Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 120.00462 * 2 1 4 4 C 1.38219 * 120.01153 * 180.23540 * 3 2 1 5 5 C 1.38272 * 120.02538 * 359.48343 * 4 3 2 6 6 C 1.50692 * 119.99271 * 180.25739 * 5 4 3 7 7 C 1.52998 * 109.47246 * 90.00134 * 6 5 4 8 8 C 1.50700 * 109.47243 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00004 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00109 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00290 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47251 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47166 * 294.99719 * 12 11 10 14 14 C 1.53005 * 109.47301 * 174.99763 * 12 11 10 15 15 O 1.42898 * 109.47027 * 305.00007 * 14 12 11 16 16 N 1.46501 * 109.47630 * 54.99995 * 12 11 10 17 17 C 1.36930 * 120.00469 * 205.00303 * 16 12 11 18 18 H 1.08003 * 119.99931 * 359.97438 * 17 16 12 19 19 C 1.38810 * 120.00598 * 179.97438 * 17 16 12 20 20 N 1.31622 * 119.99524 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00550 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47178 * 89.99830 * 21 19 17 23 23 H 1.48497 * 109.47134 * 210.00313 * 21 19 17 24 24 H 1.48501 * 109.46781 * 329.99777 * 21 19 17 25 25 C 1.38194 * 120.01273 * 0.28256 * 5 4 3 26 26 C 1.38321 * 120.00717 * 179.74274 * 2 1 3 27 27 Cl 1.73598 * 120.01426 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47184 * 270.25947 * 1 2 3 29 29 H 1.09003 * 109.47376 * 30.25498 * 1 2 3 30 30 H 1.08993 * 109.47512 * 150.25768 * 1 2 3 31 31 H 1.08002 * 119.99694 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99072 * 179.76939 * 4 3 2 33 33 H 1.09002 * 109.47167 * 210.00258 * 6 5 4 34 34 H 1.09006 * 109.47428 * 330.00350 * 6 5 4 35 35 H 1.08995 * 109.47426 * 299.99879 * 7 6 5 36 36 H 1.09007 * 109.46868 * 60.00323 * 7 6 5 37 37 H 0.97005 * 119.99998 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.47106 * 299.99973 * 11 10 8 39 39 H 1.08997 * 109.47203 * 59.99714 * 11 10 8 40 40 H 1.09003 * 109.46512 * 65.00110 * 14 12 11 41 41 H 1.09000 * 109.47272 * 184.99504 * 14 12 11 42 42 H 0.96697 * 113.99811 * 179.97438 * 15 14 12 43 43 H 0.96999 * 119.99704 * 24.99714 * 16 12 11 44 44 H 0.97000 * 119.99801 * 179.97438 * 20 19 17 45 45 H 1.07993 * 120.00593 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2725 0.0003 0.0010 6 6 5.7794 0.0013 0.0015 7 6 6.2890 0.0085 1.4441 8 6 7.7960 0.0089 1.4446 9 8 8.4027 0.0045 0.3945 10 7 8.4695 0.0142 2.6120 11 6 9.9345 0.0152 2.6125 12 6 10.4440 0.0209 4.0551 13 1 10.1549 0.9540 4.5389 14 6 11.9689 -0.1038 4.0580 15 8 12.3530 -1.2673 3.3227 16 7 9.8604 -1.1081 4.7837 17 6 9.7313 -1.0510 6.1457 18 1 10.0601 -0.1736 6.6830 19 6 9.1779 -2.1206 6.8361 20 7 8.7768 -3.1896 6.1813 21 14 9.0012 -2.0423 8.6940 22 1 7.6817 -1.4565 9.0415 23 1 9.0988 -3.4123 9.2587 24 1 10.0828 -1.1959 9.2589 25 6 3.5825 -1.1971 0.0058 26 6 2.1988 -1.1978 0.0054 27 17 1.3313 -2.7015 0.0115 28 1 -0.3634 0.0047 1.0277 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6583 2.1325 -0.0004 32 1 4.1202 2.1328 -0.0087 33 1 6.1436 -0.8908 -0.5081 34 1 6.1424 0.8892 -0.5164 35 1 5.9249 0.9005 1.9536 36 1 5.9261 -0.8795 1.9619 37 1 7.9842 0.0174 3.4519 38 1 10.2986 -0.8767 2.1025 39 1 10.2974 0.9033 2.0951 40 1 12.4066 0.7802 3.5941 41 1 12.3246 -0.1890 5.0848 42 1 13.3087 -1.4094 3.2824 43 1 9.5654 -1.8962 4.3013 44 1 8.3904 -3.9372 6.6637 45 1 4.1232 -2.1319 0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486019454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -77.063024 kcal Electronic energy + Delta-G solvation = -26251.727869 eV Core-core repulsion = 22294.466883 eV Total energy + Delta-G solvation = -3957.260987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97587 -39.23068 -37.15884 -36.69938 -34.97665 -34.57195 -33.45320 -31.68705 -31.13480 -30.95961 -28.47592 -27.33198 -25.25496 -23.76528 -23.22675 -23.03976 -20.95790 -20.12745 -19.70630 -17.62445 -17.00830 -16.60779 -16.30893 -16.12539 -15.70915 -15.49888 -15.24929 -14.70575 -14.39039 -14.08660 -14.03649 -13.74362 -13.40426 -13.32126 -13.09058 -12.89586 -12.78195 -12.59811 -12.50405 -12.22905 -11.93192 -11.68597 -11.55469 -11.41596 -11.35692 -10.97944 -10.90022 -10.87455 -10.85310 -10.57331 -10.11867 -9.80976 -9.56298 -9.36372 -9.04499 -8.99761 -8.69490 -8.55390 -7.05521 -5.83226 -3.13658 0.92693 1.02957 1.94680 2.99891 3.31848 3.37535 3.43074 3.45300 3.66708 4.45422 4.50183 4.51218 4.70670 4.86912 4.92010 5.01107 5.02295 5.15556 5.27291 5.31543 5.36322 5.40339 5.42786 5.51629 5.56191 5.57945 5.66889 5.82577 5.83785 5.89462 6.00816 6.01984 6.04775 6.10889 6.14898 6.36946 6.37337 6.50348 6.59898 6.74357 6.94349 7.60512 7.98178 8.19728 8.33744 8.62423 9.46030 10.01319 10.37875 11.38276 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.002410 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.976691 B =11614.787984 C =13268.276582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.108 4.108 4 C -0.108 4.108 5 C -0.071 4.071 6 C -0.063 4.063 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.557 6.557 10 N -0.713 5.713 11 C 0.118 3.882 12 C 0.165 3.835 13 H 0.065 0.935 14 C 0.059 3.941 15 O -0.560 6.560 16 N -0.713 5.713 17 C -0.248 4.248 18 H 0.070 0.930 19 C -0.008 4.008 20 N -0.925 5.925 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.102 4.102 26 C -0.034 4.034 27 Cl -0.071 7.071 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.026 0.974 41 H 0.048 0.952 42 H 0.364 0.636 43 H 0.389 0.611 44 H 0.256 0.744 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 9.380 -12.928 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.071 4.071 6 C -0.101 4.101 7 C -0.176 4.176 8 C 0.296 3.704 9 O -0.436 6.436 10 N -0.364 5.364 11 C -0.006 4.006 12 C 0.054 3.946 13 H 0.083 0.917 14 C -0.022 4.022 15 O -0.363 6.363 16 N -0.355 5.355 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.209 1.209 25 C -0.120 4.120 26 C -0.061 4.061 27 Cl -0.042 7.042 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.208 0.792 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.290 9.209 -13.535 20.470 hybrid contribution 0.276 -0.409 1.615 1.689 sum -12.013 8.800 -11.920 19.075 Atomic orbital electron populations 1.20858 0.90456 1.03294 1.02898 1.19754 0.96661 0.91506 1.00569 1.20976 0.94125 0.96998 1.00544 1.21183 0.94033 0.98009 0.99355 1.19898 0.96113 0.92330 0.98762 1.20333 0.88920 1.04780 0.96047 1.21639 0.92611 1.04961 0.98406 1.20536 0.89862 0.76164 0.83845 1.90662 1.70583 1.50882 1.31496 1.46023 1.07884 1.73651 1.08876 1.21524 0.79213 1.01901 0.97964 1.20592 0.90083 0.93414 0.90497 0.91730 1.23036 0.98552 0.85888 0.94738 1.86571 1.26719 1.46930 1.76111 1.42366 1.72413 1.16469 1.04205 1.19206 1.34579 1.00906 0.83255 0.91230 1.24748 1.01501 0.96391 0.97815 1.69678 1.46693 1.06403 1.34468 0.86224 0.77749 0.76746 0.85598 1.21670 1.21792 1.20852 1.21017 0.91780 0.99099 1.00135 1.20800 0.92377 0.86682 1.06216 1.98361 1.76842 1.32094 1.96887 0.90701 0.91220 0.90919 0.85205 0.85277 0.89877 0.89915 0.88935 0.88498 0.75427 0.90680 0.92263 0.95566 0.93352 0.79169 0.77675 0.93414 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.61 36.01 0.35 -0.52 16 2 C -0.08 -0.80 5.88 -104.59 -0.62 -1.41 16 3 C -0.11 -0.93 9.70 -39.59 -0.38 -1.32 16 4 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 5 C -0.07 -0.74 5.13 -104.63 -0.54 -1.28 16 6 C -0.06 -0.71 4.63 -27.89 -0.13 -0.84 16 7 C -0.14 -1.66 5.68 -27.88 -0.16 -1.82 16 8 C 0.51 8.16 7.83 -10.98 -0.09 8.07 16 9 O -0.56 -10.58 15.98 5.56 0.09 -10.49 16 10 N -0.71 -11.84 5.39 -60.30 -0.32 -12.16 16 11 C 0.12 2.09 5.12 -4.05 -0.02 2.07 16 12 C 0.17 3.10 2.84 -67.93 -0.19 2.91 16 13 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 14 C 0.06 1.02 6.86 37.16 0.25 1.27 16 15 O -0.56 -9.98 12.64 -35.23 -0.45 -10.43 16 16 N -0.71 -16.77 4.51 -53.43 -0.24 -17.01 16 17 C -0.25 -6.46 9.93 -15.06 -0.15 -6.61 16 18 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 21 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.10 -1.12 9.49 -39.55 -0.38 -1.49 16 26 C -0.03 -0.37 6.31 -39.50 -0.25 -0.62 16 27 Cl -0.07 -0.74 27.30 -51.86 -1.42 -2.15 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.07 0.54 6.90 -51.93 -0.36 0.18 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.41 6.81 8.14 -40.82 -0.33 6.48 16 38 H 0.07 1.51 7.39 -51.93 -0.38 1.12 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.36 4.66 9.12 45.56 0.42 5.08 16 43 H 0.39 10.19 7.80 -40.82 -0.32 9.88 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -32.04 394.74 -9.47 -41.51 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -6.00 Total: 17.83 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.78 Total: -3.25 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.16 Total: -55.49 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.36 Total: -20.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.42 Total: -2.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.04 -9.47 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486019454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.558 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds