Wall clock time and date at job start Sat Apr 11 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48502 * 109.46711 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 119.99580 * 3 2 1 6 6 H 1.48499 * 109.47106 * 240.00219 * 3 2 1 7 7 C 1.37880 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46755 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46775 * 180.02562 * 10 9 7 12 12 O 1.45193 * 109.46702 * 179.97438 * 11 10 9 13 13 C 1.34234 * 116.99630 * 180.02562 * 12 11 10 14 14 O 1.20822 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99720 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.47318 * 299.99344 * 15 13 12 17 17 C 1.53004 * 109.47009 * 180.02562 * 15 13 12 18 18 C 1.52999 * 109.47122 * 173.45842 * 17 15 13 19 19 H 1.09000 * 109.52579 * 58.70502 * 18 17 15 20 20 C 1.53146 * 109.52336 * 178.82981 * 18 17 15 21 21 O 1.43073 * 109.15013 * 175.21437 * 20 18 17 22 22 C 1.43079 * 113.59348 * 302.04927 * 21 20 18 23 23 C 1.53137 * 109.14837 * 57.95195 * 22 21 20 24 24 O 1.43065 * 109.52493 * 298.56966 * 18 17 15 25 25 C 1.52991 * 109.47216 * 59.99982 * 15 13 12 26 26 F 1.39898 * 109.47473 * 66.27074 * 25 15 13 27 27 F 1.39903 * 109.47143 * 186.27042 * 25 15 13 28 28 F 1.39898 * 109.47179 * 306.26765 * 25 15 13 29 29 H 0.96998 * 120.00183 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47035 * 299.99980 * 9 7 2 31 31 H 1.08993 * 109.47405 * 59.99807 * 9 7 2 32 32 H 1.09000 * 109.46504 * 299.99702 * 10 9 7 33 33 H 1.08987 * 109.47639 * 60.00028 * 10 9 7 34 34 H 1.08995 * 109.47140 * 299.99860 * 11 10 9 35 35 H 1.09001 * 109.47261 * 59.99637 * 11 10 9 36 36 H 1.09007 * 109.46713 * 293.45749 * 17 15 13 37 37 H 1.08999 * 109.47516 * 53.45511 * 17 15 13 38 38 H 1.09003 * 109.52679 * 295.11898 * 20 18 17 39 39 H 1.08997 * 109.52358 * 55.31255 * 20 18 17 40 40 H 1.08998 * 109.52027 * 177.85645 * 22 21 20 41 41 H 1.09003 * 109.52029 * 297.98440 * 22 21 20 42 42 H 1.08997 * 109.52528 * 64.59219 * 23 22 21 43 43 H 1.09001 * 109.52322 * 184.72273 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6965 1.2126 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 8 2.4241 -6.0906 0.0018 13 6 1.9110 -7.3310 0.0008 14 8 0.7132 -7.4894 -0.0001 15 6 2.8291 -8.5261 0.0019 16 1 3.4592 -8.5011 -0.8872 17 6 1.9959 -9.8094 -0.0002 18 6 2.9204 -11.0175 -0.1634 19 1 3.6450 -11.0343 0.6507 20 6 2.0905 -12.3043 -0.1364 21 8 2.9460 -13.4202 -0.4009 22 6 3.6331 -13.3309 -1.6527 23 6 4.4629 -12.0441 -1.6796 24 8 3.6085 -10.9274 -1.4144 25 6 3.7099 -8.4914 1.2524 26 9 2.9134 -8.6673 2.3890 27 9 4.6578 -9.5181 1.1838 28 9 4.3641 -7.2571 1.3279 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 0.8903 31 1 0.6248 -2.5571 -0.8896 32 1 2.8728 -3.6046 -0.8878 33 1 2.8714 -3.6039 0.8921 34 1 0.8529 -5.0447 0.8904 35 1 0.8548 -5.0450 -0.8895 36 1 1.4532 -9.8917 0.9416 37 1 1.2863 -9.7805 -0.8271 38 1 1.6319 -12.4216 0.8455 39 1 1.3132 -12.2525 -0.8987 40 1 4.2917 -14.1916 -1.7689 41 1 2.9076 -13.3148 -2.4661 42 1 5.2403 -12.0959 -0.9173 43 1 4.9224 -11.9274 -2.6611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330254232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:04 Heat of formation + Delta-G solvation = -342.411307 kcal Electronic energy + Delta-G solvation = -30834.001251 eV Core-core repulsion = 25850.375244 eV Total energy + Delta-G solvation = -4983.626008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.46573 -47.98416 -47.81801 -40.76102 -40.24297 -37.06400 -36.51876 -34.97693 -34.04083 -31.95435 -31.48227 -28.96857 -27.23760 -26.31258 -24.79539 -23.75508 -22.76841 -21.59381 -20.86642 -20.35424 -19.05588 -18.76018 -18.43802 -17.55302 -17.16449 -16.94195 -16.56047 -16.42621 -16.10747 -15.92537 -15.55023 -15.37504 -14.74235 -14.65651 -14.48705 -14.29176 -14.21013 -14.06075 -13.95226 -13.87475 -13.48997 -13.35018 -12.81702 -12.71146 -12.31755 -12.23914 -12.17006 -11.94242 -11.90191 -11.58344 -11.09366 -10.97942 -10.84747 -10.77853 -10.68760 -10.55861 -10.49039 -9.76947 -9.60259 -9.53311 -9.19852 -8.39717 -6.04721 -4.07835 1.70526 2.34315 2.51250 3.10069 3.24943 3.32129 3.36349 3.38588 3.39074 3.48656 3.78273 4.04032 4.26031 4.32616 4.42686 4.51086 4.58871 4.62721 4.64759 4.79212 4.81899 5.01558 5.07253 5.19501 5.29270 5.31189 5.38400 5.49638 5.50124 5.54623 5.93226 6.30260 6.49095 6.49899 6.53143 6.72269 6.94246 7.56677 7.59187 7.68409 7.93202 8.34064 8.98049 9.56478 11.06647 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.002157 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.191151 B =12978.488111 C =13204.935736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.344 6.344 13 C 0.464 3.536 14 O -0.486 6.486 15 C -0.128 4.128 16 H 0.159 0.841 17 C -0.101 4.101 18 C 0.035 3.965 19 H 0.091 0.909 20 C 0.033 3.967 21 O -0.377 6.377 22 C 0.022 3.978 23 C 0.026 3.974 24 O -0.373 6.373 25 C 0.463 3.537 26 F -0.176 7.176 27 F -0.172 7.172 28 F -0.161 7.161 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 -28.646 -1.479 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.260 6.260 13 C 0.304 3.696 14 O -0.374 6.374 15 C -0.148 4.148 16 H 0.176 0.824 17 C -0.138 4.138 18 C -0.023 4.023 19 H 0.109 0.891 20 C -0.044 4.044 21 O -0.296 6.296 22 C -0.055 4.055 23 C -0.051 4.051 24 O -0.293 6.293 25 C 0.409 3.591 26 F -0.157 7.157 27 F -0.154 7.154 28 F -0.142 7.142 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.403 -28.508 -1.443 29.488 hybrid contribution 0.479 0.986 0.068 1.099 sum 7.882 -27.521 -1.376 28.661 Atomic orbital electron populations 1.69953 1.06081 1.26905 1.50431 1.25032 0.94891 0.99376 0.95168 0.86596 0.79524 0.82835 0.78690 1.21269 1.20156 1.20173 1.21126 0.93109 0.90637 1.51161 0.92441 1.19049 0.93799 0.90687 0.97699 1.21790 0.99995 0.90690 1.02221 1.23651 0.91114 0.83254 1.02454 1.86559 1.42629 1.14518 1.82282 1.22491 0.87930 0.84939 0.74221 1.90700 1.15903 1.86672 1.44082 1.22347 0.98287 0.95005 0.99192 0.82355 1.21561 0.97155 0.88353 1.06761 1.23164 0.95406 0.95105 0.88606 0.89146 1.23223 0.92380 0.85519 1.03297 1.88113 1.60843 1.42529 1.38107 1.23283 0.96431 0.98975 0.86811 1.23255 0.92712 0.86152 1.02983 1.88068 1.60679 1.42926 1.37596 1.19976 0.79660 0.74468 0.85016 1.93221 1.73459 1.95126 1.53936 1.93130 1.66594 1.59172 1.96462 1.93318 1.81999 1.42309 1.96534 0.92820 0.96203 0.96209 0.91988 0.91936 0.91148 0.91117 0.87670 0.87319 0.87360 0.91664 0.87688 0.91967 0.91843 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.24 5.53 -26.72 -0.15 -2.39 16 11 C 0.07 1.21 5.47 37.16 0.20 1.42 16 12 O -0.34 -5.55 8.98 -39.27 -0.35 -5.91 16 13 C 0.46 6.56 7.10 36.01 0.26 6.81 16 14 O -0.49 -7.79 15.64 -18.75 -0.29 -8.08 16 15 C -0.13 -1.33 2.34 -91.77 -0.21 -1.55 16 16 H 0.16 1.43 7.54 -51.93 -0.39 1.04 16 17 C -0.10 -0.86 3.70 -26.73 -0.10 -0.96 16 18 C 0.03 0.28 2.43 -26.66 -0.06 0.21 16 19 H 0.09 0.75 5.44 -51.93 -0.28 0.47 16 20 C 0.03 0.24 6.34 37.23 0.24 0.47 16 21 O -0.38 -3.18 10.85 -48.76 -0.53 -3.71 16 22 C 0.02 0.13 7.05 37.23 0.26 0.39 16 23 C 0.03 0.16 7.05 37.23 0.26 0.42 16 24 O -0.37 -3.18 9.77 -48.76 -0.48 -3.66 16 25 C 0.46 5.11 2.66 37.15 0.10 5.21 16 26 F -0.18 -2.04 16.29 2.25 0.04 -2.00 16 27 F -0.17 -1.71 14.26 2.25 0.03 -1.68 16 28 F -0.16 -2.11 15.91 2.25 0.04 -2.08 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.27 8.14 -51.94 -0.42 0.85 16 34 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.10 0.84 7.45 -51.93 -0.39 0.45 16 37 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -32.07 367.12 -6.14 -38.21 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -6.08 Total: -4.28 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 0.24 Total: -2.90 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.65 Total: -21.36 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.10 Total: -5.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.07 -6.14 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330254232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -304.198 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -336.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -342.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds