Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.30999 * 120.00207 * 125.00304 * 15 14 13 17 17 C 1.50693 * 120.00369 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.47435 * 124.99562 * 17 16 15 19 19 C 1.34777 * 119.99870 * 180.02562 * 18 17 16 20 20 O 1.21607 * 120.00147 * 359.97438 * 19 18 17 21 21 C 1.47100 * 119.99351 * 180.02562 * 19 18 17 22 22 C 1.32092 * 118.87388 * 179.72762 * 21 19 18 23 23 C 1.50263 * 122.57910 * 180.14294 * 22 21 19 24 24 O 1.42898 * 110.14590 * 344.80789 * 23 22 21 25 25 C 1.43267 * 113.09721 * 50.32877 * 24 23 22 26 26 C 1.50422 * 118.88057 * 359.97438 * 21 19 18 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 1.08001 * 119.99875 * 304.98958 * 15 14 13 34 34 H 1.08008 * 119.99728 * 359.97438 * 16 15 14 35 35 H 1.08998 * 109.47390 * 244.99906 * 17 16 15 36 36 H 1.09003 * 109.47336 * 4.99504 * 17 16 15 37 37 H 0.97005 * 119.99636 * 359.97438 * 18 17 16 38 38 H 1.07997 * 118.70830 * 0.37372 * 22 21 19 39 39 H 1.08995 * 109.50575 * 224.49554 * 23 22 21 40 40 H 1.09003 * 109.07896 * 104.84822 * 23 22 21 41 41 H 1.09001 * 109.63530 * 171.47524 * 25 24 23 42 42 H 1.08994 * 109.64127 * 50.85770 * 25 24 23 43 43 H 1.08997 * 109.45303 * 283.35336 * 26 21 19 44 44 H 1.08992 * 109.45022 * 43.28906 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.4851 -8.6836 -0.0086 16 6 3.5693 -9.6071 0.9167 17 6 4.7234 -10.5761 0.9115 18 7 5.4025 -10.5338 2.2089 19 6 6.4720 -11.3219 2.4357 20 8 6.8731 -12.0685 1.5636 21 6 7.1534 -11.2798 3.7387 22 6 8.1961 -12.0656 3.9389 23 6 8.9515 -12.0924 5.2376 24 8 8.6154 -10.9491 6.0262 25 6 7.2024 -10.7559 6.1623 26 6 6.6356 -10.3474 4.7995 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 4.2430 -8.6165 -0.7751 34 1 2.8114 -9.6741 1.6833 35 1 4.3508 -11.5840 0.7291 36 1 5.4257 -10.3005 0.1247 37 1 5.0827 -9.9380 2.9045 38 1 8.5206 -12.7115 3.1365 39 1 10.0226 -12.0900 5.0357 40 1 8.6888 -12.9982 5.7840 41 1 7.0088 -9.9681 6.8903 42 1 6.7355 -11.6846 6.4901 43 1 6.9439 -9.3278 4.5686 44 1 5.5474 -10.3995 4.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501697692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -90.854315 kcal Electronic energy + Delta-G solvation = -24912.234539 eV Core-core repulsion = 20956.419223 eV Total energy + Delta-G solvation = -3955.815315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72235 -39.31182 -39.16879 -36.75126 -35.01208 -34.32875 -32.89218 -32.44470 -31.64827 -29.83508 -27.97096 -26.42882 -25.50368 -24.55767 -23.73273 -21.74602 -20.73191 -20.16256 -18.91506 -18.15600 -17.89514 -17.06898 -16.47588 -16.26257 -16.17970 -15.90494 -15.71400 -15.43119 -15.24634 -14.81938 -14.32867 -14.32302 -14.12369 -13.97926 -13.79847 -13.30685 -13.15726 -13.07237 -12.84326 -12.71216 -12.51387 -12.15657 -11.82842 -11.58679 -11.42425 -11.06482 -11.05190 -10.78902 -10.74969 -10.21837 -9.98424 -9.84336 -9.73997 -9.50678 -9.34663 -9.08120 -8.93261 -8.26741 -6.52445 -6.23292 -3.94286 0.78563 1.44051 2.75799 2.81897 3.03820 3.06187 3.22329 3.26802 3.29445 3.31596 3.73834 4.04055 4.09698 4.18778 4.21377 4.24571 4.56268 4.59234 4.64010 4.75965 4.89153 4.92671 4.99683 5.04831 5.11059 5.11800 5.18222 5.24468 5.30165 5.38526 5.52684 5.68584 5.72817 5.83993 5.85590 5.89676 6.10567 6.11296 6.20890 6.46586 6.54410 7.00594 7.57509 7.64092 7.72118 8.33251 8.54892 9.21894 10.84064 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.001586 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.575037 B =17646.414816 C =19111.104612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.147 3.853 15 C -0.138 4.138 16 C -0.167 4.167 17 C 0.149 3.851 18 N -0.722 5.722 19 C 0.552 3.448 20 O -0.543 6.543 21 C -0.170 4.170 22 C -0.110 4.110 23 C 0.083 3.917 24 O -0.376 6.376 25 C 0.059 3.941 26 C -0.122 4.122 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.404 0.596 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.120 -26.153 9.821 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.392 5.392 14 C 0.023 3.977 15 C -0.158 4.158 16 C -0.187 4.187 17 C 0.026 3.974 18 N -0.373 5.373 19 C 0.340 3.660 20 O -0.421 6.421 21 C -0.173 4.173 22 C -0.130 4.130 23 C 0.007 3.993 24 O -0.294 6.294 25 C -0.018 4.018 26 C -0.159 4.159 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.239 0.761 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.326 -26.781 9.259 31.752 hybrid contribution 1.979 1.420 -0.003 2.436 sum 16.306 -25.361 9.256 31.539 Atomic orbital electron populations 1.70005 1.05950 1.27595 1.46718 1.24993 0.95032 0.99026 0.94497 0.86222 0.79239 0.81219 0.78809 1.19938 1.20795 1.19928 1.22828 0.94884 0.91649 1.59150 0.90955 1.85396 1.04871 0.96321 1.96734 1.23533 1.06625 0.95255 1.04983 1.20347 0.86499 0.86285 0.75084 1.90709 1.15366 1.85570 1.47470 1.45979 1.10080 1.05019 1.78086 1.20298 0.94110 0.80277 1.02979 1.23083 0.98802 0.95258 0.98631 1.22909 0.98674 0.97030 1.00044 1.20365 0.92351 0.99284 0.85363 1.45917 1.31199 1.43411 1.16816 1.18423 0.79983 0.79870 0.87678 1.90800 1.65414 1.39888 1.46045 1.20845 0.99270 1.01983 0.95178 1.23762 0.93686 0.96218 0.99321 1.21628 1.00097 0.89462 0.88119 1.88168 1.23047 1.47061 1.71141 1.22677 0.81400 1.01685 0.95988 1.21106 1.01211 0.99464 0.94098 0.92107 0.89185 0.89161 0.76682 0.91013 0.90428 0.86238 0.86085 0.90333 0.90745 0.76070 0.84577 0.86761 0.90731 0.87749 0.92356 0.89087 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.58 7.85 -10.98 -0.09 9.50 16 12 O -0.52 -11.47 15.86 5.55 0.09 -11.38 16 13 N -0.74 -9.16 5.55 -61.47 -0.34 -9.50 16 14 C 0.15 1.53 6.11 -5.19 -0.03 1.50 16 15 C -0.14 -1.00 9.24 -36.03 -0.33 -1.33 16 16 C -0.17 -1.05 9.24 -36.03 -0.33 -1.39 16 17 C 0.15 1.04 6.11 -5.19 -0.03 1.01 16 18 N -0.72 -4.96 5.49 -62.67 -0.34 -5.30 16 19 C 0.55 5.06 7.73 -12.67 -0.10 4.96 16 20 O -0.54 -6.93 16.06 5.27 0.08 -6.84 16 21 C -0.17 -1.21 5.86 -103.09 -0.60 -1.81 16 22 C -0.11 -0.73 9.58 -36.44 -0.35 -1.08 16 23 C 0.08 0.41 7.04 35.79 0.25 0.66 16 24 O -0.38 -2.60 10.83 -35.23 -0.38 -2.98 16 25 C 0.06 0.28 6.88 37.23 0.26 0.54 16 26 C -0.12 -0.59 5.29 -27.95 -0.15 -0.73 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 30 H 0.40 3.84 8.46 -40.82 -0.35 3.49 16 31 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.12 0.76 7.84 -52.49 -0.41 0.35 16 34 H 0.12 0.69 7.84 -52.48 -0.41 0.28 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 37 H 0.40 1.92 6.77 -40.82 -0.28 1.65 16 38 H 0.14 0.96 7.29 -52.49 -0.38 0.58 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.22 8.09 -51.93 -0.42 -0.20 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.27 7.31 -51.93 -0.38 -0.11 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -37.37 390.98 -8.95 -46.32 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.36 Total: 0.49 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.09 Total: -3.84 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.05 Total: -40.04 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.21 Total: -21.21 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.37 -8.95 -46.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.533 kcal (2) G-P(sol) polarization free energy of solvation -37.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds