Wall clock time and date at job start Sat Apr 11 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48499 * 109.47282 * 240.00108 * 3 2 1 5 5 H 1.48503 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46952 * 120.00451 * 3 2 1 7 7 C 1.37881 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00055 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52274 * 60.08230 * 9 7 2 11 11 C 1.53039 * 109.49463 * 180.16602 * 9 7 2 12 12 C 1.53042 * 109.53437 * 181.31915 * 11 9 7 13 13 C 1.53200 * 109.31268 * 298.63122 * 12 11 9 14 14 N 1.47208 * 108.84968 * 54.65449 * 13 12 11 15 15 C 1.34776 * 120.81147 * 126.34099 * 14 13 12 16 16 O 1.21350 * 119.99758 * 172.68039 * 15 14 13 17 17 C 1.49454 * 120.00284 * 352.68476 * 15 14 13 18 18 O 1.21346 * 119.99732 * 353.94403 * 17 15 14 19 19 N 1.34772 * 120.00049 * 173.94727 * 17 15 14 20 20 C 1.47551 * 125.72043 * 359.69101 * 19 17 15 21 21 C 1.56225 * 105.80974 * 176.35548 * 20 19 17 22 22 H 1.08996 * 116.91317 * 160.08590 * 21 20 19 23 23 C 1.57654 * 98.45459 * 33.35547 * 21 20 19 24 24 C 1.48631 * 125.71781 * 179.97438 * 19 17 15 25 25 H 1.09000 * 113.89034 * 29.02834 * 24 19 17 26 26 C 1.55788 * 106.49031 * 262.85400 * 24 19 17 27 27 S 1.85017 * 104.09288 * 291.74783 * 21 20 19 28 28 O 1.42105 * 109.46922 * 315.37810 * 27 21 20 29 29 C 1.46928 * 118.55673 * 306.47416 * 14 13 12 30 30 H 0.97001 * 120.00390 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46365 * 301.33283 * 11 9 7 32 32 H 1.09000 * 109.46262 * 61.29997 * 11 9 7 33 33 H 1.08996 * 109.50242 * 58.58429 * 12 11 9 34 34 H 1.09005 * 109.49896 * 178.65459 * 12 11 9 35 35 H 1.09003 * 109.58647 * 174.41980 * 13 12 11 36 36 H 1.08994 * 109.58723 * 294.71013 * 13 12 11 37 37 H 1.09004 * 110.18199 * 295.57533 * 20 19 17 38 38 H 1.09001 * 110.18047 * 57.39644 * 20 19 17 39 39 H 1.09004 * 111.57626 * 193.88559 * 23 21 20 40 40 H 1.09002 * 111.62104 * 68.58546 * 23 21 20 41 41 H 1.09006 * 110.75489 * 48.35867 * 26 24 19 42 42 H 1.09000 * 110.75860 * 171.72694 * 26 24 19 43 43 H 1.08998 * 109.58367 * 293.68420 * 29 14 13 44 44 H 1.09001 * 109.58315 * 173.40216 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5583 -0.8908 11 6 2.2450 -3.6628 0.0030 12 6 1.4811 -4.9885 -0.0302 13 6 0.6031 -5.0988 1.2204 14 7 -0.2583 -3.9080 1.3033 15 6 -1.5953 -4.0301 1.4224 16 8 -2.2788 -3.0476 1.6228 17 6 -2.2360 -5.3755 1.3078 18 8 -1.5689 -6.3409 0.9991 19 7 -3.5548 -5.5164 1.5474 20 6 -4.4802 -4.4347 1.9357 21 6 -5.8971 -5.0895 2.0001 22 1 -6.6572 -4.5649 2.5789 23 6 -5.4676 -6.5233 2.4953 24 6 -4.3196 -6.7885 1.4704 25 1 -3.7251 -7.6750 1.6912 26 6 -4.9899 -6.8171 0.0644 27 16 -6.2865 -5.4951 0.2374 28 8 -5.9410 -4.3925 -0.5898 29 6 0.3705 -2.5812 1.2504 30 1 -0.4851 0.8400 0.0004 31 1 2.8891 -3.5929 -0.8735 32 1 2.8543 -3.6173 0.9057 33 1 0.8527 -5.0242 -0.9201 34 1 2.1898 -5.8164 -0.0518 35 1 -0.0166 -5.9931 1.1541 36 1 1.2351 -5.1570 2.1065 37 1 -4.2035 -4.0354 2.9115 38 1 -4.4678 -3.6424 1.1872 39 1 -6.2774 -7.2447 2.3853 40 1 -5.0938 -6.4994 3.5189 41 1 -4.2661 -6.5745 -0.7136 42 1 -5.4510 -7.7866 -0.1241 43 1 0.9834 -2.4316 2.1392 44 1 -0.4012 -1.8127 1.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329740902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:54 Heat of formation + Delta-G solvation = -58.195291 kcal Electronic energy + Delta-G solvation = -28899.128164 eV Core-core repulsion = 24944.729050 eV Total energy + Delta-G solvation = -3954.399114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84233 -39.12716 -37.65252 -36.76355 -35.91846 -33.31130 -32.04840 -31.63123 -30.71800 -29.72370 -26.48602 -26.03712 -25.00626 -23.59577 -22.16650 -21.71130 -20.87214 -19.60347 -18.66401 -17.77224 -17.17324 -16.93813 -16.45576 -15.94620 -15.73909 -15.52489 -14.76838 -14.57025 -14.53905 -13.97026 -13.78512 -13.59110 -13.46491 -13.28653 -13.00623 -12.84116 -12.72753 -12.57708 -12.33970 -12.07442 -12.03097 -11.89397 -11.73789 -11.50124 -11.29584 -10.95108 -10.68680 -10.46487 -10.24875 -10.04707 -10.00314 -9.84389 -9.21828 -9.11458 -9.06221 -8.53749 -8.50799 -8.40196 -7.81666 -5.99934 -4.08908 1.36815 1.73583 2.02376 2.39444 3.32450 3.38064 3.39694 3.41464 3.59494 3.69581 4.00045 4.10079 4.34451 4.42825 4.51710 4.62369 4.97265 5.16287 5.22021 5.30083 5.33718 5.40348 5.58392 5.60878 5.67860 5.69555 5.73660 5.92720 6.01923 6.21417 6.38451 6.45701 6.61140 6.71464 6.87366 6.99970 7.04523 7.14568 7.19148 7.59193 7.79603 7.89448 7.96632 8.15922 8.36110 8.58143 8.95016 9.56628 11.05614 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.003441 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.759414 B = 8134.549246 C = 9139.383785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.052 3.948 14 N -0.568 5.568 15 C 0.496 3.504 16 O -0.517 6.517 17 C 0.530 3.470 18 O -0.512 6.512 19 N -0.605 5.605 20 C 0.107 3.893 21 C -0.403 4.403 22 H 0.159 0.841 23 C -0.119 4.119 24 C 0.133 3.867 25 H 0.122 0.878 26 C -0.427 4.427 27 S 1.206 4.794 28 O -0.827 6.827 29 C 0.109 3.891 30 H 0.265 0.735 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.140 0.860 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.048 0.952 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.223 -18.688 6.214 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.166 4.166 13 C -0.069 4.069 14 N -0.300 5.300 15 C 0.276 3.724 16 O -0.394 6.394 17 C 0.315 3.685 18 O -0.389 6.389 19 N -0.341 5.341 20 C -0.015 4.015 21 C -0.520 4.520 22 H 0.177 0.823 23 C -0.158 4.158 24 C 0.030 3.970 25 H 0.140 0.860 26 C -0.566 4.566 27 S 1.403 4.597 28 O -0.822 6.822 29 C -0.010 4.010 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.066 0.934 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.996 -18.067 5.417 25.389 hybrid contribution 2.773 1.684 0.336 3.261 sum -14.223 -16.383 5.753 22.445 Atomic orbital electron populations 1.69867 1.05818 1.27052 1.49248 1.25073 0.94891 0.99346 0.94755 0.86613 0.79537 0.82995 0.78605 1.20224 1.21227 1.20210 1.21050 0.92929 0.90012 1.51924 0.92255 1.18971 0.92661 0.92563 0.93657 0.95338 1.21660 0.98517 0.94332 1.00502 1.21859 0.98384 0.98600 0.97739 1.23057 0.95124 0.90858 0.97888 1.48488 1.04116 1.10262 1.67134 1.19638 0.83917 0.88142 0.80668 1.90751 1.61964 1.38672 1.47986 1.20647 0.80856 0.90328 0.76650 1.90311 1.59460 1.41622 1.47552 1.49032 1.07465 1.10256 1.67316 1.22594 0.85603 0.89592 1.03744 1.29903 1.02442 1.01085 1.18580 0.82324 1.23646 0.97505 0.94377 1.00301 1.23190 0.92187 0.88780 0.92838 0.86021 1.29015 1.12602 1.13783 1.01166 1.71338 1.09563 0.93292 0.85556 1.93243 1.81611 1.48979 1.58397 1.22491 0.98759 0.80677 0.99119 0.92530 0.93039 0.93209 0.92413 0.92214 0.84360 0.92618 0.89689 0.88349 0.87694 0.88728 0.87811 0.85152 0.93376 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 11.39 55.43 0.63 -25.90 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.62 8.56 -34.44 -0.29 -14.92 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.04 1.06 2.25 -91.65 -0.21 0.86 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.44 5.11 -26.69 -0.14 -2.57 16 12 C -0.13 -2.43 6.08 -26.61 -0.16 -2.59 16 13 C 0.05 1.00 6.28 -3.55 -0.02 0.98 16 14 N -0.57 -12.76 2.98 -173.04 -0.52 -13.28 16 15 C 0.50 11.01 7.70 -11.58 -0.09 10.92 16 16 O -0.52 -12.72 13.65 5.50 0.08 -12.64 16 17 C 0.53 9.84 7.82 -11.59 -0.09 9.75 16 18 O -0.51 -9.52 13.38 5.50 0.07 -9.44 16 19 N -0.61 -8.96 2.87 -158.60 -0.46 -9.42 16 20 C 0.11 1.52 4.67 -1.74 -0.01 1.51 16 21 C -0.40 -3.13 5.76 -22.46 -0.13 -3.26 16 22 H 0.16 0.79 8.14 -51.93 -0.42 0.36 16 23 C -0.12 -0.66 6.27 -22.49 -0.14 -0.80 16 24 C 0.13 1.27 4.39 -63.57 -0.28 0.99 16 25 H 0.12 1.10 8.05 -51.93 -0.42 0.68 16 26 C -0.43 -3.63 7.16 38.64 0.28 -3.35 16 27 S 1.21 9.80 14.24 -107.50 -1.53 8.26 16 28 O -0.83 -13.77 17.14 -35.23 -0.60 -14.38 16 29 C 0.11 2.80 5.37 -3.71 -0.02 2.78 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.14 2.58 3.81 -56.60 -0.22 2.36 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 38 H 0.10 1.82 6.46 -51.93 -0.34 1.49 16 39 H 0.10 0.13 8.13 -51.93 -0.42 -0.29 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.12 3.59 5.17 -51.93 -0.27 3.32 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -39.38 354.42 -9.67 -49.05 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.27 Total: 3.64 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.40 Total: 1.96 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.34 Total: -48.59 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.46 Total: -36.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 9.80 SS G_CDS: -1.53 Total: 8.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.38 -9.67 -49.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.144 kcal (2) G-P(sol) polarization free energy of solvation -39.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds