Wall clock time and date at job start Sat Apr 11 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48499 * 109.47282 * 240.00108 * 3 2 1 5 5 H 1.48503 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46952 * 120.00451 * 3 2 1 7 7 C 1.37881 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00055 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52274 * 60.08230 * 9 7 2 11 11 C 1.53039 * 109.49463 * 180.16602 * 9 7 2 12 12 C 1.53042 * 109.53437 * 181.31915 * 11 9 7 13 13 C 1.53200 * 109.31268 * 298.63122 * 12 11 9 14 14 N 1.47208 * 108.84968 * 54.65449 * 13 12 11 15 15 C 1.34776 * 120.81147 * 126.34099 * 14 13 12 16 16 O 1.21350 * 119.99758 * 172.68039 * 15 14 13 17 17 C 1.49454 * 120.00284 * 352.68476 * 15 14 13 18 18 O 1.21346 * 119.99732 * 353.94403 * 17 15 14 19 19 N 1.34772 * 120.00049 * 173.94727 * 17 15 14 20 20 C 1.47551 * 125.72043 * 359.69101 * 19 17 15 21 21 C 1.56225 * 105.80974 * 176.35548 * 20 19 17 22 22 H 1.08996 * 116.91317 * 160.08590 * 21 20 19 23 23 C 1.57654 * 98.45459 * 33.35547 * 21 20 19 24 24 C 1.48631 * 125.71781 * 179.97438 * 19 17 15 25 25 H 1.09000 * 113.89034 * 29.02834 * 24 19 17 26 26 C 1.55788 * 106.49031 * 262.85400 * 24 19 17 27 27 S 1.85017 * 104.09288 * 291.74783 * 21 20 19 28 28 O 1.42105 * 109.46922 * 315.37810 * 27 21 20 29 29 C 1.46928 * 118.55673 * 306.47416 * 14 13 12 30 30 H 0.97001 * 120.00390 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46365 * 301.33283 * 11 9 7 32 32 H 1.09000 * 109.46262 * 61.29997 * 11 9 7 33 33 H 1.08996 * 109.50242 * 58.58429 * 12 11 9 34 34 H 1.09005 * 109.49896 * 178.65459 * 12 11 9 35 35 H 1.09003 * 109.58647 * 174.41980 * 13 12 11 36 36 H 1.08994 * 109.58723 * 294.71013 * 13 12 11 37 37 H 1.09004 * 110.18199 * 295.57533 * 20 19 17 38 38 H 1.09001 * 110.18047 * 57.39644 * 20 19 17 39 39 H 1.09004 * 111.57626 * 193.88559 * 23 21 20 40 40 H 1.09002 * 111.62104 * 68.58546 * 23 21 20 41 41 H 1.09006 * 110.75489 * 48.35867 * 26 24 19 42 42 H 1.09000 * 110.75860 * 171.72694 * 26 24 19 43 43 H 1.08998 * 109.58367 * 293.68420 * 29 14 13 44 44 H 1.09001 * 109.58315 * 173.40216 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5583 -0.8908 11 6 2.2450 -3.6628 0.0030 12 6 1.4811 -4.9885 -0.0302 13 6 0.6031 -5.0988 1.2204 14 7 -0.2583 -3.9080 1.3033 15 6 -1.5953 -4.0301 1.4224 16 8 -2.2788 -3.0476 1.6228 17 6 -2.2360 -5.3755 1.3078 18 8 -1.5689 -6.3409 0.9991 19 7 -3.5548 -5.5164 1.5474 20 6 -4.4802 -4.4347 1.9357 21 6 -5.8971 -5.0895 2.0001 22 1 -6.6572 -4.5649 2.5789 23 6 -5.4676 -6.5233 2.4953 24 6 -4.3196 -6.7885 1.4704 25 1 -3.7251 -7.6750 1.6912 26 6 -4.9899 -6.8171 0.0644 27 16 -6.2865 -5.4951 0.2374 28 8 -5.9410 -4.3925 -0.5898 29 6 0.3705 -2.5812 1.2504 30 1 -0.4851 0.8400 0.0004 31 1 2.8891 -3.5929 -0.8735 32 1 2.8543 -3.6173 0.9057 33 1 0.8527 -5.0242 -0.9201 34 1 2.1898 -5.8164 -0.0518 35 1 -0.0166 -5.9931 1.1541 36 1 1.2351 -5.1570 2.1065 37 1 -4.2035 -4.0354 2.9115 38 1 -4.4678 -3.6424 1.1872 39 1 -6.2774 -7.2447 2.3853 40 1 -5.0938 -6.4994 3.5189 41 1 -4.2661 -6.5745 -0.7136 42 1 -5.4510 -7.7866 -0.1241 43 1 0.9834 -2.4316 2.1392 44 1 -0.4012 -1.8127 1.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329740902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:54 Heat of formation + Delta-G solvation = -89.786755 kcal Electronic energy + Delta-G solvation = -28900.498072 eV Core-core repulsion = 24944.729050 eV Total energy + Delta-G solvation = -3955.769023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25951 -40.51244 -39.07895 -38.54721 -36.99148 -35.34752 -33.64882 -32.98475 -31.74115 -31.50900 -27.87286 -27.25526 -26.91416 -25.05965 -23.69851 -23.11016 -22.02937 -20.99637 -20.29914 -19.01596 -18.52722 -18.28028 -17.94262 -17.44676 -17.36230 -16.81763 -16.58387 -15.95929 -15.70700 -15.60106 -15.25789 -15.07187 -14.72574 -14.55950 -14.45940 -14.18823 -14.05837 -13.97327 -13.86415 -13.57082 -13.20719 -13.02558 -12.91003 -12.64002 -12.59851 -12.55006 -12.39024 -12.32226 -12.17225 -11.82412 -11.62491 -11.26013 -11.08220 -10.90140 -10.63981 -10.31090 -10.08429 -9.67574 -9.37829 -8.19900 -6.38536 0.15339 0.67697 1.06637 1.32976 1.35721 1.38647 1.46933 1.95040 2.19817 2.36017 2.63332 2.95410 3.09218 3.23574 3.39607 3.61827 3.84085 4.02316 4.07082 4.17273 4.25001 4.30219 4.44425 4.48039 4.61426 4.66965 4.69820 4.74463 4.78611 4.87477 4.94264 4.95805 5.02900 5.08786 5.12422 5.14723 5.20625 5.37007 5.47062 5.72467 5.77299 5.83973 6.15153 6.25162 6.48135 6.72788 6.83507 7.32379 8.84140 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.003441 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.759414 B = 8134.549246 C = 9139.383785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.038 3.962 10 H -0.020 1.020 11 C -0.105 4.105 12 C -0.121 4.121 13 C 0.051 3.949 14 N -0.576 5.576 15 C 0.478 3.522 16 O -0.555 6.555 17 C 0.529 3.471 18 O -0.515 6.515 19 N -0.600 5.600 20 C 0.094 3.906 21 C -0.383 4.383 22 H 0.197 0.803 23 C -0.097 4.097 24 C 0.116 3.884 25 H 0.137 0.863 26 C -0.424 4.424 27 S 1.272 4.728 28 O -0.923 6.923 29 C 0.122 3.878 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.172 0.828 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.191 0.809 43 H 0.047 0.953 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.000 -22.176 7.953 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.019 3.981 10 H -0.002 1.002 11 C -0.142 4.142 12 C -0.159 4.159 13 C -0.069 4.069 14 N -0.307 5.307 15 C 0.261 3.739 16 O -0.435 6.435 17 C 0.313 3.687 18 O -0.394 6.394 19 N -0.335 5.335 20 C -0.030 4.030 21 C -0.501 4.501 22 H 0.214 0.786 23 C -0.135 4.135 24 C 0.015 3.985 25 H 0.155 0.845 26 C -0.563 4.563 27 S 1.472 4.528 28 O -0.919 6.919 29 C 0.001 3.999 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.189 0.811 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.208 0.792 43 H 0.066 0.934 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.795 -21.605 7.144 28.887 hybrid contribution 2.968 2.714 -0.177 4.026 sum -14.826 -18.891 6.966 25.004 Atomic orbital electron populations 1.70086 1.07750 1.27583 1.50496 1.25996 0.95577 1.03358 0.94229 0.85493 0.78167 0.78033 0.79305 1.19150 1.21374 1.18773 1.21473 0.93463 0.91081 1.51505 0.91428 1.18919 0.93084 0.94407 0.91700 1.00155 1.21548 0.97611 0.93784 1.01295 1.21834 0.98633 0.98515 0.96876 1.23325 0.95138 0.89595 0.98850 1.48558 1.04948 1.10113 1.67114 1.20537 0.83821 0.89894 0.79667 1.90723 1.62787 1.40581 1.49374 1.19778 0.82591 0.88318 0.78017 1.90267 1.60001 1.40656 1.48512 1.49212 1.06271 1.12910 1.65077 1.22620 0.89753 0.89272 1.01314 1.30070 0.98831 1.02564 1.18615 0.78604 1.23832 0.97287 0.93288 0.99136 1.23898 0.93163 0.86605 0.94831 0.84525 1.29094 1.11501 1.16428 0.99292 1.70206 1.07895 0.90571 0.84086 1.93098 1.83457 1.52889 1.62437 1.21953 0.97409 0.81798 0.98770 0.93012 0.92567 0.91914 0.94247 0.87783 0.83238 0.90476 0.90441 0.94002 0.81094 0.87770 0.92214 0.79195 0.93427 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.84 11.39 21.45 0.24 -58.59 16 2 C 0.01 0.44 5.30 84.66 0.45 0.89 16 3 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.54 -31.14 8.56 25.60 0.22 -30.93 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 9 C 0.04 2.10 2.25 -11.46 -0.03 2.07 16 10 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 11 C -0.10 -4.54 5.11 30.62 0.16 -4.38 16 12 C -0.12 -4.49 6.08 30.68 0.19 -4.30 16 13 C 0.05 1.92 6.28 86.31 0.54 2.47 16 14 N -0.58 -27.20 2.98 -819.74 -2.45 -29.64 16 15 C 0.48 22.76 7.70 87.27 0.67 23.43 16 16 O -0.56 -30.03 13.65 -3.25 -0.04 -30.08 16 17 C 0.53 20.29 7.82 87.27 0.68 20.98 16 18 O -0.52 -19.05 13.38 -3.23 -0.04 -19.09 16 19 N -0.60 -17.85 2.87 -774.07 -2.22 -20.07 16 20 C 0.09 2.74 4.67 87.30 0.41 3.15 16 21 C -0.38 -4.88 5.76 33.36 0.19 -4.68 16 22 H 0.20 1.11 8.14 -2.39 -0.02 1.09 16 23 C -0.10 -0.53 6.27 33.34 0.21 -0.32 16 24 C 0.12 1.82 4.39 46.64 0.20 2.03 16 25 H 0.14 1.87 8.05 -2.39 -0.02 1.85 16 26 C -0.42 -6.09 7.16 72.95 0.52 -5.57 16 27 S 1.27 18.78 14.24 -56.49 -0.80 17.97 16 28 O -0.92 -32.73 17.14 -148.98 -2.55 -35.28 16 29 C 0.12 6.67 5.37 86.36 0.46 7.13 16 30 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 35 H 0.15 5.44 3.81 -76.41 -0.29 5.15 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 38 H 0.04 1.72 6.46 -2.39 -0.02 1.70 16 39 H 0.17 -1.10 8.13 -2.38 -0.02 -1.12 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.19 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.08 5.08 5.17 -2.39 -0.01 5.06 16 Total: -1.00 -99.51 354.42 -0.22 -99.73 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.74 Total: 15.15 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 4.88 Total: 11.96 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.42 Total: -108.30 kcal Atomic # 8 Polarization: -81.81 SS G_CDS: -2.64 Total: -84.45 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 18.78 SS G_CDS: -0.80 Total: 17.97 kcal Total: -99.51 -0.22 -99.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.942 kcal (2) G-P(sol) polarization free energy of solvation -99.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds