Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48497 * 109.47508 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46830 * 299.99437 * 3 2 1 6 6 H 1.48502 * 109.47372 * 59.99007 * 3 2 1 7 7 C 1.39903 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99842 * 175.56535 * 7 2 1 9 9 C 1.41156 * 119.99771 * 355.56547 * 7 2 1 10 10 C 1.40872 * 120.15947 * 214.77806 * 9 7 2 11 11 C 1.36375 * 119.82162 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17360 * 359.97438 * 11 10 9 13 13 N 1.39239 * 119.83165 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00439 * 35.29385 * 13 12 11 15 15 O 1.21585 * 120.00004 * 355.71384 * 14 13 12 16 16 N 1.34780 * 120.00267 * 175.70774 * 14 13 12 17 17 C 1.46503 * 119.99885 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47190 * 35.00140 * 17 16 14 19 19 C 1.50702 * 109.47009 * 274.99936 * 17 16 14 20 20 N 1.34780 * 119.99755 * 180.02562 * 19 17 16 21 21 O 1.21274 * 119.99889 * 0.02562 * 19 17 16 22 22 C 1.50704 * 109.46898 * 155.00326 * 17 16 14 23 23 C 1.38224 * 119.61794 * 205.00051 * 22 17 16 24 24 C 1.38627 * 119.16165 * 180.27181 * 23 22 17 25 25 C 1.38672 * 118.41973 * 359.48639 * 24 23 22 26 26 C 1.38191 * 119.16248 * 0.47079 * 25 24 23 27 27 N 1.31855 * 119.61710 * 24.97336 * 22 17 16 28 28 C 1.39479 * 120.33211 * 0.27635 * 12 11 10 29 29 C 1.36381 * 120.16810 * 359.44350 * 28 12 11 30 30 H 0.96999 * 120.00291 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.08831 * 0.02562 * 10 9 7 32 32 H 1.08005 * 119.91018 * 179.97438 * 11 10 9 33 33 H 0.97002 * 119.99591 * 215.29089 * 13 12 11 34 34 H 0.96995 * 119.99830 * 0.02562 * 16 14 13 35 35 H 0.96998 * 119.99559 * 0.02562 * 20 19 17 36 36 H 0.96997 * 119.99554 * 179.97438 * 20 19 17 37 37 H 1.08002 * 120.41630 * 0.02562 * 23 22 17 38 38 H 1.07996 * 120.79023 * 179.72140 * 24 23 22 39 39 H 1.07998 * 120.42328 * 180.21588 * 25 24 23 40 40 H 1.07998 * 119.61391 * 179.76721 * 26 25 24 41 41 H 1.08003 * 119.91813 * 179.72673 * 28 12 11 42 42 H 1.08002 * 120.08547 * 180.27561 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0718 9 6 1.3057 -2.4321 0.0956 10 6 1.8650 -3.5180 0.7975 11 6 1.1803 -4.6942 0.8846 12 6 -0.0706 -4.8235 0.2814 13 7 -0.7637 -6.0275 0.3753 14 6 -0.6816 -6.7666 1.4993 15 8 0.0580 -6.4220 2.4007 16 7 -1.4195 -7.8875 1.6243 17 6 -1.3298 -8.6911 2.8459 18 1 -1.1832 -8.0340 3.7031 19 6 -0.1661 -9.6423 2.7372 20 7 0.1111 -10.4866 3.7505 21 8 0.5210 -9.6481 1.7379 22 6 -2.6043 -9.4750 3.0262 23 6 -2.9840 -9.8799 4.2920 24 6 -4.1551 -10.6055 4.4462 25 6 -4.9095 -10.8887 3.3176 26 6 -4.4669 -10.4499 2.0843 27 7 -3.3444 -9.7663 1.9745 28 6 -0.6285 -3.7545 -0.4196 29 6 0.0416 -2.5702 -0.5105 30 1 -0.4850 0.8400 -0.0004 31 1 2.8333 -3.4192 1.2653 32 1 1.6080 -5.5277 1.4220 33 1 -1.3056 -6.3344 -0.3684 34 1 -2.0093 -8.1625 0.9050 35 1 -0.4388 -10.4822 4.5496 36 1 0.8599 -11.0992 3.6803 37 1 -2.3739 -9.6375 5.1496 38 1 -4.4744 -10.9389 5.4226 39 1 -5.8292 -11.4486 3.4009 40 1 -5.0467 -10.6696 1.2001 41 1 -1.5957 -3.8635 -0.8878 42 1 -0.3937 -1.7419 -1.0499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475838149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = 5.176406 kcal Electronic energy + Delta-G solvation = -28039.925350 eV Core-core repulsion = 23985.123039 eV Total energy + Delta-G solvation = -4054.802311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15023 -39.84984 -39.05985 -37.28442 -34.99574 -34.22066 -33.93462 -32.90737 -32.76268 -31.64878 -29.47380 -28.83844 -27.47825 -24.72728 -24.02674 -23.19205 -21.81799 -20.99432 -20.41966 -19.98096 -18.29033 -17.92761 -17.53617 -17.17091 -16.90667 -16.53806 -16.30232 -15.78252 -15.11359 -14.90022 -14.74494 -14.57166 -14.20315 -13.98859 -13.84135 -13.75126 -13.48483 -12.89823 -12.76382 -12.59410 -12.07522 -12.00478 -11.60990 -11.25914 -11.09061 -10.91895 -10.65662 -10.55627 -10.35021 -10.01662 -9.98813 -9.87107 -9.51771 -9.44682 -9.35241 -9.15011 -8.90239 -8.75488 -7.42267 -6.71812 -6.51758 -4.23440 0.52927 0.77793 2.45168 2.68458 2.91348 3.12642 3.15427 3.18078 3.22097 3.26922 3.47419 3.66875 3.92264 4.06199 4.21303 4.38176 4.54818 4.59501 4.76938 4.77297 4.81853 4.98112 5.09845 5.18714 5.56272 5.65756 5.76169 6.12963 6.30774 6.41465 6.58272 6.61071 6.88438 6.94096 7.09144 7.15961 7.26216 7.38803 7.46843 7.52590 7.77069 7.98290 8.08060 8.09521 8.20682 8.42247 8.57972 8.74853 9.03083 9.03758 9.19652 10.39507 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.002230 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.960864 B =12553.132999 C =13108.919875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.096 3.904 10 C -0.203 4.203 11 C -0.086 4.086 12 C 0.027 3.973 13 N -0.663 5.663 14 C 0.704 3.296 15 O -0.580 6.580 16 N -0.721 5.721 17 C 0.203 3.797 18 H 0.131 0.869 19 C 0.512 3.488 20 N -0.856 5.856 21 O -0.514 6.514 22 C 0.125 3.875 23 C -0.164 4.164 24 C -0.067 4.067 25 C -0.171 4.171 26 C 0.109 3.891 27 N -0.472 5.472 28 C -0.123 4.123 29 C -0.140 4.140 30 H 0.275 0.725 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.393 0.607 34 H 0.408 0.592 35 H 0.397 0.603 36 H 0.402 0.598 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.091 0.909 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 -22.106 8.740 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.223 4.223 11 C -0.106 4.106 12 C -0.065 4.065 13 N -0.308 5.308 14 C 0.405 3.595 15 O -0.457 6.457 16 N -0.378 5.378 17 C 0.091 3.909 18 H 0.149 0.851 19 C 0.293 3.707 20 N -0.421 5.421 21 O -0.386 6.386 22 C -0.013 4.013 23 C -0.184 4.184 24 C -0.093 4.093 25 C -0.191 4.191 26 C -0.048 4.048 27 N -0.181 5.181 28 C -0.144 4.144 29 C -0.160 4.160 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.226 0.774 34 H 0.244 0.756 35 H 0.225 0.775 36 H 0.234 0.766 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.109 0.891 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.929 -21.161 7.981 25.118 hybrid contribution -0.617 -0.143 0.729 0.965 sum -11.546 -21.304 8.709 25.749 Atomic orbital electron populations 1.69781 1.07220 1.28372 1.38889 1.25860 0.94925 1.01054 0.92715 0.86170 0.80604 0.81026 0.78271 1.18653 1.20099 1.20095 1.19505 0.94680 0.90208 1.44854 0.90676 1.17720 0.92356 0.92037 0.88486 1.20808 1.01134 0.94931 1.05447 1.20447 0.92719 0.97886 0.99557 1.17083 0.93681 0.84877 1.10896 1.42008 1.51520 1.22094 1.15144 1.15888 0.80737 0.79617 0.83282 1.90887 1.41877 1.71951 1.40992 1.44521 1.48467 1.25212 1.19648 1.19303 0.88612 0.91108 0.91871 0.85137 1.20908 0.85892 0.80736 0.83153 1.43826 1.36118 1.41691 1.20499 1.90780 1.49932 1.67722 1.30202 1.20854 0.94856 0.95911 0.89722 1.21855 0.98559 1.00246 0.97739 1.21591 0.93318 0.94837 0.99528 1.22232 1.01432 1.01655 0.93788 1.22816 0.91826 0.92540 0.97612 1.67242 1.05803 1.12031 1.33057 1.20295 0.98418 0.93009 1.02672 1.21167 0.97295 0.95440 1.02143 0.91368 0.88675 0.87271 0.77367 0.75552 0.77457 0.76639 0.84150 0.84215 0.84394 0.82181 0.89134 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.83 10.59 55.55 0.59 -21.24 16 2 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 3 Si 0.91 19.62 29.56 -169.99 -5.03 14.60 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.46 -12.74 9.02 -37.85 -0.34 -13.08 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.20 -5.42 9.74 -39.26 -0.38 -5.80 16 11 C -0.09 -2.21 8.61 -39.79 -0.34 -2.55 16 12 C 0.03 0.65 6.31 -83.57 -0.53 0.12 16 13 N -0.66 -13.01 5.31 -14.10 -0.07 -13.09 16 14 C 0.70 13.89 8.22 -86.92 -0.71 13.17 16 15 O -0.58 -13.49 13.42 5.29 0.07 -13.42 16 16 N -0.72 -10.98 4.58 -60.96 -0.28 -11.26 16 17 C 0.20 2.56 2.64 -70.23 -0.19 2.37 16 18 H 0.13 1.61 7.55 -51.93 -0.39 1.22 16 19 C 0.51 6.90 7.45 -10.98 -0.08 6.82 16 20 N -0.86 -7.08 8.77 31.22 0.27 -6.80 16 21 O -0.51 -9.47 17.16 5.56 0.10 -9.38 16 22 C 0.13 1.21 5.79 -82.58 -0.48 0.73 16 23 C -0.16 -1.03 8.84 -39.44 -0.35 -1.38 16 24 C -0.07 -0.33 10.18 -39.28 -0.40 -0.73 16 25 C -0.17 -0.88 10.11 -39.44 -0.40 -1.28 16 26 C 0.11 0.78 11.18 -17.55 -0.20 0.58 16 27 N -0.47 -4.74 9.04 -9.47 -0.09 -4.83 16 28 C -0.12 -2.95 9.90 -39.79 -0.39 -3.35 16 29 C -0.14 -3.75 8.62 -39.26 -0.34 -4.09 16 30 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 31 H 0.10 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.11 2.84 6.22 -52.48 -0.33 2.52 16 33 H 0.39 6.29 8.83 -40.82 -0.36 5.93 16 34 H 0.41 5.56 7.64 -40.82 -0.31 5.24 16 35 H 0.40 1.92 7.33 -40.82 -0.30 1.62 16 36 H 0.40 2.92 8.93 -40.82 -0.36 2.56 16 37 H 0.14 0.50 7.58 -52.49 -0.40 0.10 16 38 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 39 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.13 3.60 6.13 -52.49 -0.32 3.28 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -37.32 363.97 -9.20 -46.53 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -4.43 Total: 18.06 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -5.82 Total: -4.66 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.42 Total: -57.21 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.17 Total: -22.79 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.32 -9.20 -46.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475838149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.702 kcal (2) G-P(sol) polarization free energy of solvation -37.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds