Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47465 * 270.00017 * 3 2 1 5 5 H 1.48505 * 109.47045 * 30.00508 * 3 2 1 6 6 H 1.48497 * 109.47049 * 149.99955 * 3 2 1 7 7 C 1.37873 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99540 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00377 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.49616 * 59.92552 * 9 7 2 11 11 C 1.53039 * 109.50195 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.53773 * 181.31446 * 11 9 7 13 13 C 1.53192 * 109.31281 * 298.63055 * 12 11 9 14 14 N 1.46930 * 108.77315 * 54.63979 * 13 12 11 15 15 C 1.34782 * 120.62965 * 126.36103 * 14 13 12 16 16 O 1.21349 * 119.99847 * 188.64617 * 15 14 13 17 17 C 1.49446 * 120.00048 * 8.65741 * 15 14 13 18 18 O 1.21351 * 119.99948 * 6.77066 * 17 15 14 19 19 N 1.34781 * 119.99924 * 186.77562 * 17 15 14 20 20 C 1.47551 * 125.71879 * 0.04243 * 19 17 15 21 21 C 1.56180 * 105.82517 * 176.45609 * 20 19 17 22 22 H 1.09001 * 117.72691 * 160.30438 * 21 20 19 23 23 C 1.57652 * 98.58462 * 32.99766 * 21 20 19 24 24 C 1.48633 * 125.71739 * 179.97438 * 19 17 15 25 25 H 1.08998 * 114.67777 * 28.63786 * 24 19 17 26 26 C 1.55793 * 106.48809 * 261.91566 * 24 19 17 27 27 S 1.83685 * 102.74148 * 290.04677 * 26 24 19 28 28 O 1.42106 * 109.46834 * 245.38846 * 27 26 24 29 29 C 1.46919 * 118.73953 * 306.64246 * 14 13 12 30 30 H 0.97000 * 120.00179 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.45719 * 61.29575 * 11 9 7 32 32 H 1.09000 * 109.44697 * 301.33010 * 11 9 7 33 33 H 1.09000 * 109.49471 * 178.68770 * 12 11 9 34 34 H 1.08996 * 109.50182 * 58.58756 * 12 11 9 35 35 H 1.08995 * 109.59231 * 294.85208 * 13 12 11 36 36 H 1.08998 * 109.58650 * 174.42201 * 13 12 11 37 37 H 1.09000 * 110.18244 * 57.36092 * 20 19 17 38 38 H 1.09005 * 110.17512 * 295.54232 * 20 19 17 39 39 H 1.08998 * 111.56886 * 68.76513 * 23 21 20 40 40 H 1.08998 * 111.57593 * 194.03001 * 23 21 20 41 41 H 1.09000 * 110.75634 * 171.73073 * 26 24 19 42 42 H 1.09003 * 110.75612 * 48.35981 * 26 24 19 43 43 H 1.09003 * 109.59116 * 173.14601 * 29 14 13 44 44 H 1.08998 * 109.58670 * 293.56881 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8750 -0.6797 0.8897 11 6 4.0224 -2.6367 -0.0001 12 6 5.5524 -2.6378 0.0336 13 6 6.0872 -1.9355 -1.2184 14 7 5.4866 -0.5972 -1.3028 15 6 6.2632 0.4977 -1.4238 16 8 5.7712 1.6034 -1.3352 17 6 7.7303 0.3500 -1.6674 18 8 8.2028 -0.7476 -1.8786 19 7 8.5286 1.4358 -1.6525 20 6 8.0906 2.8237 -1.4089 21 6 9.3924 3.6866 -1.4050 22 1 9.2902 4.7593 -1.5689 23 6 10.2223 2.8653 -2.4644 24 6 9.9978 1.4358 -1.8772 25 1 10.3602 0.6320 -2.5180 26 6 10.6607 1.4612 -0.4676 27 16 10.2730 3.1536 0.1320 28 8 11.4776 3.8950 0.2692 29 6 4.0236 -0.4747 -1.2466 30 1 -0.4850 0.8400 -0.0004 31 1 3.6786 -3.1435 -0.9018 32 1 3.6394 -3.1573 0.8776 33 1 5.9149 -3.6655 0.0570 34 1 5.8972 -2.1095 0.9224 35 1 5.8198 -2.5125 -2.1035 36 1 7.1715 -1.8457 -1.1519 37 1 7.5888 2.8957 -0.4440 38 1 7.4237 3.1528 -2.2058 39 1 9.7994 2.9589 -3.4646 40 1 11.2760 3.1438 -2.4513 41 1 11.7382 1.3160 -0.5448 42 1 10.2141 0.7091 0.1829 43 1 3.7466 0.5784 -1.1989 44 1 3.5844 -0.9303 -2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329740900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -81.048841 kcal Electronic energy + Delta-G solvation = -28863.400239 eV Core-core repulsion = 24908.010121 eV Total energy + Delta-G solvation = -3955.390118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20808 -40.58549 -38.98842 -38.56659 -36.94215 -35.25013 -33.67206 -33.02191 -32.25306 -31.56764 -27.78872 -27.35325 -26.89151 -25.06459 -23.56344 -23.13329 -22.04292 -20.97564 -20.25354 -18.97655 -18.67230 -18.37864 -18.11309 -17.66633 -17.14402 -16.88984 -16.28242 -15.89985 -15.71833 -15.62788 -15.14640 -15.05114 -14.86587 -14.69756 -14.51599 -14.30364 -14.26408 -14.11339 -13.70436 -13.58681 -13.30265 -13.10926 -13.04935 -12.96965 -12.54798 -12.38522 -12.29506 -12.19159 -12.05113 -11.61224 -11.54634 -11.24033 -11.02533 -10.97862 -10.75500 -10.28911 -9.99440 -9.66538 -9.36772 -8.32615 -6.36881 0.27896 0.54236 1.05874 1.25144 1.32762 1.38825 1.48772 2.04624 2.22644 2.29878 2.61698 2.95392 3.03659 3.15008 3.31680 3.51205 3.67322 4.00928 4.12689 4.17974 4.21638 4.37277 4.43226 4.44272 4.53313 4.54922 4.62925 4.66632 4.72033 4.77531 4.79573 4.88135 4.90020 4.99184 5.07477 5.13695 5.24304 5.36016 5.53515 5.64213 5.69501 5.90498 6.22782 6.29536 6.53547 6.72281 6.87100 7.29097 8.83213 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.003656 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.137637 B = 7656.840579 C = 8585.676516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.022 3.978 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.251 1.251 7 C -0.515 4.515 8 H 0.045 0.955 9 C 0.006 3.994 10 H 0.023 0.977 11 C -0.100 4.100 12 C -0.126 4.126 13 C 0.072 3.928 14 N -0.577 5.577 15 C 0.493 3.507 16 O -0.546 6.546 17 C 0.539 3.461 18 O -0.517 6.517 19 N -0.591 5.591 20 C 0.124 3.876 21 C -0.385 4.385 22 H 0.170 0.830 23 C -0.142 4.142 24 C 0.143 3.857 25 H 0.130 0.870 26 C -0.433 4.433 27 S 1.251 4.749 28 O -0.903 6.903 29 C 0.107 3.893 30 H 0.267 0.733 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.141 0.859 43 H 0.060 0.940 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.976 3.422 -2.383 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.177 4.177 3 Si 0.767 3.233 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.175 1.175 7 C -0.553 4.553 8 H 0.064 0.936 9 C -0.013 4.013 10 H 0.041 0.959 11 C -0.138 4.138 12 C -0.164 4.164 13 C -0.048 4.048 14 N -0.309 5.309 15 C 0.275 3.725 16 O -0.424 6.424 17 C 0.322 3.678 18 O -0.394 6.394 19 N -0.326 5.326 20 C 0.001 3.999 21 C -0.503 4.503 22 H 0.187 0.813 23 C -0.180 4.180 24 C 0.041 3.959 25 H 0.148 0.852 26 C -0.572 4.572 27 S 1.452 4.548 28 O -0.899 6.899 29 C -0.014 4.014 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.160 0.840 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.159 0.841 43 H 0.078 0.922 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.006 3.964 -1.488 23.392 hybrid contribution 0.539 0.681 -1.985 2.167 sum 23.545 4.644 -3.474 24.249 Atomic orbital electron populations 1.70014 1.07898 1.28023 1.52179 1.25769 0.95306 1.02343 0.94232 0.86011 0.78885 0.79725 0.78678 1.20187 1.22276 1.17488 1.21282 0.90803 0.93228 1.50029 0.93645 1.19325 0.93828 0.95278 0.92907 0.95890 1.21415 0.95264 0.95671 1.01454 1.21956 0.94951 1.01919 0.97586 1.22970 1.02456 0.80511 0.98860 1.48339 1.06889 1.07843 1.67831 1.20355 0.88147 0.84835 0.79121 1.90721 1.75383 1.25605 1.50709 1.19546 0.86233 0.83896 0.78081 1.90497 1.75579 1.24328 1.49024 1.48944 1.08367 1.07400 1.67868 1.22407 0.94602 0.77807 1.05035 1.29777 1.01710 1.05661 1.13144 0.81270 1.24062 1.01017 0.91783 1.01183 1.23215 0.77810 0.99538 0.95369 0.85212 1.28834 1.07230 1.18126 1.02998 1.71293 0.98253 0.85953 0.99349 1.93021 1.48930 1.67329 1.80577 1.22235 0.77419 1.01002 1.00784 0.92403 0.92601 0.92500 0.88070 0.91925 0.90782 0.83954 0.87522 0.89283 0.87957 0.88933 0.86751 0.84053 0.92178 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 2 C 0.02 1.25 5.45 84.65 0.46 1.71 16 3 Si 0.94 45.89 24.32 68.60 1.67 47.55 16 4 H -0.28 -13.37 6.92 99.48 0.69 -12.68 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.25 -11.74 6.53 99.48 0.65 -11.09 16 7 C -0.51 -28.23 9.14 25.60 0.23 -28.00 16 8 H 0.05 2.72 7.99 -2.91 -0.02 2.70 16 9 C 0.01 0.27 1.83 -11.61 -0.02 0.25 16 10 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 11 C -0.10 -3.56 5.11 30.62 0.16 -3.40 16 12 C -0.13 -3.37 6.08 30.67 0.19 -3.19 16 13 C 0.07 1.97 5.98 86.36 0.52 2.49 16 14 N -0.58 -19.61 2.98 -821.31 -2.45 -22.05 16 15 C 0.49 15.69 7.69 87.27 0.67 16.36 16 16 O -0.55 -19.50 13.65 -3.24 -0.04 -19.54 16 17 C 0.54 13.35 7.78 87.27 0.68 14.03 16 18 O -0.52 -13.35 13.47 -3.25 -0.04 -13.40 16 19 N -0.59 -10.96 2.88 -774.15 -2.23 -13.19 16 20 C 0.12 1.98 4.67 87.28 0.41 2.38 16 21 C -0.38 -4.53 5.75 33.35 0.19 -4.34 16 22 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 23 C -0.14 -1.76 6.26 33.34 0.21 -1.55 16 24 C 0.14 2.02 4.45 46.64 0.21 2.22 16 25 H 0.13 1.79 8.07 -2.39 -0.02 1.77 16 26 C -0.43 -5.25 6.97 72.95 0.51 -4.75 16 27 S 1.25 16.39 13.86 -56.49 -0.78 15.61 16 28 O -0.90 -22.82 18.16 -148.98 -2.71 -25.52 16 29 C 0.11 4.47 5.10 86.22 0.44 4.91 16 30 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.14 3.59 4.32 -47.32 -0.20 3.38 16 37 H 0.11 1.58 7.55 -2.39 -0.02 1.57 16 38 H 0.09 1.62 7.72 -2.38 -0.02 1.60 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.17 8.13 -2.39 -0.02 1.15 16 41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 2.76 2.32 -2.39 -0.01 2.75 16 44 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -76.96 349.11 -0.68 -77.64 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.75 Total: 11.16 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 4.85 Total: -0.87 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.37 Total: -92.64 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -2.79 Total: -58.46 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.55 kcal Atomic # 16 Polarization: 16.39 SS G_CDS: -0.78 Total: 15.61 kcal Total: -76.96 -0.68 -77.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.404 kcal (2) G-P(sol) polarization free energy of solvation -76.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds