Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47291 * 275.07728 * 3 2 1 5 5 H 1.48503 * 109.46996 * 35.07869 * 3 2 1 6 6 H 1.48502 * 109.47021 * 155.07449 * 3 2 1 7 7 C 1.37879 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00042 * 355.54710 * 7 2 1 9 9 C 1.50706 * 119.99607 * 175.55634 * 7 2 1 10 10 H 1.09000 * 109.49453 * 325.82836 * 9 7 2 11 11 C 1.53037 * 109.49285 * 205.76702 * 9 7 2 12 12 C 1.53038 * 109.53831 * 178.64902 * 11 9 7 13 13 C 1.53192 * 109.31168 * 61.36529 * 12 11 9 14 14 N 1.46932 * 108.77660 * 305.36584 * 13 12 11 15 15 C 1.34770 * 120.63105 * 233.60917 * 14 13 12 16 16 O 1.21352 * 119.99920 * 186.79388 * 15 14 13 17 17 C 1.49449 * 120.00194 * 6.79714 * 15 14 13 18 18 O 1.21355 * 120.00238 * 6.90284 * 17 15 14 19 19 N 1.34781 * 120.00513 * 186.90050 * 17 15 14 20 20 C 1.47553 * 125.71253 * 0.02562 * 19 17 15 21 21 C 1.56187 * 105.82270 * 176.45007 * 20 19 17 22 22 H 1.09005 * 116.99262 * 159.88045 * 21 20 19 23 23 C 1.57649 * 98.57917 * 33.00684 * 21 20 19 24 24 C 1.48620 * 125.72401 * 179.71406 * 19 17 15 25 25 H 1.09009 * 113.89377 * 29.06434 * 24 19 17 26 26 C 1.55794 * 106.49350 * 261.91896 * 24 19 17 27 27 S 1.85018 * 103.87382 * 290.40941 * 21 20 19 28 28 O 1.42108 * 109.46933 * 181.21667 * 27 21 20 29 29 C 1.46924 * 118.73575 * 53.60503 * 14 13 12 30 30 H 0.97005 * 119.99649 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.46114 * 298.67143 * 11 9 7 32 32 H 1.09000 * 109.46371 * 58.64140 * 11 9 7 33 33 H 1.08997 * 109.50118 * 181.31370 * 12 11 9 34 34 H 1.08996 * 109.49739 * 301.41590 * 12 11 9 35 35 H 1.08998 * 109.58900 * 65.15325 * 13 12 11 36 36 H 1.08998 * 109.58741 * 185.58063 * 13 12 11 37 37 H 1.08988 * 110.18469 * 295.54242 * 20 19 17 38 38 H 1.09000 * 110.17765 * 57.36680 * 20 19 17 39 39 H 1.09001 * 111.57890 * 68.76680 * 23 21 20 40 40 H 1.09008 * 111.57491 * 194.02334 * 23 21 20 41 41 H 1.09004 * 110.75517 * 48.35713 * 26 24 19 42 42 H 1.09000 * 110.75874 * 171.53946 * 26 24 19 43 43 H 1.09005 * 109.58786 * 186.60470 * 29 14 13 44 44 H 1.09007 * 109.58779 * 66.18473 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3894 2.1084 -1.3946 5 1 1.5044 2.6193 0.8046 6 1 3.5963 1.4115 0.5901 7 6 2.0045 -1.1941 -0.0005 8 1 1.4670 -2.1279 0.0717 9 6 3.5082 -1.1960 -0.1017 10 1 3.8312 -0.3690 -0.7340 11 6 3.9773 -2.5189 -0.7114 12 6 5.5018 -2.5084 -0.8457 13 6 6.1318 -2.3659 0.5433 14 7 5.5752 -1.1724 1.1950 15 6 6.3881 -0.2186 1.6906 16 8 5.9241 0.6999 2.3338 17 6 7.8609 -0.2919 1.4479 18 8 8.3118 -1.1367 0.7025 19 7 8.6886 0.5803 2.0569 20 6 8.2789 1.6529 2.9837 21 6 9.6032 2.3155 3.4803 22 1 9.5281 3.3204 3.8959 23 6 10.4628 2.1327 2.1715 24 6 10.1672 0.6189 1.9127 25 1 10.5265 0.2559 0.9496 26 6 10.7517 -0.1338 3.1452 27 16 10.3725 1.0194 4.5534 28 8 11.5880 1.5152 5.0975 29 6 4.1155 -1.0386 1.2958 30 1 -0.4850 0.8401 0.0004 31 1 3.6753 -3.3436 -0.0660 32 1 3.5271 -2.6448 -1.6961 33 1 5.8333 -3.4413 -1.3016 34 1 5.8061 -1.6691 -1.4710 35 1 5.9030 -3.2485 1.1406 36 1 7.2120 -2.2585 0.4454 37 1 7.6642 2.3863 2.4620 38 1 7.7299 1.2324 3.8263 39 1 10.0955 2.7605 1.3597 40 1 11.5222 2.3074 2.3600 41 1 10.2481 -1.0898 3.2884 42 1 11.8266 -0.2777 3.0359 43 1 3.8654 -0.0554 1.6944 44 1 3.7222 -1.8130 1.9545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329740901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -83.164898 kcal Electronic energy + Delta-G solvation = -28693.629344 eV Core-core repulsion = 24738.147467 eV Total energy + Delta-G solvation = -3955.481877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17466 -40.50295 -38.97460 -38.48834 -36.94179 -35.19809 -33.61627 -32.98041 -32.16539 -31.50905 -27.76137 -27.31601 -26.85981 -24.99159 -23.46146 -23.10543 -22.02516 -20.89394 -20.23844 -19.07982 -18.65301 -18.33032 -17.96724 -17.61375 -17.14587 -16.74366 -16.36227 -15.83101 -15.66686 -15.54637 -15.12574 -15.05346 -14.82046 -14.70506 -14.47059 -14.37746 -14.24686 -13.94872 -13.69753 -13.54225 -13.25846 -13.06210 -13.03533 -13.01838 -12.50353 -12.38604 -12.31861 -12.15145 -12.05010 -11.56994 -11.51656 -11.22071 -11.10878 -10.94265 -10.74448 -10.15507 -9.94558 -9.60823 -9.40473 -8.32237 -6.35495 0.31022 0.56910 1.10289 1.20641 1.29996 1.37165 1.48162 2.09828 2.28828 2.32273 2.61859 2.97926 3.06023 3.17183 3.33226 3.55089 3.69723 4.08208 4.16468 4.19616 4.28813 4.39760 4.44573 4.50972 4.55885 4.60966 4.67104 4.71807 4.75813 4.79633 4.87378 4.90525 4.92367 5.00295 5.12738 5.16811 5.27494 5.39300 5.58780 5.64473 5.69228 5.93690 6.29934 6.33113 6.59589 6.73924 6.92493 7.31180 8.83981 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.003359 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.558844 B = 8332.936330 C = 9201.889552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.022 3.978 3 Si 0.926 3.074 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.511 4.511 8 H 0.043 0.957 9 C 0.008 3.992 10 H 0.020 0.980 11 C -0.102 4.102 12 C -0.123 4.123 13 C 0.052 3.948 14 N -0.576 5.576 15 C 0.493 3.507 16 O -0.544 6.544 17 C 0.537 3.463 18 O -0.516 6.516 19 N -0.591 5.591 20 C 0.124 3.876 21 C -0.384 4.384 22 H 0.168 0.832 23 C -0.140 4.140 24 C 0.142 3.858 25 H 0.128 0.872 26 C -0.418 4.418 27 S 1.247 4.753 28 O -0.903 6.903 29 C 0.115 3.885 30 H 0.266 0.734 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.236 0.200 7.122 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.176 4.176 3 Si 0.751 3.249 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.549 4.549 8 H 0.061 0.939 9 C -0.012 4.012 10 H 0.038 0.962 11 C -0.140 4.140 12 C -0.161 4.161 13 C -0.068 4.068 14 N -0.307 5.307 15 C 0.275 3.725 16 O -0.422 6.422 17 C 0.321 3.679 18 O -0.394 6.394 19 N -0.325 5.325 20 C 0.002 3.998 21 C -0.503 4.503 22 H 0.185 0.815 23 C -0.179 4.179 24 C 0.039 3.961 25 H 0.145 0.855 26 C -0.557 4.557 27 S 1.447 4.553 28 O -0.898 6.898 29 C -0.007 4.007 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.159 0.841 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.211 0.218 8.161 24.605 hybrid contribution 0.581 1.688 -1.804 2.538 sum 23.792 1.905 6.357 24.700 Atomic orbital electron populations 1.70032 1.08012 1.27982 1.52173 1.25796 0.95259 1.02432 0.94121 0.86109 0.80579 0.79862 0.78336 1.20351 1.21301 1.16348 1.21194 0.90852 0.93178 1.49689 0.93908 1.19374 0.93566 0.95861 0.92373 0.96200 1.21474 0.95177 0.97080 1.00285 1.21861 0.94745 1.02697 0.96804 1.23324 1.04539 0.85876 0.93079 1.48394 1.06954 1.20740 1.54645 1.20235 0.87920 0.83170 0.81167 1.90714 1.77088 1.34529 1.39912 1.19714 0.86532 0.81221 0.80416 1.90320 1.76548 1.35307 1.37214 1.48991 1.07423 1.31367 1.44764 1.22433 0.94533 0.89177 0.93681 1.29790 1.00891 1.12725 1.06876 0.81474 1.24074 1.00634 0.94976 0.98214 1.23292 0.77669 0.95067 1.00037 0.85457 1.28961 1.07428 1.11004 1.08298 1.71468 0.99991 0.92990 0.90860 1.93024 1.48789 1.78936 1.69063 1.22301 0.76587 1.01924 0.99889 0.92481 0.92375 0.93082 0.88516 0.93055 0.90473 0.82654 0.89658 0.87022 0.88261 0.88971 0.84145 0.86907 0.91521 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 2 C 0.02 1.26 5.47 84.65 0.46 1.73 16 3 Si 0.93 44.45 26.29 68.60 1.80 46.25 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.24 -11.08 5.35 99.48 0.53 -10.55 16 7 C -0.51 -27.87 8.88 25.60 0.23 -27.64 16 8 H 0.04 2.56 8.05 -2.92 -0.02 2.54 16 9 C 0.01 0.35 1.79 -11.46 -0.02 0.33 16 10 H 0.02 0.92 6.18 -2.39 -0.01 0.91 16 11 C -0.10 -3.74 5.15 30.62 0.16 -3.58 16 12 C -0.12 -3.53 6.08 30.67 0.19 -3.34 16 13 C 0.05 1.42 6.27 86.36 0.54 1.96 16 14 N -0.58 -19.17 2.97 -820.48 -2.44 -21.61 16 15 C 0.49 15.37 7.70 87.27 0.67 16.04 16 16 O -0.54 -18.78 13.67 -3.25 -0.04 -18.82 16 17 C 0.54 13.24 7.81 87.27 0.68 13.93 16 18 O -0.52 -13.40 13.38 -3.26 -0.04 -13.44 16 19 N -0.59 -10.79 2.88 -773.70 -2.23 -13.02 16 20 C 0.12 1.90 4.67 87.28 0.41 2.30 16 21 C -0.38 -4.36 5.69 33.35 0.19 -4.17 16 22 H 0.17 1.44 8.14 -2.38 -0.02 1.42 16 23 C -0.14 -1.76 6.30 33.42 0.21 -1.55 16 24 C 0.14 1.98 4.46 46.73 0.21 2.19 16 25 H 0.13 1.81 8.05 -2.38 -0.02 1.79 16 26 C -0.42 -4.74 7.05 72.95 0.51 -4.22 16 27 S 1.25 14.94 14.02 -56.49 -0.79 14.14 16 28 O -0.90 -22.10 18.16 -148.98 -2.71 -24.81 16 29 C 0.11 4.63 5.33 86.36 0.46 5.09 16 30 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.16 4.02 3.78 -78.63 -0.30 3.72 16 37 H 0.09 1.57 7.72 -2.39 -0.02 1.55 16 38 H 0.11 1.45 7.53 -2.39 -0.02 1.43 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 2.98 4.68 -2.38 -0.01 2.96 16 44 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -76.85 351.40 -0.69 -77.54 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.56 Total: 12.11 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 4.90 Total: -0.94 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.37 Total: -92.04 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -2.79 Total: -57.08 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.80 Total: 46.25 kcal Atomic # 16 Polarization: 14.94 SS G_CDS: -0.79 Total: 14.14 kcal Total: -76.85 -0.69 -77.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.622 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds