Wall clock time and date at job start Sat Apr 11 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99811 * 2 1 4 4 H 1.48505 * 109.47371 * 269.99629 * 3 2 1 5 5 H 1.48501 * 109.47275 * 29.99902 * 3 2 1 6 6 H 1.48509 * 109.47151 * 149.99799 * 3 2 1 7 7 C 1.37875 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.52428 * 300.08208 * 9 7 2 11 11 C 1.53042 * 109.49944 * 179.97438 * 9 7 2 12 12 C 1.53040 * 109.52589 * 178.67935 * 11 9 7 13 13 C 1.53187 * 109.31515 * 61.37449 * 12 11 9 14 14 N 1.46928 * 108.77529 * 305.36238 * 13 12 11 15 15 C 1.34774 * 120.63239 * 233.59008 * 14 13 12 16 16 O 1.21357 * 120.00111 * 171.36354 * 15 14 13 17 17 C 1.49449 * 120.00024 * 351.36723 * 15 14 13 18 18 O 1.21341 * 119.99905 * 353.22851 * 17 15 14 19 19 N 1.34784 * 120.00048 * 173.23478 * 17 15 14 20 20 C 1.47549 * 125.71508 * 0.02562 * 19 17 15 21 21 C 1.56192 * 105.82284 * 176.45564 * 20 19 17 22 22 H 1.08997 * 116.99234 * 159.87781 * 21 20 19 23 23 C 1.57658 * 98.58042 * 33.00097 * 21 20 19 24 24 C 1.48626 * 125.71678 * 179.71150 * 19 17 15 25 25 H 1.08999 * 113.89206 * 29.06169 * 24 19 17 26 26 C 1.55787 * 106.48815 * 261.91587 * 24 19 17 27 27 S 1.83042 * 102.82276 * 289.89586 * 26 24 19 28 28 O 1.42094 * 109.25432 * 111.36466 * 27 26 24 29 29 C 1.46927 * 118.74012 * 53.60809 * 14 13 12 30 30 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.46055 * 58.66048 * 11 9 7 32 32 H 1.09000 * 109.45868 * 298.68649 * 11 9 7 33 33 H 1.09003 * 109.49336 * 181.32636 * 12 11 9 34 34 H 1.08999 * 109.49444 * 301.38330 * 12 11 9 35 35 H 1.08997 * 109.59318 * 65.14824 * 13 12 11 36 36 H 1.09004 * 109.58800 * 185.58248 * 13 12 11 37 37 H 1.09003 * 110.18184 * 295.54054 * 20 19 17 38 38 H 1.08998 * 110.18249 * 57.36959 * 20 19 17 39 39 H 1.09000 * 111.56957 * 68.76988 * 23 21 20 40 40 H 1.08998 * 111.57006 * 194.08353 * 23 21 20 41 41 H 1.08995 * 110.76068 * 48.36414 * 26 24 19 42 42 H 1.09006 * 110.75401 * 171.55014 * 26 24 19 43 43 H 1.09008 * 109.58400 * 66.17898 * 29 14 13 44 44 H 1.08992 * 109.59423 * 186.60555 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6227 -2.5570 0.8892 11 6 2.2451 -3.6628 0.0005 12 6 1.4809 -4.9883 0.0338 13 6 0.6057 -5.1002 -1.2185 14 7 -0.2527 -3.9107 -1.3033 15 6 -1.5891 -4.0356 -1.4257 16 8 -2.3006 -3.0565 -1.3375 17 6 -2.1946 -5.3799 -1.6702 18 8 -1.4803 -6.3379 -1.8807 19 7 -3.5342 -5.5280 -1.6570 20 6 -4.5172 -4.4544 -1.4160 21 6 -5.9214 -5.1144 -1.5955 22 1 -6.7704 -4.6021 -1.1429 23 6 -5.5736 -6.5564 -1.0613 24 6 -4.2690 -6.7990 -1.8891 25 1 -3.7152 -7.6896 -1.5921 26 6 -4.7166 -6.7847 -3.3812 27 16 -6.0078 -5.4875 -3.4056 28 8 -5.5344 -4.3690 -4.1430 29 6 0.3734 -2.5825 -1.2524 30 1 -0.4850 0.8400 -0.0004 31 1 2.8874 -3.5918 0.8783 32 1 2.8561 -3.6185 -0.9011 33 1 2.1895 -5.8163 0.0575 34 1 0.8511 -5.0229 0.9228 35 1 1.2395 -5.1571 -2.1034 36 1 -0.0144 -5.9942 -1.1523 37 1 -4.4106 -4.0674 -0.4026 38 1 -4.3833 -3.6522 -2.1416 39 1 -5.3765 -6.5498 0.0107 40 1 -6.3498 -7.2770 -1.3185 41 1 -3.8843 -6.5159 -4.0317 42 1 -5.1335 -7.7500 -3.6687 43 1 0.9884 -2.4342 -2.1401 44 1 -0.3997 -1.8155 -1.2086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329740899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:46 Heat of formation + Delta-G solvation = -62.427389 kcal Electronic energy + Delta-G solvation = -28836.756860 eV Core-core repulsion = 24882.174228 eV Total energy + Delta-G solvation = -3954.582631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83752 -39.14939 -37.64514 -36.77548 -35.94577 -33.33329 -32.07499 -31.64457 -30.73324 -29.75857 -26.53352 -26.05542 -25.01638 -23.61908 -22.15140 -21.72993 -20.89407 -19.60248 -18.73464 -17.73431 -17.14315 -16.91441 -16.56830 -15.92274 -15.78713 -15.50960 -14.80772 -14.66153 -14.46045 -13.97068 -13.77090 -13.53078 -13.44681 -13.32753 -12.97291 -12.85358 -12.77007 -12.57316 -12.34258 -12.15910 -12.04235 -11.88370 -11.77260 -11.53230 -11.28401 -10.97022 -10.66930 -10.46867 -10.28749 -10.09481 -10.07907 -9.86029 -9.22347 -9.11645 -9.07337 -8.57809 -8.52453 -8.44475 -7.81405 -6.00922 -4.09852 1.38136 1.74396 2.03296 2.40061 3.30695 3.37829 3.40294 3.40561 3.58915 3.68446 4.00550 4.10061 4.31700 4.42107 4.51800 4.62900 4.92434 5.16571 5.22524 5.29030 5.34585 5.40953 5.57964 5.58738 5.64477 5.67912 5.71814 5.88226 6.02028 6.20839 6.32801 6.41352 6.59265 6.68669 6.84555 6.97926 7.02552 7.13159 7.18188 7.57560 7.76332 7.86541 7.95487 8.15209 8.35373 8.58303 8.94177 9.55834 11.04409 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003329 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.385629 B = 8408.964472 C = 9469.823925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.042 3.958 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.072 3.928 14 N -0.570 5.570 15 C 0.494 3.506 16 O -0.513 6.513 17 C 0.527 3.473 18 O -0.516 6.516 19 N -0.606 5.606 20 C 0.107 3.893 21 C -0.404 4.404 22 H 0.159 0.841 23 C -0.120 4.120 24 C 0.137 3.863 25 H 0.123 0.877 26 C -0.445 4.445 27 S 1.222 4.778 28 O -0.833 6.833 29 C 0.109 3.891 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 -18.643 -3.466 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.171 4.171 13 C -0.050 4.050 14 N -0.302 5.302 15 C 0.275 3.725 16 O -0.389 6.389 17 C 0.313 3.687 18 O -0.393 6.393 19 N -0.342 5.342 20 C -0.016 4.016 21 C -0.521 4.521 22 H 0.177 0.823 23 C -0.159 4.159 24 C 0.034 3.966 25 H 0.141 0.859 26 C -0.583 4.583 27 S 1.419 4.581 28 O -0.829 6.829 29 C -0.011 4.011 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.066 0.934 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.952 -18.018 -4.358 25.120 hybrid contribution 2.680 1.622 0.690 3.208 sum -14.272 -16.396 -3.668 22.045 Atomic orbital electron populations 1.69884 1.05771 1.26877 1.49331 1.25067 0.94902 0.99326 0.94773 0.86567 0.79799 0.83351 0.78144 1.20620 1.21175 1.19883 1.21087 0.92968 0.90027 1.51819 0.92238 1.18960 0.92622 0.92508 0.93661 0.95230 1.21654 0.98547 0.94212 1.00583 1.21954 0.98595 0.98891 0.97633 1.22664 0.94650 0.89754 0.97960 1.48419 1.04281 1.10195 1.67296 1.19706 0.84017 0.88183 0.80635 1.90773 1.59925 1.38932 1.49282 1.20616 0.80992 0.90248 0.76856 1.90468 1.58232 1.42015 1.48549 1.49021 1.04983 1.10637 1.69537 1.22592 0.84378 0.89659 1.04960 1.29903 1.01872 1.00978 1.19330 0.82293 1.23706 0.96091 0.94295 1.01834 1.23194 0.92370 0.88910 0.92119 0.85882 1.28811 1.14220 1.14507 1.00767 1.70982 1.09082 0.92515 0.85564 1.93210 1.80307 1.48095 1.61248 1.22503 0.98811 0.80607 0.99187 0.92630 0.92989 0.93155 0.92084 0.92472 0.92189 0.85915 0.89531 0.88447 0.88649 0.87711 0.87855 0.84920 0.93367 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.09 11.40 55.43 0.63 -25.46 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.44 8.56 -34.44 -0.29 -14.74 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.04 1.07 2.25 -91.65 -0.21 0.86 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.38 5.11 -26.69 -0.14 -2.52 16 12 C -0.13 -2.42 6.08 -26.61 -0.16 -2.59 16 13 C 0.07 1.37 5.98 -3.71 -0.02 1.34 16 14 N -0.57 -12.75 2.97 -173.27 -0.51 -13.26 16 15 C 0.49 10.96 7.69 -11.59 -0.09 10.87 16 16 O -0.51 -12.69 13.64 5.49 0.07 -12.62 16 17 C 0.53 9.79 7.78 -11.58 -0.09 9.70 16 18 O -0.52 -9.57 13.46 5.50 0.07 -9.50 16 19 N -0.61 -9.01 2.88 -158.49 -0.46 -9.47 16 20 C 0.11 1.53 4.67 -1.76 -0.01 1.52 16 21 C -0.40 -3.16 5.76 -22.47 -0.13 -3.29 16 22 H 0.16 0.82 8.14 -51.93 -0.42 0.39 16 23 C -0.12 -0.69 6.28 -22.36 -0.14 -0.83 16 24 C 0.14 1.31 4.46 -63.44 -0.28 1.03 16 25 H 0.12 1.13 8.04 -51.93 -0.42 0.71 16 26 C -0.44 -3.63 6.94 38.64 0.27 -3.37 16 27 S 1.22 9.48 14.15 -107.50 -1.52 7.96 16 28 O -0.83 -13.29 17.10 -35.23 -0.60 -13.90 16 29 C 0.11 2.77 5.41 -3.71 -0.02 2.75 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.12 2.27 4.32 -54.76 -0.24 2.03 16 37 H 0.09 1.31 7.98 -51.93 -0.41 0.89 16 38 H 0.10 1.78 6.43 -51.93 -0.33 1.44 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.14 8.12 -51.93 -0.42 -0.28 16 41 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.12 3.60 5.13 -51.93 -0.27 3.33 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -38.87 354.36 -9.68 -48.56 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.28 Total: 3.34 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.41 Total: 2.39 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.34 Total: -48.19 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.45 Total: -36.01 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 9.48 SS G_CDS: -1.52 Total: 7.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.87 -9.68 -48.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.868 kcal (2) G-P(sol) polarization free energy of solvation -38.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds