 C 0.11 2.43 5.67 86.38 0.49 2.92 16 20 C -0.11 -1.17 5.33 30.59 0.16 -1.01 16 21 C -0.13 -1.37 5.22 30.59 0.16 -1.21 16 22 C -0.59 -2.15 6.09 71.98 0.44 -1.71 16 23 S 2.62 30.23 5.97 -56.49 -0.34 29.89 16 24 N -1.24 -4.89 9.43 37.02 0.35 -4.54 16 25 O -1.01 -21.82 18.10 -127.65 -2.31 -24.13 16 26 O -1.01 -21.16 18.10 -127.65 -2.31 -23.48 16 27 H 0.28 16.22 6.68 -92.71 -0.62 15.60 16 28 H 0.08 4.77 6.49 -2.91 -0.02 4.75 16 29 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 30 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 32 H 0.12 3.26 8.05 -2.39 -0.02 3.24 16 33 H 0.10 3.54 7.06 -2.39 -0.02 3.52 16 34 H 0.42 6.84 8.47 -92.71 -0.79 6.05 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.17 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.17 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.43 -1.47 8.83 -96.76 -0.85 -2.32 16 44 H 0.42 1.55 8.96 -96.74 -0.87 0.69 16 Total: -1.00 -90.44 382.81 -2.90 -93.34 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -1.31 Total: 25.03 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 3.31 Total: -49.07 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -1.95 Total: -70.00 kcal Atomic # 8 Polarization: -71.27 SS G_CDS: -4.67 Total: -75.94 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.06 Total: 46.75 kcal Atomic # 16 Polarization: 30.23 SS G_CDS: -0.34 Total: 29.89 kcal Total: -90.44 -2.90 -93.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326384599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.272 kcal (2) G-P(sol) polarization free energy of solvation -90.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds