Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99908 * 2 1 4 4 H 1.48509 * 109.47043 * 269.99865 * 3 2 1 5 5 H 1.48493 * 109.47376 * 29.99980 * 3 2 1 6 6 H 1.48505 * 109.47203 * 150.00351 * 3 2 1 7 7 C 1.38804 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99516 * 359.97438 * 7 2 1 9 9 S 1.76194 * 120.00138 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00303 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47347 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00267 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00449 * 179.97438 * 13 11 10 15 15 C 1.50693 * 109.47605 * 180.02562 * 14 13 11 16 16 C 1.30994 * 120.00198 * 125.00174 * 15 14 13 17 17 C 1.50701 * 120.00400 * 180.02562 * 16 15 14 18 18 N 1.46494 * 109.47347 * 125.00025 * 17 16 15 19 19 C 1.34779 * 119.99906 * 179.97438 * 18 17 16 20 20 O 1.21739 * 120.00272 * 0.02562 * 19 18 17 21 21 C 1.41792 * 120.00078 * 179.97438 * 19 18 17 22 22 C 1.33462 * 118.78807 * 180.02562 * 21 19 18 23 23 O 1.34351 * 123.07632 * 180.41796 * 22 21 19 24 24 C 1.45358 * 117.48177 * 343.67174 * 23 22 21 25 25 C 1.53424 * 108.26672 * 47.46374 * 24 23 22 26 26 C 1.50419 * 118.78463 * 0.02562 * 21 19 18 27 27 H 0.96999 * 119.99734 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46739 * 59.99794 * 10 9 7 29 29 H 1.09005 * 109.47153 * 300.00423 * 10 9 7 30 30 H 0.97003 * 119.99816 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.46304 * 60.00506 * 14 13 11 32 32 H 1.09000 * 109.47048 * 300.00903 * 14 13 11 33 33 H 1.08004 * 120.00337 * 305.00806 * 15 14 13 34 34 H 1.07997 * 119.99843 * 0.02562 * 16 15 14 35 35 H 1.08998 * 109.46994 * 4.99592 * 17 16 15 36 36 H 1.09005 * 109.47145 * 245.00186 * 17 16 15 37 37 H 0.96997 * 120.00284 * 359.97438 * 18 17 16 38 38 H 1.08001 * 118.45950 * 0.39729 * 22 21 19 39 39 H 1.08999 * 109.70305 * 167.17436 * 24 23 22 40 40 H 1.08997 * 109.70640 * 287.74544 * 24 23 22 41 41 H 1.09005 * 109.68281 * 177.60423 * 25 24 23 42 42 H 1.09002 * 109.71053 * 57.00929 * 25 24 23 43 43 H 1.09002 * 109.45533 * 282.35539 * 26 21 19 44 44 H 1.09000 * 109.45931 * 42.31772 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2325 -0.0021 12 8 6.3441 -2.2963 -0.0025 13 7 6.0458 -4.4946 -0.0016 14 6 7.4908 -4.7358 -0.0033 15 6 7.7525 -6.2198 -0.0029 16 6 8.5059 -6.7523 -0.9329 17 6 8.7672 -8.2364 -0.9329 18 7 8.3853 -8.7995 -2.2302 19 6 8.5324 -10.1191 -2.4617 20 8 8.9821 -10.8432 -1.5925 21 6 8.1623 -10.6643 -3.7172 22 6 8.3177 -11.9742 -3.9201 23 8 8.0033 -12.5792 -5.0778 24 6 7.1495 -11.8536 -6.0037 25 6 7.6936 -10.4256 -6.1411 26 6 7.6089 -9.7449 -4.7713 27 1 -0.4850 0.8401 0.0004 28 1 3.6433 -3.4317 -0.8907 29 1 3.6440 -3.4314 0.8893 30 1 5.4291 -5.2434 -0.0009 31 1 7.9347 -4.2880 0.8858 32 1 7.9325 -4.2894 -0.8942 33 1 7.3188 -6.8445 0.7640 34 1 8.9398 -6.1276 -1.6996 35 1 8.1805 -8.7086 -0.1449 36 1 9.8271 -8.4188 -0.7555 37 1 8.0266 -8.2227 -2.9227 38 1 8.7151 -12.5760 -3.1161 39 1 7.1596 -12.3462 -6.9759 40 1 6.1307 -11.8235 -5.6176 41 1 7.0942 -9.8724 -6.8643 42 1 8.7317 -10.4580 -6.4718 43 1 6.5678 -9.5162 -4.5434 44 1 8.1881 -8.8216 -4.7882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501698760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -87.101033 kcal Electronic energy + Delta-G solvation = -25018.736848 eV Core-core repulsion = 21063.084287 eV Total energy + Delta-G solvation = -3955.652561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11629 -39.59190 -39.32753 -36.72297 -35.11880 -34.64389 -32.87339 -32.45964 -32.11170 -29.90406 -27.77591 -26.35099 -25.65579 -24.99307 -23.53478 -21.72901 -20.78561 -20.23114 -19.26323 -18.42963 -17.92717 -17.12538 -16.49588 -16.44432 -16.13996 -15.86221 -15.69969 -15.34328 -15.22983 -14.97487 -14.65769 -14.22089 -14.09290 -13.92201 -13.85835 -13.51691 -13.35716 -13.18335 -12.83505 -12.82203 -12.62619 -11.95251 -11.93751 -11.60244 -11.53407 -11.28922 -11.26678 -11.02829 -10.64097 -10.38702 -10.01390 -9.85666 -9.55640 -9.39981 -9.05006 -9.00423 -8.97113 -8.52895 -6.94542 -6.31049 -4.03075 0.92353 1.46125 2.61899 2.77441 2.92215 2.97798 3.12226 3.30537 3.35964 3.48779 3.67281 4.02440 4.09459 4.22694 4.26334 4.31128 4.54969 4.58001 4.62385 4.70145 4.78507 4.84605 4.96778 5.01528 5.07990 5.12839 5.20572 5.25233 5.32679 5.38395 5.42843 5.47987 5.62471 5.68029 5.73141 5.97701 5.98105 6.12428 6.22135 6.47443 6.64191 7.16036 7.54921 7.89611 7.91955 8.39416 8.43083 9.15055 10.78122 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.001591 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.114361 B =17594.149918 C =18786.393555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.734 5.734 14 C 0.148 3.852 15 C -0.143 4.143 16 C -0.163 4.163 17 C 0.150 3.850 18 N -0.727 5.727 19 C 0.573 3.427 20 O -0.561 6.561 21 C -0.322 4.322 22 C 0.164 3.836 23 O -0.310 6.310 24 C 0.051 3.949 25 C -0.158 4.158 26 C -0.074 4.074 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.401 0.599 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.180 0.820 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.367 -24.876 -10.724 32.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.389 5.389 14 C 0.024 3.976 15 C -0.162 4.162 16 C -0.183 4.183 17 C 0.027 3.973 18 N -0.379 5.379 19 C 0.365 3.635 20 O -0.443 6.443 21 C -0.327 4.327 22 C 0.096 3.904 23 O -0.220 6.220 24 C -0.023 4.023 25 C -0.195 4.195 26 C -0.112 4.112 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.235 0.765 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.197 0.803 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.854 -23.890 -10.194 32.095 hybrid contribution -1.367 -0.065 -0.299 1.401 sum 17.487 -23.954 -10.493 31.460 Atomic orbital electron populations 1.69938 1.05912 1.27779 1.48009 1.24718 0.94460 0.98979 0.93168 0.86732 0.81896 0.83266 0.79928 1.19211 1.19921 1.15928 1.22315 0.88249 0.97550 1.58851 0.89372 1.84793 1.09313 1.00008 1.97433 1.23278 0.93884 1.04431 1.05862 1.20310 0.90644 0.82199 0.75206 1.90705 1.58769 1.42190 1.47718 1.45940 1.07075 1.08125 1.77764 1.20302 0.82179 0.92148 1.02949 1.23051 0.98082 0.96240 0.98832 1.22939 1.00057 0.95541 0.99735 1.20312 1.01195 0.90087 0.85708 1.45890 1.66581 1.08727 1.16693 1.16574 0.77767 0.81910 0.87261 1.90821 1.47016 1.59375 1.47069 1.20005 1.18689 0.95498 0.98487 1.23019 0.88091 0.92845 0.86437 1.86292 1.63937 1.44853 1.26964 1.23593 0.93135 0.92546 0.92988 1.22182 1.03228 0.96000 0.98092 1.20274 1.01382 0.97469 0.92035 0.91927 0.88479 0.88388 0.76518 0.90426 0.91030 0.86197 0.86218 0.90879 0.90482 0.76286 0.80285 0.87153 0.90580 0.89229 0.90249 0.90513 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.60 27.74 -169.99 -4.71 16.89 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 11 C 0.53 9.07 7.85 -10.99 -0.09 8.99 16 12 O -0.52 -10.93 15.86 5.56 0.09 -10.84 16 13 N -0.73 -8.69 5.55 -61.48 -0.34 -9.03 16 14 C 0.15 1.48 6.11 -5.20 -0.03 1.45 16 15 C -0.14 -1.01 9.24 -36.03 -0.33 -1.35 16 16 C -0.16 -1.04 9.24 -36.02 -0.33 -1.37 16 17 C 0.15 1.08 6.11 -5.20 -0.03 1.05 16 18 N -0.73 -5.24 5.46 -64.36 -0.35 -5.59 16 19 C 0.57 5.36 7.53 -14.90 -0.11 5.25 16 20 O -0.56 -7.20 15.92 5.15 0.08 -7.12 16 21 C -0.32 -2.32 5.70 -105.07 -0.60 -2.92 16 22 C 0.16 1.17 10.47 29.06 0.30 1.47 16 23 O -0.31 -2.01 10.48 -14.89 -0.16 -2.17 16 24 C 0.05 0.19 7.15 37.38 0.27 0.46 16 25 C -0.16 -0.55 6.23 -26.41 -0.16 -0.71 16 26 C -0.07 -0.35 5.09 -27.92 -0.14 -0.49 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 29 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 30 H 0.40 3.65 8.46 -40.82 -0.35 3.30 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 33 H 0.12 0.76 7.84 -52.48 -0.41 0.35 16 34 H 0.12 0.69 7.84 -52.49 -0.41 0.28 16 35 H 0.07 0.58 7.79 -51.93 -0.40 0.17 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.40 2.10 6.57 -40.82 -0.27 1.83 16 38 H 0.18 1.27 7.21 -52.49 -0.38 0.89 16 39 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.31 7.15 -51.93 -0.37 -0.06 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -36.59 387.15 -7.98 -44.57 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.38 Total: 0.75 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.82 Total: -2.19 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.08 Total: -40.19 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.01 Total: -20.13 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.59 -7.98 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501698760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.533 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds