Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99640 * 2 1 4 4 C 1.52999 * 109.46817 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47180 * 64.99768 * 4 3 2 6 6 C 1.36929 * 120.00104 * 269.99809 * 5 4 3 7 7 H 1.07997 * 120.00087 * 141.63928 * 6 5 4 8 8 C 1.38812 * 120.00066 * 321.63647 * 6 5 4 9 9 N 1.31612 * 120.00186 * 339.43931 * 8 6 5 10 10 Si 1.86802 * 120.00106 * 159.44030 * 8 6 5 11 11 H 1.48504 * 109.46998 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47529 * 119.99987 * 10 8 6 13 13 H 1.48504 * 109.47306 * 240.00231 * 10 8 6 14 14 C 1.46505 * 119.99995 * 90.00192 * 5 4 3 15 15 C 1.52997 * 109.46976 * 264.50258 * 14 5 4 16 16 N 1.46498 * 109.47418 * 179.97438 * 15 14 5 17 17 C 1.34770 * 120.00481 * 180.02562 * 16 15 14 18 18 O 1.21554 * 120.00089 * 359.97438 * 17 16 15 19 19 C 1.47850 * 120.00323 * 180.02562 * 17 16 15 20 20 C 1.39582 * 120.13709 * 353.43045 * 19 17 16 21 21 C 1.38055 * 119.83934 * 180.02562 * 20 19 17 22 22 Cl 1.73601 * 119.94068 * 180.02562 * 21 20 19 23 23 C 1.38491 * 120.11789 * 0.02562 * 21 20 19 24 24 C 1.38310 * 120.27908 * 0.25199 * 23 21 20 25 25 C 1.37990 * 120.16224 * 359.49227 * 24 23 21 26 26 C 1.50696 * 120.06481 * 180.23511 * 25 24 23 27 27 H 1.08999 * 109.47220 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47525 * 300.00285 * 1 2 3 29 29 H 1.08997 * 109.47385 * 60.00037 * 1 2 3 30 30 H 1.09000 * 109.47403 * 60.00283 * 3 2 1 31 31 H 1.09003 * 109.47380 * 299.99654 * 3 2 1 32 32 H 1.09000 * 109.47350 * 304.99439 * 4 3 2 33 33 H 1.09003 * 109.47033 * 184.99999 * 4 3 2 34 34 H 0.96997 * 120.00205 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47076 * 144.49977 * 14 5 4 36 36 H 1.09001 * 109.47085 * 24.50221 * 14 5 4 37 37 H 1.09008 * 109.46997 * 59.99835 * 15 14 5 38 38 H 1.09001 * 109.47183 * 299.99903 * 15 14 5 39 39 H 0.97002 * 119.99538 * 359.97438 * 16 15 14 40 40 H 1.08002 * 120.08043 * 0.04309 * 20 19 17 41 41 H 1.07999 * 119.85999 * 179.97438 * 23 21 20 42 42 H 1.07998 * 119.92019 * 179.74822 * 24 23 21 43 43 H 1.08999 * 109.46961 * 263.65969 * 26 25 24 44 44 H 1.09004 * 109.46907 * 23.65386 * 26 25 24 45 45 H 1.08990 * 109.47349 * 143.65285 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7969 -1.3368 7 1 3.8094 -1.3096 -2.2428 8 6 4.5888 -1.5179 -0.2575 9 7 5.3036 -0.9128 0.6672 10 14 4.2366 -3.3471 -0.1176 11 1 3.4172 -3.7835 -1.2767 12 1 5.5175 -4.0984 -0.1055 13 1 3.4945 -3.6135 1.1408 14 6 4.2863 1.4007 -2.4148 15 6 3.0598 1.4840 -3.3257 16 7 3.3702 2.3207 -4.4875 17 6 2.4331 2.5377 -5.4314 18 8 1.3304 2.0389 -5.3190 19 6 2.7466 3.3816 -6.6042 20 6 3.9616 4.0656 -6.6707 21 6 4.2477 4.8523 -7.7685 22 17 5.7583 5.7036 -7.8543 23 6 3.3319 4.9637 -8.8014 24 6 2.1241 4.2927 -8.7379 25 6 1.8284 3.4990 -7.6485 26 6 0.5140 2.7647 -7.5840 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5684 0.8410 33 1 3.9784 2.1766 0.0889 34 1 5.6471 -1.4166 1.4216 35 1 5.1188 0.9627 -2.9654 36 1 4.5588 2.4015 -2.0798 37 1 2.2273 1.9220 -2.7749 38 1 2.7874 0.4832 -3.6607 39 1 4.2501 2.7191 -4.5770 40 1 4.6762 3.9793 -5.8655 41 1 3.5599 5.5806 -9.6580 42 1 1.4125 4.3869 -9.5447 43 1 -0.1986 3.3460 -6.9990 44 1 0.1265 2.6241 -8.5931 45 1 0.6633 1.7930 -7.1136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486431826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -57.858959 kcal Electronic energy + Delta-G solvation = -27192.354987 eV Core-core repulsion = 23235.926751 eV Total energy + Delta-G solvation = -3956.428236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49008 -39.57801 -38.89522 -37.56338 -37.34463 -35.87131 -33.58624 -33.28489 -32.52689 -30.92526 -29.15510 -27.83648 -27.15950 -25.91592 -24.84044 -23.49812 -22.43564 -22.20343 -21.49829 -19.08384 -18.59380 -17.58466 -17.22384 -16.87435 -16.72594 -16.66053 -16.35642 -16.16540 -16.05502 -15.63761 -15.42040 -15.09859 -14.69359 -14.65834 -14.52245 -14.15648 -13.79153 -13.62670 -13.42145 -13.24290 -13.00442 -12.91445 -12.74367 -12.47816 -12.44536 -12.37639 -12.33257 -12.19878 -11.98206 -11.93444 -11.71859 -11.53914 -10.78101 -10.46816 -10.38605 -10.23967 -10.00100 -9.59444 -8.54164 -7.78424 -5.39429 -0.31053 0.08811 1.07220 1.45161 1.50041 1.58594 1.74225 2.08675 2.57599 2.63906 3.18817 3.34672 3.51500 3.67640 3.77212 3.84326 4.06466 4.20241 4.22610 4.30011 4.40762 4.43100 4.50961 4.56629 4.63775 4.70260 4.71393 4.77760 4.81103 4.82127 4.90133 4.95522 4.96250 5.09684 5.10244 5.16188 5.25834 5.45512 5.50849 5.68516 5.71724 5.79712 6.46221 6.49943 6.64846 7.15878 7.23137 7.88981 8.38599 9.19321 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002651 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.946625 B =10558.562948 C =11422.076957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.141 3.859 5 N -0.586 5.586 6 C -0.244 4.244 7 H 0.042 0.958 8 C -0.021 4.021 9 N -0.915 5.915 10 Si 0.947 3.053 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.293 1.293 14 C 0.141 3.859 15 C 0.121 3.879 16 N -0.709 5.709 17 C 0.549 3.451 18 O -0.566 6.566 19 C -0.142 4.142 20 C -0.075 4.075 21 C -0.058 4.058 22 Cl -0.062 7.062 23 C -0.074 4.074 24 C -0.111 4.111 25 C -0.032 4.032 26 C -0.119 4.119 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.250 0.750 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.410 0.590 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.170 0.830 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 15.579 -17.822 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.015 3.985 5 N -0.306 5.306 6 C -0.374 4.374 7 H 0.060 0.940 8 C -0.218 4.218 9 N -0.560 5.560 10 Si 0.777 3.223 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.220 1.220 14 C 0.015 3.985 15 C -0.005 4.005 16 N -0.361 5.361 17 C 0.338 3.662 18 O -0.447 6.447 19 C -0.145 4.145 20 C -0.094 4.094 21 C -0.084 4.084 22 Cl -0.033 7.033 23 C -0.093 4.093 24 C -0.129 4.129 25 C -0.033 4.033 26 C -0.175 4.175 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.248 0.752 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.187 0.813 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.281 15.048 -17.558 23.719 hybrid contribution 0.151 -0.770 0.603 0.990 sum -5.129 14.278 -16.954 22.751 Atomic orbital electron populations 1.22802 0.81769 1.02610 0.99831 1.88130 1.19401 1.28767 1.95156 1.23343 0.97086 0.83988 0.98301 1.21029 0.89371 0.96623 0.91464 1.43667 1.76067 1.02428 1.08429 1.18892 1.35018 0.83117 1.00375 0.93997 1.25556 0.96652 1.00593 0.99021 1.70060 1.35553 1.36547 1.13831 0.85548 0.77053 0.82421 0.77323 1.20148 1.21702 1.21975 1.21038 0.93435 0.95324 0.88751 1.21918 1.00037 0.92864 0.85714 1.45871 1.16336 1.51347 1.22562 1.18600 0.84226 0.80500 0.82899 1.90724 1.23608 1.52548 1.77846 1.19681 0.96570 1.02138 0.96108 1.21288 0.95646 0.94619 0.97880 1.20879 0.90137 0.99963 0.97443 1.98391 1.30632 1.75984 1.98283 1.21597 0.92025 0.97957 0.97706 1.21339 0.97346 0.95961 0.98208 1.20373 0.95641 0.94799 0.92486 1.21022 0.92799 1.00683 1.02973 0.89895 0.93266 0.94564 0.93374 0.94651 0.91353 0.92172 0.94115 0.93302 0.91508 0.93268 0.94613 0.75228 0.83510 0.81721 0.81251 0.91031 0.89513 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -17.64 10.18 -148.98 -1.52 -19.16 16 3 C 0.05 2.06 6.28 71.98 0.45 2.51 16 4 C 0.14 6.42 5.76 86.38 0.50 6.91 16 5 N -0.59 -28.08 2.41 -702.01 -1.69 -29.77 16 6 C -0.24 -13.35 8.95 84.03 0.75 -12.60 16 7 H 0.04 2.39 7.91 -2.91 -0.02 2.37 16 8 C -0.02 -1.17 4.97 84.86 0.42 -0.75 16 9 N -0.92 -52.98 11.47 21.65 0.25 -52.73 16 10 Si 0.95 46.46 29.60 68.60 2.03 48.49 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 13 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.14 5.43 5.83 86.38 0.50 5.93 16 15 C 0.12 4.41 5.97 86.38 0.52 4.92 16 16 N -0.71 -20.44 5.50 -465.97 -2.57 -23.00 16 17 C 0.55 16.67 7.70 86.79 0.67 17.34 16 18 O -0.57 -21.04 13.35 -3.88 -0.05 -21.09 16 19 C -0.14 -3.32 5.87 -20.09 -0.12 -3.44 16 20 C -0.07 -1.43 9.30 22.55 0.21 -1.22 16 21 C -0.06 -0.94 6.31 22.29 0.14 -0.80 16 22 Cl -0.06 -0.96 28.95 -2.72 -0.08 -1.04 16 23 C -0.07 -0.95 9.82 22.35 0.22 -0.73 16 24 C -0.11 -1.50 9.66 22.23 0.21 -1.29 16 25 C -0.03 -0.65 5.91 -19.61 -0.12 -0.76 16 26 C -0.12 -2.50 8.72 71.23 0.62 -1.88 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.36 6.49 -2.39 -0.02 1.34 16 32 H 0.07 3.66 5.54 -2.39 -0.01 3.65 16 33 H 0.06 2.43 7.86 -2.39 -0.02 2.41 16 34 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 36 H 0.07 2.22 7.83 -2.39 -0.02 2.20 16 37 H 0.05 1.91 6.49 -2.38 -0.02 1.89 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 9.22 6.55 -92.71 -0.61 8.61 16 40 H 0.15 2.39 6.46 -2.91 -0.02 2.37 16 41 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.09 1.27 8.04 -2.39 -0.02 1.25 16 45 H 0.07 1.91 5.86 -2.39 -0.01 1.90 16 Total: -1.00 -69.40 385.26 3.01 -66.39 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.40 Total: 15.62 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.23 Total: 16.28 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -4.01 Total: -105.50 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.57 Total: -40.25 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -69.40 3.01 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486431826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.534 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds