Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00360 * 3 2 1 5 5 H 1.48504 * 109.47138 * 30.00311 * 3 2 1 6 6 H 1.48507 * 109.47178 * 150.00368 * 3 2 1 7 7 C 1.38803 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00363 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99697 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99603 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46438 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00376 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99383 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99828 * 180.27296 * 13 11 10 15 15 C 1.53001 * 109.47069 * 185.56626 * 14 13 11 16 16 N 1.46501 * 115.54961 * 273.18140 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.73036 * 16 15 14 18 18 O 1.21615 * 120.00316 * 354.97160 * 17 16 15 19 19 C 1.47099 * 119.99841 * 174.97617 * 17 16 15 20 20 C 1.32092 * 118.87929 * 179.97438 * 19 17 16 21 21 C 1.50269 * 122.57978 * 180.36662 * 20 19 17 22 22 O 1.42893 * 110.09340 * 344.36293 * 21 20 19 23 23 C 1.43268 * 113.10454 * 50.52271 * 22 21 20 24 24 C 1.50423 * 118.87739 * 359.72993 * 19 17 16 25 25 C 1.53002 * 117.49672 * 127.51467 * 15 14 13 26 26 C 1.53000 * 117.49854 * 58.85382 * 15 14 13 27 27 H 0.97001 * 119.99959 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46899 * 60.00536 * 10 9 7 29 29 H 1.08993 * 109.47236 * 299.99440 * 10 9 7 30 30 H 0.96997 * 120.00510 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47235 * 305.56867 * 14 13 11 32 32 H 1.08999 * 109.46840 * 65.56631 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.72564 * 16 15 14 34 34 H 1.07993 * 118.70553 * 0.39156 * 20 19 17 35 35 H 1.09001 * 109.36254 * 104.54534 * 21 20 19 36 36 H 1.08991 * 109.36955 * 224.16628 * 21 20 19 37 37 H 1.08997 * 109.63649 * 50.86067 * 23 22 21 38 38 H 1.08999 * 109.63743 * 171.26590 * 23 22 21 39 39 H 1.08994 * 109.45661 * 283.37709 * 24 19 17 40 40 H 1.08996 * 109.45149 * 43.31455 * 24 19 17 41 41 H 1.08997 * 117.49778 * 359.97438 * 25 15 14 42 42 H 1.09000 * 117.49809 * 145.02240 * 25 15 14 43 43 H 1.09002 * 117.49714 * 214.97440 * 26 15 14 44 44 H 1.08996 * 117.49970 * 359.97287 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8440 -6.3431 -0.0033 14 6 2.3303 -7.7151 -0.0089 15 6 3.4956 -8.6967 0.1303 16 7 4.1467 -9.0864 -1.1228 17 6 3.4644 -9.7936 -2.0452 18 8 2.3399 -10.1870 -1.8003 19 6 4.0798 -10.0899 -3.3479 20 6 3.3914 -10.7852 -4.2353 21 6 3.9417 -11.1417 -5.5874 22 8 5.0883 -10.3398 -5.8777 23 6 6.0576 -10.3421 -4.8228 24 6 5.4695 -9.5860 -3.6263 25 6 3.4036 -9.7502 1.2360 26 6 4.3758 -8.5761 1.3760 27 1 -0.4850 0.8401 0.0004 28 1 3.1250 -3.7318 0.8875 29 1 3.1237 -3.7310 -0.8925 30 1 3.8008 -6.1836 -0.0043 31 1 1.6412 -7.8485 0.8251 32 1 1.8068 -7.9032 -0.9463 33 1 5.0688 -8.8353 -1.2888 34 1 2.3938 -11.1099 -3.9791 35 1 4.2251 -12.1942 -5.5963 36 1 3.1781 -10.9685 -6.3456 37 1 6.2847 -11.3690 -4.5362 38 1 6.9677 -9.8464 -5.1605 39 1 5.4312 -8.5199 -3.8498 40 1 6.0975 -9.7507 -2.7508 41 1 2.5130 -9.7438 1.8644 42 1 3.8279 -10.7331 1.0312 43 1 5.4392 -8.7872 1.2632 44 1 4.1249 -7.7973 2.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505954119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -74.875078 kcal Electronic energy + Delta-G solvation = -26444.149173 eV Core-core repulsion = 22489.026770 eV Total energy + Delta-G solvation = -3955.122404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.81345 -39.63880 -38.88458 -37.63352 -34.38010 -33.89036 -33.01915 -32.42232 -31.49160 -29.74710 -26.88342 -26.29156 -25.41057 -24.39335 -23.13896 -22.39562 -20.29086 -20.13646 -18.96424 -18.07437 -17.88494 -17.05060 -16.57814 -16.25557 -15.97203 -15.78670 -15.59502 -15.04043 -15.01052 -14.79892 -14.57717 -14.27437 -13.97738 -13.89996 -13.24379 -13.19771 -13.08079 -12.98104 -12.67699 -12.50466 -12.07723 -11.92126 -11.77547 -11.35986 -11.24956 -11.06001 -11.01998 -10.80777 -10.75014 -10.52267 -9.94627 -9.81830 -9.62551 -9.51406 -9.23911 -9.06475 -8.86537 -8.22263 -6.49100 -6.20884 -3.91441 0.91021 2.60008 2.88045 2.93677 3.12185 3.22553 3.23314 3.29748 3.35399 3.42252 3.80254 4.08678 4.17389 4.20901 4.24402 4.32664 4.49191 4.56596 4.66024 4.72523 4.84009 4.96532 5.08176 5.12205 5.14129 5.17519 5.22482 5.27724 5.38003 5.49256 5.53899 5.65703 5.72474 5.80303 5.88232 5.90161 5.98302 6.13644 6.20981 6.54818 6.59533 7.11256 7.59946 7.71622 7.88332 8.35734 8.63106 9.24206 10.86542 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.002234 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.539120 B =12530.158880 C =13592.714546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.530 3.470 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.155 3.845 15 C 0.085 3.915 16 N -0.696 5.696 17 C 0.556 3.444 18 O -0.527 6.527 19 C -0.170 4.170 20 C -0.109 4.109 21 C 0.084 3.916 22 O -0.376 6.376 23 C 0.060 3.940 24 C -0.120 4.120 25 C -0.156 4.156 26 C -0.166 4.166 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.396 0.604 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.402 0.598 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.808 -25.285 -5.058 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.391 5.391 14 C 0.030 3.970 15 C -0.003 4.003 16 N -0.348 5.348 17 C 0.344 3.656 18 O -0.403 6.403 19 C -0.173 4.173 20 C -0.128 4.128 21 C 0.007 3.993 22 O -0.294 6.294 23 C -0.017 4.017 24 C -0.157 4.157 25 C -0.195 4.195 26 C -0.203 4.203 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.238 0.762 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.827 -25.671 -5.058 29.594 hybrid contribution 2.840 1.346 0.212 3.149 sum 16.667 -24.326 -4.846 29.883 Atomic orbital electron populations 1.70019 1.05954 1.27450 1.46829 1.24998 0.95031 0.99035 0.94567 0.86166 0.79387 0.81582 0.78340 1.20276 1.20750 1.19714 1.22862 0.94882 0.91663 1.58953 0.90952 1.85439 1.04908 0.96289 1.96704 1.23519 1.06550 0.95351 1.04834 1.20323 0.86539 0.86232 0.75256 1.90714 1.15363 1.85562 1.47316 1.46005 1.09841 1.05214 1.78070 1.20895 0.93079 0.79320 1.03667 1.20802 0.98015 1.00822 0.80666 1.45257 1.15977 1.56400 1.17127 1.18414 0.85563 0.77591 0.84034 1.90825 1.18693 1.51455 1.79364 1.20829 0.97800 1.04035 0.94670 1.23765 1.00361 0.93984 0.94732 1.21628 0.88519 0.95029 0.94084 1.88169 1.30019 1.70183 1.41025 1.22685 0.91864 0.99865 0.87281 1.21110 0.92952 1.01968 0.99651 1.23358 1.01842 0.94432 0.99879 1.23373 0.97374 1.01850 0.97740 0.92178 0.89245 0.89314 0.77010 0.90102 0.90642 0.76194 0.84470 0.90728 0.86736 0.92452 0.87924 0.89031 0.89844 0.87496 0.88231 0.87967 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 10.14 7.85 -10.98 -0.09 10.06 16 12 O -0.52 -12.17 15.85 5.56 0.09 -12.08 16 13 N -0.74 -10.07 5.43 -60.29 -0.33 -10.40 16 14 C 0.16 2.06 5.66 -4.04 -0.02 2.04 16 15 C 0.08 0.80 1.73 -131.82 -0.23 0.57 16 16 N -0.70 -5.84 5.40 -48.77 -0.26 -6.10 16 17 C 0.56 6.05 7.41 -12.67 -0.09 5.95 16 18 O -0.53 -7.75 15.27 5.26 0.08 -7.67 16 19 C -0.17 -1.46 5.86 -103.09 -0.60 -2.07 16 20 C -0.11 -0.90 9.58 -36.44 -0.35 -1.25 16 21 C 0.08 0.53 7.04 35.80 0.25 0.78 16 22 O -0.38 -3.02 10.83 -35.23 -0.38 -3.41 16 23 C 0.06 0.32 6.89 37.30 0.26 0.58 16 24 C -0.12 -0.68 5.35 -27.88 -0.15 -0.83 16 25 C -0.16 -1.30 10.11 -26.69 -0.27 -1.57 16 26 C -0.17 -1.13 9.91 -26.69 -0.26 -1.39 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.40 4.14 8.35 -40.82 -0.34 3.80 16 31 H 0.08 1.15 7.88 -51.93 -0.41 0.74 16 32 H 0.08 1.23 7.16 -51.93 -0.37 0.86 16 33 H 0.40 2.19 7.10 -40.82 -0.29 1.90 16 34 H 0.14 1.24 7.29 -52.49 -0.38 0.85 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.25 8.09 -51.93 -0.42 -0.17 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.28 7.22 -51.93 -0.37 -0.09 16 41 H 0.11 0.90 8.04 -51.93 -0.42 0.49 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -38.06 386.52 -8.98 -47.03 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.36 Total: 2.84 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.14 Total: -3.01 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.14 Total: -42.11 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.21 Total: -23.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.06 -8.98 -47.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505954119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.841 kcal (2) G-P(sol) polarization free energy of solvation -38.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds