Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 119.99825 * 2 1 4 4 H 1.48504 * 109.46998 * 239.99732 * 3 2 1 5 5 H 1.48493 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46887 * 120.00055 * 3 2 1 7 7 C 1.40030 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.40619 * 119.78751 * 179.97438 * 9 7 2 11 11 C 1.38316 * 119.13007 * 179.97438 * 10 9 7 12 12 C 1.38683 * 118.67004 * 0.02562 * 11 10 9 13 13 C 1.39655 * 119.50323 * 359.97438 * 12 11 10 14 14 N 1.39178 * 119.57890 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99634 * 185.26409 * 14 13 12 16 16 O 1.21548 * 120.00393 * 354.84570 * 15 14 13 17 17 C 1.47803 * 119.99933 * 174.83875 * 15 14 13 18 18 C 1.39596 * 120.14764 * 180.02562 * 17 15 14 19 19 C 1.37955 * 119.84871 * 179.97438 * 18 17 15 20 20 C 1.38360 * 120.14739 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.84775 * 179.97438 * 20 19 18 22 22 N 1.46501 * 109.47152 * 90.00355 * 21 20 19 23 23 C 1.34768 * 119.99984 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99987 * 179.97438 * 23 22 21 25 25 O 1.21584 * 120.00216 * 359.97438 * 23 22 21 26 26 C 1.38355 * 120.29897 * 0.23200 * 20 19 18 27 27 C 1.37956 * 120.14738 * 359.48732 * 26 20 19 28 28 N 1.31948 * 120.84126 * 0.27883 * 13 12 11 29 29 H 0.97001 * 120.00081 * 0.02562 * 1 2 3 30 30 H 1.07990 * 120.43085 * 0.02562 * 10 9 7 31 31 H 1.08002 * 120.65789 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25078 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00209 * 5.26998 * 14 13 12 34 34 H 1.08004 * 120.07368 * 359.95690 * 18 17 15 35 35 H 1.08000 * 119.92445 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.47002 * 209.99881 * 21 20 19 37 37 H 1.09001 * 109.47402 * 329.99742 * 21 20 19 38 38 H 0.96994 * 119.99597 * 359.97438 * 22 21 20 39 39 H 0.97002 * 119.99976 * 0.02562 * 24 23 22 40 40 H 0.96999 * 119.99851 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.93040 * 179.71923 * 26 20 19 42 42 H 1.07992 * 120.07807 * 180.25529 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6518 0.0005 11 6 1.3033 -4.8417 0.0011 12 6 -0.0826 -4.7936 0.0011 13 6 -0.7279 -3.5551 0.0010 14 7 -2.1187 -3.5050 0.0016 15 6 -2.7503 -2.3192 -0.1055 16 8 -2.1087 -1.2869 -0.1082 17 6 -4.2232 -2.2741 -0.2199 18 6 -4.8806 -1.0477 -0.3315 19 6 -6.2555 -1.0128 -0.4384 20 6 -6.9829 -2.1898 -0.4347 21 6 -8.4847 -2.1438 -0.5513 22 7 -8.8667 -2.1981 -1.9646 23 6 -10.1684 -2.1705 -2.3123 24 7 -10.5198 -2.2199 -3.6125 25 8 -11.0259 -2.1010 -1.4531 26 6 -6.3381 -3.4084 -0.3190 27 6 -4.9632 -3.4579 -0.2172 28 7 -0.0357 -2.4317 -0.0045 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6559 0.0010 31 1 1.8218 -5.7892 0.0007 32 1 -0.6588 -5.7072 0.0019 33 1 -2.6335 -4.3234 0.0791 34 1 -4.3140 -0.1282 -0.3339 35 1 -6.7653 -0.0646 -0.5244 36 1 -8.9162 -2.9955 -0.0254 37 1 -8.8553 -1.2186 -0.1099 38 1 -8.1826 -2.2539 -2.6500 39 1 -9.8358 -2.2757 -4.2980 40 1 -11.4568 -2.2004 -3.8628 41 1 -6.9121 -4.3233 -0.3122 42 1 -4.4607 -4.4100 -0.1311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471517478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -6.635365 kcal Electronic energy + Delta-G solvation = -27686.663901 eV Core-core repulsion = 23631.349393 eV Total energy + Delta-G solvation = -4055.314508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39552 -40.84840 -40.01488 -38.89833 -35.99658 -35.88094 -34.91267 -34.58560 -32.48003 -32.15383 -31.94855 -30.74699 -27.80910 -27.19110 -24.45539 -23.63409 -23.28418 -22.62274 -22.10662 -20.96622 -19.78999 -19.32880 -18.57608 -18.22280 -17.96239 -16.73222 -16.41002 -16.29337 -16.22010 -15.99679 -15.91411 -15.73523 -15.68081 -15.38371 -15.00133 -14.70312 -14.48930 -14.21296 -14.09649 -13.73062 -13.61673 -13.32537 -12.86618 -12.74025 -12.58116 -12.51771 -12.31743 -12.01440 -11.79602 -11.55177 -11.50841 -10.87819 -10.76113 -10.71043 -10.00637 -9.93787 -9.91698 -9.86121 -9.12086 -8.83494 -8.05563 -6.42305 -0.22141 0.40701 0.94949 1.26407 1.39473 1.51051 1.53442 1.89680 2.19100 2.25237 2.26312 2.31210 2.89571 3.07561 3.54477 3.72287 3.80979 3.85080 4.01854 4.05686 4.27388 4.37975 4.40943 4.65025 4.68776 4.74878 4.83716 4.88314 4.96048 5.05176 5.07047 5.24513 5.30662 5.42363 5.44144 5.51076 5.68279 5.82519 5.87962 5.91130 5.92647 6.06716 6.14618 6.36239 6.71348 6.82989 7.06926 7.08709 7.61926 7.66666 8.33362 8.56199 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.002376 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.270548 B =11783.810135 C =13120.876668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.086 0.914 9 C 0.235 3.765 10 C -0.328 4.328 11 C -0.034 4.034 12 C -0.344 4.344 13 C 0.347 3.653 14 N -0.649 5.649 15 C 0.501 3.499 16 O -0.456 6.456 17 C -0.127 4.127 18 C -0.081 4.081 19 C -0.100 4.100 20 C -0.082 4.082 21 C 0.184 3.816 22 N -0.730 5.730 23 C 0.700 3.300 24 N -0.850 5.850 25 O -0.646 6.646 26 C -0.095 4.095 27 C -0.088 4.088 28 N -0.508 5.508 29 H 0.270 0.730 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.419 0.581 34 H 0.115 0.885 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.413 0.587 40 H 0.420 0.580 41 H 0.160 0.840 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 -5.954 -6.048 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.215 4.215 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.110 3.890 10 C -0.351 4.351 11 C -0.058 4.058 12 C -0.369 4.369 13 C 0.108 3.892 14 N -0.298 5.298 15 C 0.286 3.714 16 O -0.324 6.324 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.118 4.118 20 C -0.083 4.083 21 C 0.060 3.940 22 N -0.387 5.387 23 C 0.398 3.602 24 N -0.418 5.418 25 O -0.529 6.529 26 C -0.113 4.113 27 C -0.107 4.107 28 N -0.228 5.228 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.258 0.742 34 H 0.133 0.867 35 H 0.163 0.837 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.247 0.753 39 H 0.244 0.756 40 H 0.253 0.747 41 H 0.178 0.822 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.189 -4.152 -5.248 20.322 hybrid contribution 1.260 -0.378 -0.573 1.435 sum -17.929 -4.531 -5.821 19.387 Atomic orbital electron populations 1.70514 1.07287 1.28068 1.25209 1.27043 0.96030 1.04024 0.94379 0.85381 0.78651 0.76489 0.79860 1.18461 1.19855 1.18516 1.19878 0.94463 0.90462 1.44830 0.89594 1.18893 0.87958 0.93454 0.88720 1.21820 0.99244 0.93838 1.20239 1.21045 0.93559 0.97348 0.93884 1.20977 0.95213 0.95669 1.25076 1.19124 0.84972 0.91230 0.93826 1.43232 1.03735 1.10227 1.72619 1.19346 0.88538 0.84483 0.79020 1.91215 1.66552 1.32475 1.42149 1.20128 0.91335 0.96071 1.05486 1.21253 0.95129 0.96931 0.96717 1.21151 0.92216 0.99316 0.99112 1.20022 0.94829 0.93320 1.00137 1.19986 0.89039 1.03383 0.81612 1.45002 1.05568 1.79324 1.08846 1.16169 0.82889 0.77315 0.83829 1.42824 1.13206 1.80811 1.04999 1.90950 1.50757 1.60386 1.50791 1.21280 0.93345 0.98477 0.98209 1.21535 0.94754 0.96993 0.97388 1.68668 1.07376 1.25430 1.21301 0.91893 0.87726 0.84411 0.84827 0.74192 0.86705 0.83692 0.90087 0.90920 0.75289 0.75591 0.74689 0.82245 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.02 8.98 21.84 0.20 -39.82 16 2 C 0.01 0.58 5.50 85.29 0.47 1.05 16 3 Si 0.98 40.81 29.56 68.60 2.03 42.84 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.47 -26.63 9.14 23.47 0.21 -26.42 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.24 13.66 6.55 40.21 0.26 13.93 16 10 C -0.33 -16.59 9.83 22.87 0.22 -16.36 16 11 C -0.03 -1.47 10.15 22.39 0.23 -1.25 16 12 C -0.34 -14.50 9.95 22.72 0.23 -14.28 16 13 C 0.35 16.80 7.43 133.26 0.99 17.79 16 14 N -0.65 -25.01 5.33 -311.04 -1.66 -26.66 16 15 C 0.50 20.62 7.73 86.77 0.67 21.29 16 16 O -0.46 -23.92 12.10 -3.87 -0.05 -23.97 16 17 C -0.13 -3.73 5.87 -20.09 -0.12 -3.85 16 18 C -0.08 -2.25 9.60 22.53 0.22 -2.03 16 19 C -0.10 -1.93 9.68 22.23 0.22 -1.72 16 20 C -0.08 -1.28 5.25 -19.81 -0.10 -1.39 16 21 C 0.18 2.63 5.79 85.63 0.50 3.13 16 22 N -0.73 -9.16 5.55 -482.29 -2.68 -11.84 16 23 C 0.70 11.77 8.84 179.06 1.58 13.35 16 24 N -0.85 -6.89 8.88 -184.75 -1.64 -8.53 16 25 O -0.65 -17.45 17.18 -3.98 -0.07 -17.52 16 26 C -0.09 -1.41 9.68 22.23 0.22 -1.20 16 27 C -0.09 -1.77 9.54 22.53 0.21 -1.55 16 28 N -0.51 -29.35 5.73 -186.40 -1.07 -30.42 16 29 H 0.27 14.74 8.29 -92.71 -0.77 13.97 16 30 H 0.10 4.92 8.06 -2.92 -0.02 4.90 16 31 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 32 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 33 H 0.42 11.63 6.75 -92.71 -0.63 11.00 16 34 H 0.11 3.69 7.65 -2.91 -0.02 3.67 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.08 1.16 8.08 -2.38 -0.02 1.15 16 37 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.41 3.37 8.48 -92.71 -0.79 2.58 16 39 H 0.41 0.81 8.84 -92.71 -0.82 -0.01 16 40 H 0.42 2.79 8.93 -92.71 -0.83 1.96 16 41 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.15 2.27 6.42 -2.91 -0.02 2.25 16 Total: -1.00 -84.57 364.82 -0.86 -85.43 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -1.93 Total: 29.99 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 6.00 Total: 0.50 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -6.85 Total: -117.27 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.12 Total: -41.49 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -84.57 -0.86 -85.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471517478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.794 kcal (2) G-P(sol) polarization free energy of solvation -84.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds