Wall clock time and date at job start Sat Apr 11 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99811 * 2 1 4 4 H 1.48505 * 109.47371 * 269.99629 * 3 2 1 5 5 H 1.48501 * 109.47275 * 29.99902 * 3 2 1 6 6 H 1.48509 * 109.47151 * 149.99799 * 3 2 1 7 7 C 1.37875 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.52428 * 300.08208 * 9 7 2 11 11 C 1.53042 * 109.49944 * 179.97438 * 9 7 2 12 12 C 1.53040 * 109.52589 * 178.67935 * 11 9 7 13 13 C 1.53187 * 109.31515 * 61.37449 * 12 11 9 14 14 N 1.46928 * 108.77529 * 305.36238 * 13 12 11 15 15 C 1.34774 * 120.63239 * 233.59008 * 14 13 12 16 16 O 1.21357 * 120.00111 * 171.36354 * 15 14 13 17 17 C 1.49449 * 120.00024 * 351.36723 * 15 14 13 18 18 O 1.21341 * 119.99905 * 353.22851 * 17 15 14 19 19 N 1.34784 * 120.00048 * 173.23478 * 17 15 14 20 20 C 1.47549 * 125.71508 * 0.02562 * 19 17 15 21 21 C 1.56192 * 105.82284 * 176.45564 * 20 19 17 22 22 H 1.08997 * 116.99234 * 159.87781 * 21 20 19 23 23 C 1.57658 * 98.58042 * 33.00097 * 21 20 19 24 24 C 1.48626 * 125.71678 * 179.71150 * 19 17 15 25 25 H 1.08999 * 113.89206 * 29.06169 * 24 19 17 26 26 C 1.55787 * 106.48815 * 261.91587 * 24 19 17 27 27 S 1.83042 * 102.82276 * 289.89586 * 26 24 19 28 28 O 1.42094 * 109.25432 * 111.36466 * 27 26 24 29 29 C 1.46927 * 118.74012 * 53.60809 * 14 13 12 30 30 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.46055 * 58.66048 * 11 9 7 32 32 H 1.09000 * 109.45868 * 298.68649 * 11 9 7 33 33 H 1.09003 * 109.49336 * 181.32636 * 12 11 9 34 34 H 1.08999 * 109.49444 * 301.38330 * 12 11 9 35 35 H 1.08997 * 109.59318 * 65.14824 * 13 12 11 36 36 H 1.09004 * 109.58800 * 185.58248 * 13 12 11 37 37 H 1.09003 * 110.18184 * 295.54054 * 20 19 17 38 38 H 1.08998 * 110.18249 * 57.36959 * 20 19 17 39 39 H 1.09000 * 111.56957 * 68.76988 * 23 21 20 40 40 H 1.08998 * 111.57006 * 194.08353 * 23 21 20 41 41 H 1.08995 * 110.76068 * 48.36414 * 26 24 19 42 42 H 1.09006 * 110.75401 * 171.55014 * 26 24 19 43 43 H 1.09008 * 109.58400 * 66.17898 * 29 14 13 44 44 H 1.08992 * 109.59423 * 186.60555 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6227 -2.5570 0.8892 11 6 2.2451 -3.6628 0.0005 12 6 1.4809 -4.9883 0.0338 13 6 0.6057 -5.1002 -1.2185 14 7 -0.2527 -3.9107 -1.3033 15 6 -1.5891 -4.0356 -1.4257 16 8 -2.3006 -3.0565 -1.3375 17 6 -2.1946 -5.3799 -1.6702 18 8 -1.4803 -6.3379 -1.8807 19 7 -3.5342 -5.5280 -1.6570 20 6 -4.5172 -4.4544 -1.4160 21 6 -5.9214 -5.1144 -1.5955 22 1 -6.7704 -4.6021 -1.1429 23 6 -5.5736 -6.5564 -1.0613 24 6 -4.2690 -6.7990 -1.8891 25 1 -3.7152 -7.6896 -1.5921 26 6 -4.7166 -6.7847 -3.3812 27 16 -6.0078 -5.4875 -3.4056 28 8 -5.5344 -4.3690 -4.1430 29 6 0.3734 -2.5825 -1.2524 30 1 -0.4850 0.8400 -0.0004 31 1 2.8874 -3.5918 0.8783 32 1 2.8561 -3.6185 -0.9011 33 1 2.1895 -5.8163 0.0575 34 1 0.8511 -5.0229 0.9228 35 1 1.2395 -5.1571 -2.1034 36 1 -0.0144 -5.9942 -1.1523 37 1 -4.4106 -4.0674 -0.4026 38 1 -4.3833 -3.6522 -2.1416 39 1 -5.3765 -6.5498 0.0107 40 1 -6.3498 -7.2770 -1.3185 41 1 -3.8843 -6.5159 -4.0317 42 1 -5.1335 -7.7500 -3.6687 43 1 0.9884 -2.4342 -2.1401 44 1 -0.3997 -1.8155 -1.2086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329740899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:45 Heat of formation + Delta-G solvation = -93.208727 kcal Electronic energy + Delta-G solvation = -28838.091639 eV Core-core repulsion = 24882.174228 eV Total energy + Delta-G solvation = -3955.917410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25294 -40.53553 -39.05812 -38.55100 -36.97978 -35.34887 -33.65115 -32.99331 -31.74136 -31.52638 -27.86450 -27.30139 -26.91817 -25.07499 -23.68756 -23.08038 -22.03403 -21.04182 -20.29807 -18.92398 -18.55245 -18.27088 -17.94820 -17.52109 -17.33561 -16.81592 -16.53289 -15.98495 -15.72667 -15.57215 -15.15558 -15.04231 -14.74901 -14.57082 -14.39691 -14.21843 -14.04060 -13.97000 -13.94769 -13.57309 -13.21461 -13.01128 -12.92372 -12.64955 -12.59192 -12.53403 -12.37968 -12.31123 -12.14724 -11.82062 -11.65967 -11.21540 -11.06556 -10.93696 -10.63055 -10.40232 -10.09379 -9.67274 -9.36629 -8.18219 -6.36183 0.16140 0.71524 1.07113 1.35933 1.36764 1.37397 1.48607 1.93790 2.19201 2.36923 2.64376 2.96647 3.10452 3.24008 3.40004 3.59570 3.83514 4.00462 4.06878 4.17093 4.24176 4.29445 4.44659 4.48069 4.61431 4.66449 4.69879 4.74076 4.77778 4.86427 4.93352 4.96257 5.02925 5.08113 5.13449 5.14207 5.20055 5.36803 5.49118 5.74041 5.76577 5.85333 6.14366 6.24360 6.47095 6.75052 6.83988 7.34370 8.85658 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003329 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.385629 B = 8408.964472 C = 9469.823925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.041 3.959 10 H -0.011 1.011 11 C -0.106 4.106 12 C -0.123 4.123 13 C 0.071 3.929 14 N -0.577 5.577 15 C 0.477 3.523 16 O -0.553 6.553 17 C 0.528 3.472 18 O -0.518 6.518 19 N -0.602 5.602 20 C 0.094 3.906 21 C -0.387 4.387 22 H 0.195 0.805 23 C -0.100 4.100 24 C 0.119 3.881 25 H 0.137 0.863 26 C -0.441 4.441 27 S 1.295 4.705 28 O -0.924 6.924 29 C 0.120 3.880 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.172 0.828 41 H 0.062 0.938 42 H 0.193 0.807 43 H 0.042 0.958 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.390 -22.204 -3.059 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.022 3.978 10 H 0.007 0.993 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.050 4.050 14 N -0.309 5.309 15 C 0.260 3.740 16 O -0.432 6.432 17 C 0.312 3.688 18 O -0.397 6.397 19 N -0.336 5.336 20 C -0.030 4.030 21 C -0.504 4.504 22 H 0.212 0.788 23 C -0.138 4.138 24 C 0.019 3.981 25 H 0.154 0.846 26 C -0.580 4.580 27 S 1.494 4.506 28 O -0.919 6.919 29 C -0.001 4.001 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.118 0.882 40 H 0.190 0.810 41 H 0.081 0.919 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.022 -21.629 -3.963 28.430 hybrid contribution 2.960 2.685 0.589 4.040 sum -15.062 -18.944 -3.374 24.436 Atomic orbital electron populations 1.70085 1.07558 1.27422 1.50472 1.25948 0.95599 1.03153 0.94342 0.85489 0.78792 0.78706 0.78299 1.20130 1.21100 1.18424 1.21500 0.93419 0.91195 1.51391 0.91629 1.18889 0.92997 0.94180 0.91739 0.99270 1.21547 0.97685 0.93857 1.01243 1.21919 0.98813 0.98602 0.96785 1.22915 0.94628 0.88531 0.98909 1.48488 1.05082 1.10067 1.67230 1.20606 0.83874 0.89904 0.79646 1.90746 1.60851 1.40896 1.50721 1.19746 0.82722 0.88249 0.78132 1.90431 1.58683 1.41052 1.49531 1.49204 1.03813 1.13230 1.67379 1.22601 0.88500 0.89510 1.02359 1.30096 0.98595 1.02227 1.19530 0.78824 1.23886 0.95177 0.93416 1.01335 1.23886 0.93731 0.86633 0.93884 0.84565 1.28895 1.12803 1.17209 0.99076 1.69935 1.07124 0.89707 0.83785 1.93069 1.81983 1.51951 1.64915 1.21988 0.97500 0.81745 0.98881 0.93030 0.92249 0.92411 0.87692 0.93238 0.91049 0.84705 0.91204 0.93546 0.88246 0.81045 0.91873 0.78972 0.93985 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.46 11.40 21.45 0.24 -57.22 16 2 C 0.01 0.52 5.30 84.65 0.45 0.97 16 3 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -30.69 8.56 25.60 0.22 -30.47 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.04 2.21 2.25 -11.46 -0.03 2.18 16 10 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 11 C -0.11 -4.46 5.11 30.62 0.16 -4.30 16 12 C -0.12 -4.35 6.08 30.67 0.19 -4.17 16 13 C 0.07 2.67 5.98 86.36 0.52 3.19 16 14 N -0.58 -27.16 2.97 -820.46 -2.44 -29.60 16 15 C 0.48 22.68 7.69 87.27 0.67 23.35 16 16 O -0.55 -30.13 13.64 -3.27 -0.04 -30.18 16 17 C 0.53 20.20 7.78 87.27 0.68 20.88 16 18 O -0.52 -19.06 13.46 -3.22 -0.04 -19.11 16 19 N -0.60 -18.01 2.88 -773.69 -2.23 -20.23 16 20 C 0.09 2.79 4.67 87.29 0.41 3.20 16 21 C -0.39 -5.07 5.76 33.35 0.19 -4.88 16 22 H 0.19 1.25 8.14 -2.39 -0.02 1.23 16 23 C -0.10 -0.63 6.28 33.43 0.21 -0.42 16 24 C 0.12 1.90 4.46 46.73 0.21 2.11 16 25 H 0.14 1.93 8.04 -2.39 -0.02 1.91 16 26 C -0.44 -5.87 6.94 72.95 0.51 -5.37 16 27 S 1.29 17.68 14.15 -56.49 -0.80 16.88 16 28 O -0.92 -30.81 17.10 -148.98 -2.55 -33.36 16 29 C 0.12 6.54 5.41 86.37 0.47 7.01 16 30 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.14 4.86 4.32 -47.31 -0.20 4.65 16 37 H 0.07 2.27 7.98 -2.39 -0.02 2.25 16 38 H 0.05 1.87 6.43 -2.39 -0.02 1.86 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.17 -1.01 8.12 -2.39 -0.02 -1.03 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.19 0.25 8.14 -2.38 -0.02 0.23 16 43 H 0.04 2.27 8.14 -2.38 -0.02 2.25 16 44 H 0.08 5.19 5.13 -2.39 -0.01 5.18 16 Total: -1.00 -97.12 354.36 -0.16 -97.28 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.82 Total: 14.69 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 4.84 Total: 13.28 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.42 Total: -107.05 kcal Atomic # 8 Polarization: -80.01 SS G_CDS: -2.64 Total: -82.64 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 17.68 SS G_CDS: -0.80 Total: 16.88 kcal Total: -97.12 -0.16 -97.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.068 kcal (2) G-P(sol) polarization free energy of solvation -97.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds