Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38361 * 119.85527 * 2 1 4 4 C 1.37940 * 120.15945 * 180.23622 * 3 2 1 5 5 C 1.39599 * 119.87896 * 359.51192 * 4 3 2 6 6 C 1.47849 * 120.14302 * 180.23374 * 5 4 3 7 7 O 1.21559 * 119.99216 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00678 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00331 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47257 * 179.97438 * 9 8 6 11 11 O 1.42899 * 109.47405 * 64.99464 * 10 9 8 12 12 C 1.42892 * 114.00294 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47116 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47172 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47151 * 179.97438 * 14 13 12 16 16 C 1.36937 * 119.99968 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00146 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00051 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00442 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00268 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47032 * 89.99446 * 20 18 16 22 22 H 1.48495 * 109.47306 * 210.00149 * 20 18 16 23 23 H 1.48498 * 109.46938 * 329.99943 * 20 18 16 24 24 C 1.39538 * 119.72285 * 0.25223 * 5 4 3 25 25 C 1.38103 * 119.83953 * 0.02562 * 24 5 4 26 26 Cl 1.73601 * 119.94136 * 179.97438 * 25 24 5 27 27 H 1.09001 * 109.46894 * 270.22980 * 1 2 3 28 28 H 1.08994 * 109.47287 * 30.22768 * 1 2 3 29 29 H 1.09003 * 109.46423 * 150.23312 * 1 2 3 30 30 H 1.08002 * 119.92307 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.06486 * 179.79391 * 4 3 2 32 32 H 0.97005 * 119.99746 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47131 * 299.99352 * 9 8 6 34 34 H 1.09001 * 109.47490 * 59.99888 * 9 8 6 35 35 H 1.09001 * 109.47616 * 184.99678 * 10 9 8 36 36 H 1.09005 * 109.47085 * 304.99908 * 10 9 8 37 37 H 1.09001 * 109.47598 * 300.00407 * 12 11 10 38 38 H 1.09000 * 109.47240 * 60.00685 * 12 11 10 39 39 H 1.08996 * 109.47312 * 299.99834 * 13 12 11 40 40 H 1.09001 * 109.47458 * 60.00186 * 13 12 11 41 41 H 1.09005 * 109.47061 * 300.00071 * 14 13 12 42 42 H 1.09000 * 109.47256 * 60.00380 * 14 13 12 43 43 H 0.96995 * 119.99967 * 0.02562 * 15 14 13 44 44 H 0.96996 * 120.00770 * 179.97438 * 19 18 16 45 45 H 1.07998 * 120.08128 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2073 -0.0049 5 6 4.2771 0.0006 0.0004 6 6 5.7556 0.0017 0.0004 7 8 6.3625 1.0549 -0.0047 8 7 6.4304 -1.1649 0.0050 9 6 7.8953 -1.1637 0.0056 10 6 8.4065 -2.6058 0.0118 11 8 8.0294 -3.2502 -1.2066 12 6 8.4599 -4.6093 -1.3027 13 6 8.0038 -5.1953 -2.6405 14 6 8.4642 -6.6508 -2.7432 15 7 8.0270 -7.2121 -4.0238 16 6 8.3258 -8.5105 -4.3400 17 1 8.8835 -9.1209 -3.6452 18 6 7.9121 -9.0422 -5.5536 19 7 7.2320 -8.2986 -6.4003 20 14 8.3203 -10.8133 -5.9853 21 1 7.2316 -11.7028 -5.5073 22 1 8.4567 -10.9450 -7.4581 23 1 9.5974 -11.1998 -5.3335 24 6 3.5774 -1.2067 0.0053 25 6 2.1964 -1.2006 0.0044 26 17 1.3233 -2.7010 0.0099 27 1 -0.3633 0.0041 1.0277 28 1 -0.3633 0.8879 -0.5173 29 1 -0.3632 -0.8921 -0.5102 30 1 1.6522 2.1332 0.0004 31 1 4.1113 2.1449 -0.0083 32 1 5.9461 -2.0054 0.0087 33 1 8.2586 -0.6531 -0.8862 34 1 8.2580 -0.6463 0.8937 35 1 9.4928 -2.6059 0.1017 36 1 7.9720 -3.1417 0.8558 37 1 9.5472 -4.6515 -1.2398 38 1 8.0261 -5.1865 -0.4862 39 1 6.9165 -5.1533 -2.7038 40 1 8.4379 -4.6182 -3.4569 41 1 9.5516 -6.6933 -2.6797 42 1 8.0297 -7.2278 -1.9268 43 1 7.5259 -6.6640 -4.6477 44 1 6.9432 -8.6699 -7.2485 45 1 4.1146 -2.1436 0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485795392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -65.992719 kcal Electronic energy + Delta-G solvation = -25513.789529 eV Core-core repulsion = 21557.008587 eV Total energy + Delta-G solvation = -3956.780942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65631 -39.12690 -38.17879 -36.79954 -35.51427 -34.81952 -33.47199 -32.34630 -31.30445 -30.28976 -29.19697 -27.63068 -25.09349 -23.58743 -23.32437 -22.54529 -22.28419 -20.86561 -20.76730 -18.53242 -17.08797 -17.00697 -16.82974 -16.20058 -15.85330 -15.61844 -15.45577 -15.38022 -14.70122 -14.54294 -14.48105 -14.23090 -14.06449 -13.52038 -13.33951 -13.04815 -13.03856 -12.84592 -12.76506 -12.36298 -12.22835 -11.81764 -11.80169 -11.67973 -11.33825 -11.28884 -10.92250 -10.77668 -10.71250 -10.62582 -10.29397 -10.06347 -9.71881 -9.67417 -9.51137 -9.35640 -9.09051 -8.88089 -6.93389 -5.76470 -3.05922 0.28722 0.69619 1.69610 2.40459 2.79940 3.32015 3.43589 3.46337 3.49931 3.51419 4.11513 4.17621 4.46434 4.55954 4.60028 4.66682 4.72541 4.84761 4.96663 5.08391 5.11558 5.13812 5.22105 5.24000 5.26273 5.35894 5.50960 5.55948 5.56632 5.58690 5.61548 5.81099 5.85405 5.93376 6.05052 6.07374 6.20626 6.24592 6.34498 6.79947 6.84482 7.12192 7.15073 7.69128 7.85833 8.42191 9.53115 10.10859 10.45540 11.46449 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.002029 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.830862 B =13795.567333 C =15931.145712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.051 4.051 3 C -0.118 4.118 4 C -0.051 4.051 5 C -0.128 4.128 6 C 0.561 3.439 7 O -0.537 6.537 8 N -0.717 5.717 9 C 0.123 3.877 10 C 0.047 3.953 11 O -0.387 6.387 12 C 0.068 3.932 13 C -0.125 4.125 14 C 0.157 3.843 15 N -0.733 5.733 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.071 4.071 25 C -0.046 4.046 26 Cl -0.056 7.056 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.405 0.595 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 20.940 19.332 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.052 4.052 3 C -0.136 4.136 4 C -0.070 4.070 5 C -0.132 4.132 6 C 0.348 3.652 7 O -0.416 6.416 8 N -0.370 5.370 9 C 0.000 4.000 10 C -0.030 4.030 11 O -0.306 6.306 12 C -0.009 4.009 13 C -0.163 4.163 14 C 0.029 3.971 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.090 4.090 25 C -0.073 4.073 26 Cl -0.027 7.027 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.241 0.759 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.159 21.454 19.183 30.520 hybrid contribution -0.039 -1.620 -0.330 1.654 sum -10.198 19.834 18.853 29.203 Atomic orbital electron populations 1.20970 0.89834 1.04032 1.03309 1.20037 0.97154 0.91391 0.96614 1.21023 0.93770 0.97448 1.01365 1.21372 0.93813 0.97995 0.93850 1.19854 0.93095 0.93738 1.06485 1.18112 0.86792 0.83871 0.76402 1.90784 1.69724 1.31048 1.50007 1.45848 1.07596 1.08709 1.74827 1.21448 0.79418 0.95772 1.03396 1.22727 0.99795 0.92440 0.88053 1.87930 1.78844 1.26267 1.37609 1.22516 0.98410 0.81151 0.98800 1.21672 1.02148 0.97040 0.95403 1.20511 0.96557 0.90018 0.90019 1.42338 1.66918 1.12015 1.16476 1.19228 1.29106 0.88338 1.00563 0.91140 1.24768 1.00955 0.98346 0.97004 1.69662 1.42832 1.35729 1.09925 0.86165 0.77882 0.84626 0.77368 1.21681 1.21720 1.20747 1.21225 0.92356 0.98295 0.97170 1.20697 0.92144 0.87555 1.06903 1.98395 1.76203 1.31307 1.96831 0.90162 0.90637 0.90369 0.84262 0.83904 0.75900 0.90130 0.89770 0.91384 0.92628 0.93174 0.93257 0.91190 0.91130 0.96326 0.96347 0.78174 0.93453 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.61 36.01 0.35 -0.32 16 2 C -0.05 -0.38 5.89 -104.50 -0.62 -0.99 16 3 C -0.12 -0.80 9.68 -39.64 -0.38 -1.18 16 4 C -0.05 -0.43 9.59 -39.18 -0.38 -0.81 16 5 C -0.13 -1.23 5.87 -104.97 -0.62 -1.85 16 6 C 0.56 6.30 7.77 -12.33 -0.10 6.20 16 7 O -0.54 -7.60 16.35 5.31 0.09 -7.52 16 8 N -0.72 -6.86 5.45 -61.25 -0.33 -7.20 16 9 C 0.12 1.11 6.06 -4.05 -0.02 1.09 16 10 C 0.05 0.41 6.07 37.16 0.23 0.63 16 11 O -0.39 -4.75 10.29 -35.23 -0.36 -5.12 16 12 C 0.07 0.87 5.94 37.16 0.22 1.09 16 13 C -0.12 -2.06 5.70 -26.73 -0.15 -2.21 16 14 C 0.16 3.16 6.26 -4.04 -0.03 3.14 16 15 N -0.73 -19.06 5.60 -59.91 -0.34 -19.40 16 16 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C -0.07 -0.62 9.32 -39.15 -0.36 -0.99 16 25 C -0.05 -0.40 6.31 -39.56 -0.25 -0.65 16 26 Cl -0.06 -0.49 27.27 -51.86 -1.41 -1.91 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.08 0.45 6.88 -51.93 -0.36 0.10 16 30 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.14 1.15 7.65 -52.49 -0.40 0.75 16 32 H 0.40 3.34 6.51 -40.82 -0.27 3.07 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.52 7.67 -40.82 -0.31 10.20 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.14 1.04 6.40 -52.49 -0.34 0.70 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -34.15 395.41 -9.77 -43.92 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.71 Total: 6.06 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.36 Total: -4.40 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.05 Total: -54.55 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.28 Total: -12.63 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.41 Total: -1.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.15 -9.77 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485795392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.076 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds