Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38361 * 119.85527 * 2 1 4 4 C 1.37940 * 120.15945 * 180.23622 * 3 2 1 5 5 C 1.39599 * 119.87896 * 359.51192 * 4 3 2 6 6 C 1.47849 * 120.14302 * 180.23374 * 5 4 3 7 7 O 1.21559 * 119.99216 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00678 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00331 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47257 * 179.97438 * 9 8 6 11 11 O 1.42899 * 109.47405 * 64.99464 * 10 9 8 12 12 C 1.42892 * 114.00294 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47116 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47172 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47151 * 179.97438 * 14 13 12 16 16 C 1.36937 * 119.99968 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00146 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00051 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00442 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00268 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47032 * 89.99446 * 20 18 16 22 22 H 1.48495 * 109.47306 * 210.00149 * 20 18 16 23 23 H 1.48498 * 109.46938 * 329.99943 * 20 18 16 24 24 C 1.39538 * 119.72285 * 0.25223 * 5 4 3 25 25 C 1.38103 * 119.83953 * 0.02562 * 24 5 4 26 26 Cl 1.73601 * 119.94136 * 179.97438 * 25 24 5 27 27 H 1.09001 * 109.46894 * 270.22980 * 1 2 3 28 28 H 1.08994 * 109.47287 * 30.22768 * 1 2 3 29 29 H 1.09003 * 109.46423 * 150.23312 * 1 2 3 30 30 H 1.08002 * 119.92307 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.06486 * 179.79391 * 4 3 2 32 32 H 0.97005 * 119.99746 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47131 * 299.99352 * 9 8 6 34 34 H 1.09001 * 109.47490 * 59.99888 * 9 8 6 35 35 H 1.09001 * 109.47616 * 184.99678 * 10 9 8 36 36 H 1.09005 * 109.47085 * 304.99908 * 10 9 8 37 37 H 1.09001 * 109.47598 * 300.00407 * 12 11 10 38 38 H 1.09000 * 109.47240 * 60.00685 * 12 11 10 39 39 H 1.08996 * 109.47312 * 299.99834 * 13 12 11 40 40 H 1.09001 * 109.47458 * 60.00186 * 13 12 11 41 41 H 1.09005 * 109.47061 * 300.00071 * 14 13 12 42 42 H 1.09000 * 109.47256 * 60.00380 * 14 13 12 43 43 H 0.96995 * 119.99967 * 0.02562 * 15 14 13 44 44 H 0.96996 * 120.00770 * 179.97438 * 19 18 16 45 45 H 1.07998 * 120.08128 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2073 -0.0049 5 6 4.2771 0.0006 0.0004 6 6 5.7556 0.0017 0.0004 7 8 6.3625 1.0549 -0.0047 8 7 6.4304 -1.1649 0.0050 9 6 7.8953 -1.1637 0.0056 10 6 8.4065 -2.6058 0.0118 11 8 8.0294 -3.2502 -1.2066 12 6 8.4599 -4.6093 -1.3027 13 6 8.0038 -5.1953 -2.6405 14 6 8.4642 -6.6508 -2.7432 15 7 8.0270 -7.2121 -4.0238 16 6 8.3258 -8.5105 -4.3400 17 1 8.8835 -9.1209 -3.6452 18 6 7.9121 -9.0422 -5.5536 19 7 7.2320 -8.2986 -6.4003 20 14 8.3203 -10.8133 -5.9853 21 1 7.2316 -11.7028 -5.5073 22 1 8.4567 -10.9450 -7.4581 23 1 9.5974 -11.1998 -5.3335 24 6 3.5774 -1.2067 0.0053 25 6 2.1964 -1.2006 0.0044 26 17 1.3233 -2.7010 0.0099 27 1 -0.3633 0.0041 1.0277 28 1 -0.3633 0.8879 -0.5173 29 1 -0.3632 -0.8921 -0.5102 30 1 1.6522 2.1332 0.0004 31 1 4.1113 2.1449 -0.0083 32 1 5.9461 -2.0054 0.0087 33 1 8.2586 -0.6531 -0.8862 34 1 8.2580 -0.6463 0.8937 35 1 9.4928 -2.6059 0.1017 36 1 7.9720 -3.1417 0.8558 37 1 9.5472 -4.6515 -1.2398 38 1 8.0261 -5.1865 -0.4862 39 1 6.9165 -5.1533 -2.7038 40 1 8.4379 -4.6182 -3.4569 41 1 9.5516 -6.6933 -2.6797 42 1 8.0297 -7.2278 -1.9268 43 1 7.5259 -6.6640 -4.6477 44 1 6.9432 -8.6699 -7.2485 45 1 4.1146 -2.1436 0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485795392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -88.166831 kcal Electronic energy + Delta-G solvation = -25514.751070 eV Core-core repulsion = 21557.008587 eV Total energy + Delta-G solvation = -3957.742484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40105 -39.84899 -39.10737 -37.46194 -37.05466 -35.93968 -34.25084 -33.93919 -32.00653 -31.66905 -30.32615 -28.24909 -26.78607 -24.42633 -24.14119 -23.94365 -22.99916 -22.31398 -21.51725 -19.30727 -19.10364 -17.89236 -17.69484 -17.06718 -16.65652 -16.44625 -16.34995 -16.30193 -16.14379 -15.51482 -15.33766 -15.22961 -15.08964 -15.03170 -14.67244 -14.29610 -13.95459 -13.38192 -13.34231 -13.27287 -13.15581 -12.92654 -12.79957 -12.63306 -12.48235 -12.41140 -12.32294 -12.08532 -12.04485 -11.94339 -11.93655 -11.75541 -11.16993 -10.95250 -10.55782 -10.29002 -10.00581 -9.72984 -9.03554 -7.96852 -5.27119 -0.37544 0.07501 1.04632 1.47025 1.49517 1.58010 1.65287 2.05485 2.49490 2.62491 2.65837 3.36833 3.47016 3.61171 3.81767 3.88968 3.98302 4.04537 4.08081 4.15566 4.19311 4.35763 4.37187 4.41438 4.50920 4.60514 4.61449 4.70618 4.73140 4.75516 4.77193 4.80564 4.86292 4.93048 5.16332 5.21559 5.28882 5.30336 5.32315 5.33318 5.47965 5.62984 6.22078 6.26688 6.37436 7.04464 7.30868 8.06428 8.29031 9.27049 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.002029 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.830862 B =13795.567333 C =15931.145712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.050 4.050 3 C -0.111 4.111 4 C -0.059 4.059 5 C -0.145 4.145 6 C 0.558 3.442 7 O -0.574 6.574 8 N -0.712 5.712 9 C 0.122 3.878 10 C 0.048 3.952 11 O -0.408 6.408 12 C 0.078 3.922 13 C -0.114 4.114 14 C 0.155 3.845 15 N -0.751 5.751 16 C -0.248 4.248 17 H 0.079 0.921 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.978 3.022 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.267 1.267 24 C -0.074 4.074 25 C -0.060 4.060 26 Cl -0.061 7.061 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.170 0.830 31 H 0.143 0.857 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.026 0.974 42 H 0.028 0.972 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 20.779 20.916 31.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 C -0.129 4.129 4 C -0.078 4.078 5 C -0.149 4.149 6 C 0.347 3.653 7 O -0.456 6.456 8 N -0.364 5.364 9 C -0.001 4.001 10 C -0.028 4.028 11 O -0.328 6.328 12 C 0.001 3.999 13 C -0.152 4.152 14 C 0.028 3.972 15 N -0.393 5.393 16 C -0.380 4.380 17 H 0.097 0.903 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.192 1.192 24 C -0.093 4.093 25 C -0.087 4.087 26 Cl -0.032 7.032 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.187 0.813 31 H 0.161 0.839 32 H 0.249 0.751 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.204 0.796 44 H 0.061 0.939 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.324 21.273 20.820 31.506 hybrid contribution -0.002 -1.498 -0.755 1.677 sum -10.326 19.775 20.066 30.005 Atomic orbital electron populations 1.21040 0.88210 1.04653 1.04215 1.20371 0.98402 0.91048 0.95296 1.21324 0.93091 0.98501 1.00001 1.21530 0.94713 0.97653 0.93859 1.19815 0.92254 0.94596 1.08204 1.18400 0.87527 0.83681 0.75739 1.90754 1.70543 1.32229 1.52047 1.45877 1.07971 1.08636 1.73891 1.21506 0.79080 0.96284 1.03222 1.22892 1.01057 0.91694 0.87187 1.87885 1.79269 1.25964 1.39659 1.22315 0.99148 0.81680 0.96741 1.21483 1.01343 0.94875 0.97537 1.20679 0.96791 0.92044 0.87644 1.42615 1.66953 1.11487 1.18282 1.19678 1.28203 0.89482 1.00634 0.90267 1.25667 1.01542 1.02734 0.97207 1.69829 1.44516 1.37635 1.10264 0.85071 0.78160 0.79477 0.76634 1.21207 1.22177 1.19176 1.21279 0.92645 0.98298 0.97122 1.20852 0.92192 0.87920 1.07713 1.98390 1.76209 1.31710 1.96905 0.88998 0.88799 0.90977 0.81293 0.83923 0.75139 0.91893 0.88373 0.89554 0.90566 0.91861 0.91468 0.92169 0.92544 0.95619 0.95403 0.79570 0.93924 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.61 71.24 0.68 -0.38 16 2 C -0.05 -0.66 5.89 -19.78 -0.12 -0.78 16 3 C -0.11 -1.33 9.68 22.23 0.22 -1.11 16 4 C -0.06 -0.96 9.59 22.53 0.22 -0.75 16 5 C -0.15 -2.79 5.87 -20.09 -0.12 -2.91 16 6 C 0.56 12.70 7.77 86.79 0.67 13.37 16 7 O -0.57 -16.67 16.35 -3.90 -0.06 -16.74 16 8 N -0.71 -13.35 5.45 -465.98 -2.54 -15.89 16 9 C 0.12 2.11 6.06 86.38 0.52 2.63 16 10 C 0.05 0.72 6.07 71.98 0.44 1.16 16 11 O -0.41 -9.35 10.29 -148.98 -1.53 -10.88 16 12 C 0.08 1.82 5.94 71.98 0.43 2.25 16 13 C -0.11 -3.70 5.70 30.60 0.17 -3.53 16 14 C 0.15 6.10 6.26 86.38 0.54 6.64 16 15 N -0.75 -39.19 5.60 -343.44 -1.92 -41.11 16 16 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 19 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 20 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C -0.07 -1.28 9.32 22.55 0.21 -1.07 16 25 C -0.06 -0.99 6.31 22.29 0.14 -0.85 16 26 Cl -0.06 -1.03 27.27 -2.72 -0.07 -1.11 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.09 0.47 8.08 -2.39 -0.02 0.45 16 29 H 0.07 0.73 6.88 -2.39 -0.02 0.71 16 30 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.14 2.30 7.65 -2.91 -0.02 2.27 16 32 H 0.41 6.52 6.51 -92.70 -0.60 5.92 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 44 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.14 2.14 6.40 -2.91 -0.02 2.12 16 Total: -1.00 -73.74 395.41 1.19 -72.56 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.30 Total: 27.90 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 5.32 Total: -2.74 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -4.18 Total: -117.38 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -1.60 Total: -27.62 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.11 kcal Total: -73.74 1.19 -72.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485795392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.611 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds