Wall clock time and date at job start Sat Apr 11 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47291 * 275.07728 * 3 2 1 5 5 H 1.48503 * 109.46996 * 35.07869 * 3 2 1 6 6 H 1.48502 * 109.47021 * 155.07449 * 3 2 1 7 7 C 1.37879 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00042 * 355.54710 * 7 2 1 9 9 C 1.50706 * 119.99607 * 175.55634 * 7 2 1 10 10 H 1.09000 * 109.49453 * 325.82836 * 9 7 2 11 11 C 1.53037 * 109.49285 * 205.76702 * 9 7 2 12 12 C 1.53038 * 109.53831 * 178.64902 * 11 9 7 13 13 C 1.53192 * 109.31168 * 61.36529 * 12 11 9 14 14 N 1.46932 * 108.77660 * 305.36584 * 13 12 11 15 15 C 1.34770 * 120.63105 * 233.60917 * 14 13 12 16 16 O 1.21352 * 119.99920 * 186.79388 * 15 14 13 17 17 C 1.49449 * 120.00194 * 6.79714 * 15 14 13 18 18 O 1.21355 * 120.00238 * 6.90284 * 17 15 14 19 19 N 1.34781 * 120.00513 * 186.90050 * 17 15 14 20 20 C 1.47553 * 125.71253 * 0.02562 * 19 17 15 21 21 C 1.56187 * 105.82270 * 176.45007 * 20 19 17 22 22 H 1.09005 * 116.99262 * 159.88045 * 21 20 19 23 23 C 1.57649 * 98.57917 * 33.00684 * 21 20 19 24 24 C 1.48620 * 125.72401 * 179.71406 * 19 17 15 25 25 H 1.09009 * 113.89377 * 29.06434 * 24 19 17 26 26 C 1.55794 * 106.49350 * 261.91896 * 24 19 17 27 27 S 1.85018 * 103.87382 * 290.40941 * 21 20 19 28 28 O 1.42108 * 109.46933 * 181.21667 * 27 21 20 29 29 C 1.46924 * 118.73575 * 53.60503 * 14 13 12 30 30 H 0.97005 * 119.99649 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.46114 * 298.67143 * 11 9 7 32 32 H 1.09000 * 109.46371 * 58.64140 * 11 9 7 33 33 H 1.08997 * 109.50118 * 181.31370 * 12 11 9 34 34 H 1.08996 * 109.49739 * 301.41590 * 12 11 9 35 35 H 1.08998 * 109.58900 * 65.15325 * 13 12 11 36 36 H 1.08998 * 109.58741 * 185.58063 * 13 12 11 37 37 H 1.08988 * 110.18469 * 295.54242 * 20 19 17 38 38 H 1.09000 * 110.17765 * 57.36680 * 20 19 17 39 39 H 1.09001 * 111.57890 * 68.76680 * 23 21 20 40 40 H 1.09008 * 111.57491 * 194.02334 * 23 21 20 41 41 H 1.09004 * 110.75517 * 48.35713 * 26 24 19 42 42 H 1.09000 * 110.75874 * 171.53946 * 26 24 19 43 43 H 1.09005 * 109.58786 * 186.60470 * 29 14 13 44 44 H 1.09007 * 109.58779 * 66.18473 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3894 2.1084 -1.3946 5 1 1.5044 2.6193 0.8046 6 1 3.5963 1.4115 0.5901 7 6 2.0045 -1.1941 -0.0005 8 1 1.4670 -2.1279 0.0717 9 6 3.5082 -1.1960 -0.1017 10 1 3.8312 -0.3690 -0.7340 11 6 3.9773 -2.5189 -0.7114 12 6 5.5018 -2.5084 -0.8457 13 6 6.1318 -2.3659 0.5433 14 7 5.5752 -1.1724 1.1950 15 6 6.3881 -0.2186 1.6906 16 8 5.9241 0.6999 2.3338 17 6 7.8609 -0.2919 1.4479 18 8 8.3118 -1.1367 0.7025 19 7 8.6886 0.5803 2.0569 20 6 8.2789 1.6529 2.9837 21 6 9.6032 2.3155 3.4803 22 1 9.5281 3.3204 3.8959 23 6 10.4628 2.1327 2.1715 24 6 10.1672 0.6189 1.9127 25 1 10.5265 0.2559 0.9496 26 6 10.7517 -0.1338 3.1452 27 16 10.3725 1.0194 4.5534 28 8 11.5880 1.5152 5.0975 29 6 4.1155 -1.0386 1.2958 30 1 -0.4850 0.8401 0.0004 31 1 3.6753 -3.3436 -0.0660 32 1 3.5271 -2.6448 -1.6961 33 1 5.8333 -3.4413 -1.3016 34 1 5.8061 -1.6691 -1.4710 35 1 5.9030 -3.2485 1.1406 36 1 7.2120 -2.2585 0.4454 37 1 7.6642 2.3863 2.4620 38 1 7.7299 1.2324 3.8263 39 1 10.0955 2.7605 1.3597 40 1 11.5222 2.3074 2.3600 41 1 10.2481 -1.0898 3.2884 42 1 11.8266 -0.2777 3.0359 43 1 3.8654 -0.0554 1.6944 44 1 3.7222 -1.8130 1.9545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329740901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:52 Heat of formation + Delta-G solvation = -57.199046 kcal Electronic energy + Delta-G solvation = -28692.503380 eV Core-core repulsion = 24738.147467 eV Total energy + Delta-G solvation = -3954.355913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10181 -39.41997 -37.91252 -37.07398 -36.11579 -33.38792 -32.23842 -31.84972 -30.87807 -30.49038 -26.69055 -26.29233 -25.19774 -23.83930 -22.30049 -21.88979 -21.04144 -19.74733 -18.88968 -17.93190 -17.46639 -17.07826 -16.83748 -16.51572 -16.01156 -15.76127 -14.98466 -14.71536 -14.41733 -14.11398 -14.01065 -13.92967 -13.67931 -13.60699 -13.45635 -13.20766 -12.87627 -12.62261 -12.55706 -12.42570 -12.41073 -12.17789 -11.90918 -11.62705 -11.54900 -11.17403 -10.76373 -10.53275 -10.44301 -10.24914 -10.06162 -9.77021 -9.51832 -9.26179 -9.22788 -8.76658 -8.72064 -8.65285 -8.16551 -6.15749 -4.16769 1.17490 1.46235 1.80273 2.13545 3.25158 3.27311 3.29693 3.37535 3.41492 3.45458 3.73507 3.95877 4.19021 4.30575 4.36513 4.38028 4.79083 5.04464 5.06231 5.16040 5.17781 5.26638 5.38120 5.41364 5.47232 5.49966 5.53385 5.68680 5.76730 5.96973 6.17154 6.17662 6.28253 6.46154 6.52047 6.61134 6.74607 6.80893 6.93258 7.20470 7.32335 7.54832 7.68651 7.75055 8.19353 8.44561 8.89805 9.47014 10.96547 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.003359 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.558844 B = 8332.936330 C = 9201.889552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.865 3.135 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.009 3.991 10 H 0.031 0.969 11 C -0.105 4.105 12 C -0.131 4.131 13 C 0.051 3.949 14 N -0.567 5.567 15 C 0.497 3.503 16 O -0.526 6.526 17 C 0.530 3.470 18 O -0.507 6.507 19 N -0.601 5.601 20 C 0.132 3.868 21 C -0.397 4.397 22 H 0.151 0.849 23 C -0.140 4.140 24 C 0.145 3.855 25 H 0.125 0.875 26 C -0.423 4.423 27 S 1.205 4.795 28 O -0.846 6.846 29 C 0.103 3.897 30 H 0.265 0.735 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.403 0.176 6.888 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.691 3.309 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.011 4.011 10 H 0.049 0.951 11 C -0.143 4.143 12 C -0.169 4.169 13 C -0.071 4.071 14 N -0.299 5.299 15 C 0.278 3.722 16 O -0.404 6.404 17 C 0.315 3.685 18 O -0.384 6.384 19 N -0.336 5.336 20 C 0.008 3.992 21 C -0.515 4.515 22 H 0.169 0.831 23 C -0.178 4.178 24 C 0.042 3.958 25 H 0.143 0.857 26 C -0.561 4.561 27 S 1.403 4.597 28 O -0.841 6.841 29 C -0.017 4.017 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.321 0.190 7.906 21.805 hybrid contribution 1.476 1.744 -1.706 2.851 sum 21.797 1.933 6.201 22.744 Atomic orbital electron populations 1.69905 1.06378 1.27153 1.49686 1.25067 0.94683 0.99094 0.93920 0.87084 0.81570 0.83796 0.78402 1.20649 1.21253 1.17234 1.20914 0.88295 0.94682 1.51333 0.90580 1.19432 0.96384 0.94222 0.91045 0.95067 1.21552 0.92539 0.99140 1.01070 1.21910 0.97638 1.01252 0.96131 1.23128 1.04093 0.86284 0.93546 1.48452 1.08224 1.19450 1.53764 1.19714 0.86474 0.84031 0.81973 1.90727 1.76254 1.34047 1.39352 1.20475 0.87831 0.80397 0.79811 1.90342 1.76958 1.34554 1.36497 1.48999 1.06688 1.32218 1.45732 1.22293 0.93583 0.89616 0.93669 1.29815 1.02344 1.12006 1.07342 0.83118 1.24041 1.00341 0.95574 0.97893 1.23085 0.79326 0.94191 0.99214 0.85739 1.28999 1.06962 1.10697 1.09489 1.71952 1.02225 0.93938 0.91579 1.93121 1.46442 1.77623 1.66893 1.22877 0.74111 1.03097 1.01654 0.92515 0.92721 0.92242 0.91751 0.92345 0.92093 0.83906 0.88651 0.88334 0.88564 0.89324 0.85483 0.87402 0.89387 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 21.12 26.29 -169.99 -4.47 16.65 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.25 -5.91 5.35 56.52 0.30 -5.61 16 7 C -0.51 -13.69 8.88 -34.44 -0.31 -14.00 16 8 H 0.08 2.19 8.05 -52.49 -0.42 1.77 16 9 C 0.01 0.20 1.79 -91.65 -0.16 0.03 16 10 H 0.03 0.73 6.18 -51.93 -0.32 0.41 16 11 C -0.11 -1.98 5.15 -26.69 -0.14 -2.11 16 12 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 13 C 0.05 0.77 6.27 -3.71 -0.02 0.74 16 14 N -0.57 -9.98 2.97 -173.28 -0.51 -10.49 16 15 C 0.50 8.25 7.70 -11.59 -0.09 8.16 16 16 O -0.53 -9.51 13.67 5.49 0.08 -9.43 16 17 C 0.53 7.25 7.81 -11.58 -0.09 7.16 16 18 O -0.51 -7.38 13.38 5.49 0.07 -7.31 16 19 N -0.60 -6.32 2.88 -158.49 -0.46 -6.77 16 20 C 0.13 1.17 4.67 -1.76 -0.01 1.16 16 21 C -0.40 -2.79 5.69 -22.48 -0.13 -2.92 16 22 H 0.15 0.88 8.14 -51.93 -0.42 0.45 16 23 C -0.14 -1.07 6.30 -22.37 -0.14 -1.21 16 24 C 0.15 1.23 4.46 -63.44 -0.28 0.95 16 25 H 0.12 1.07 8.05 -51.92 -0.42 0.66 16 26 C -0.42 -3.03 7.05 38.65 0.27 -2.76 16 27 S 1.20 8.62 14.02 -107.50 -1.51 7.11 16 28 O -0.85 -11.02 18.16 -35.23 -0.64 -11.66 16 29 C 0.10 2.11 5.33 -3.72 -0.02 2.09 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.14 2.10 3.78 -56.74 -0.21 1.88 16 37 H 0.10 0.98 7.72 -51.94 -0.40 0.58 16 38 H 0.10 0.77 7.53 -51.93 -0.39 0.38 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.99 4.68 -51.93 -0.24 1.74 16 44 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -35.10 351.40 -9.04 -44.14 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.30 Total: 1.18 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.38 Total: -2.92 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.20 Total: -43.06 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.49 Total: -28.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.47 Total: 16.65 kcal Atomic # 16 Polarization: 8.62 SS G_CDS: -1.51 Total: 7.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.10 -9.04 -44.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.057 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds