Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00360 * 3 2 1 5 5 H 1.48504 * 109.47138 * 30.00311 * 3 2 1 6 6 H 1.48507 * 109.47178 * 150.00368 * 3 2 1 7 7 C 1.38803 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00363 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99697 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99603 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46438 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00376 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99383 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99828 * 180.27296 * 13 11 10 15 15 C 1.53001 * 109.47069 * 185.56626 * 14 13 11 16 16 N 1.46501 * 115.54961 * 273.18140 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.73036 * 16 15 14 18 18 O 1.21615 * 120.00316 * 354.97160 * 17 16 15 19 19 C 1.47099 * 119.99841 * 174.97617 * 17 16 15 20 20 C 1.32092 * 118.87929 * 179.97438 * 19 17 16 21 21 C 1.50269 * 122.57978 * 180.36662 * 20 19 17 22 22 O 1.42893 * 110.09340 * 344.36293 * 21 20 19 23 23 C 1.43268 * 113.10454 * 50.52271 * 22 21 20 24 24 C 1.50423 * 118.87739 * 359.72993 * 19 17 16 25 25 C 1.53002 * 117.49672 * 127.51467 * 15 14 13 26 26 C 1.53000 * 117.49854 * 58.85382 * 15 14 13 27 27 H 0.97001 * 119.99959 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46899 * 60.00536 * 10 9 7 29 29 H 1.08993 * 109.47236 * 299.99440 * 10 9 7 30 30 H 0.96997 * 120.00510 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47235 * 305.56867 * 14 13 11 32 32 H 1.08999 * 109.46840 * 65.56631 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.72564 * 16 15 14 34 34 H 1.07993 * 118.70553 * 0.39156 * 20 19 17 35 35 H 1.09001 * 109.36254 * 104.54534 * 21 20 19 36 36 H 1.08991 * 109.36955 * 224.16628 * 21 20 19 37 37 H 1.08997 * 109.63649 * 50.86067 * 23 22 21 38 38 H 1.08999 * 109.63743 * 171.26590 * 23 22 21 39 39 H 1.08994 * 109.45661 * 283.37709 * 24 19 17 40 40 H 1.08996 * 109.45149 * 43.31455 * 24 19 17 41 41 H 1.08997 * 117.49778 * 359.97438 * 25 15 14 42 42 H 1.09000 * 117.49809 * 145.02240 * 25 15 14 43 43 H 1.09002 * 117.49714 * 214.97440 * 26 15 14 44 44 H 1.08996 * 117.49970 * 359.97287 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8440 -6.3431 -0.0033 14 6 2.3303 -7.7151 -0.0089 15 6 3.4956 -8.6967 0.1303 16 7 4.1467 -9.0864 -1.1228 17 6 3.4644 -9.7936 -2.0452 18 8 2.3399 -10.1870 -1.8003 19 6 4.0798 -10.0899 -3.3479 20 6 3.3914 -10.7852 -4.2353 21 6 3.9417 -11.1417 -5.5874 22 8 5.0883 -10.3398 -5.8777 23 6 6.0576 -10.3421 -4.8228 24 6 5.4695 -9.5860 -3.6263 25 6 3.4036 -9.7502 1.2360 26 6 4.3758 -8.5761 1.3760 27 1 -0.4850 0.8401 0.0004 28 1 3.1250 -3.7318 0.8875 29 1 3.1237 -3.7310 -0.8925 30 1 3.8008 -6.1836 -0.0043 31 1 1.6412 -7.8485 0.8251 32 1 1.8068 -7.9032 -0.9463 33 1 5.0688 -8.8353 -1.2888 34 1 2.3938 -11.1099 -3.9791 35 1 4.2251 -12.1942 -5.5963 36 1 3.1781 -10.9685 -6.3456 37 1 6.2847 -11.3690 -4.5362 38 1 6.9677 -9.8464 -5.1605 39 1 5.4312 -8.5199 -3.8498 40 1 6.0975 -9.7507 -2.7508 41 1 2.5130 -9.7438 1.8644 42 1 3.8279 -10.7331 1.0312 43 1 5.4392 -8.7872 1.2632 44 1 4.1249 -7.7973 2.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505954119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -104.519469 kcal Electronic energy + Delta-G solvation = -26445.434651 eV Core-core repulsion = 22489.026770 eV Total energy + Delta-G solvation = -3956.407881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.60145 -40.67484 -39.87014 -38.52737 -35.33039 -34.97096 -34.58327 -33.71146 -31.96896 -31.30577 -27.97430 -27.51101 -27.07174 -24.89884 -23.80674 -23.06413 -21.75207 -21.01592 -19.84545 -19.60972 -18.63988 -18.09437 -17.67953 -17.21107 -17.03697 -16.87932 -16.52785 -16.33228 -16.31010 -15.93709 -15.70175 -15.33452 -15.00160 -14.65644 -14.56753 -14.44573 -14.33195 -13.74122 -13.65207 -13.38933 -13.31549 -13.16837 -12.88755 -12.61491 -12.54930 -12.48514 -12.04424 -11.85427 -11.73460 -11.55355 -11.21330 -11.14304 -10.99237 -10.58468 -10.32307 -10.27487 -10.19681 -10.04904 -8.67939 -8.34495 -6.13248 0.22540 1.25277 1.43079 1.46258 1.56345 1.57013 1.87975 2.10897 2.13925 2.27423 2.76539 2.92126 2.99744 3.31560 3.38184 3.55313 3.66888 3.72685 3.83830 3.85657 3.99284 4.21310 4.28356 4.30108 4.38398 4.41935 4.48850 4.52454 4.56554 4.66321 4.69486 4.71275 4.79805 4.93549 4.96556 5.14198 5.21752 5.30561 5.39513 5.41925 5.45049 6.10234 6.19970 6.42721 6.46674 7.06551 7.13292 7.19890 8.74831 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.002234 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.539120 B =12530.158880 C =13592.714546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.704 5.704 14 C 0.160 3.840 15 C 0.066 3.934 16 N -0.678 5.678 17 C 0.548 3.452 18 O -0.576 6.576 19 C -0.181 4.181 20 C -0.113 4.113 21 C 0.085 3.915 22 O -0.398 6.398 23 C 0.055 3.945 24 C -0.115 4.115 25 C -0.161 4.161 26 C -0.131 4.131 27 H 0.271 0.729 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.419 0.581 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.135 0.865 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.221 -25.388 -4.841 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.276 4.276 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.359 5.359 14 C 0.035 3.965 15 C -0.022 4.022 16 N -0.330 5.330 17 C 0.338 3.662 18 O -0.457 6.457 19 C -0.184 4.184 20 C -0.133 4.133 21 C 0.009 3.991 22 O -0.317 6.317 23 C -0.021 4.021 24 C -0.152 4.152 25 C -0.200 4.200 26 C -0.169 4.169 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.255 0.745 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.259 0.741 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.153 0.847 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.347 -25.794 -4.837 32.021 hybrid contribution 1.465 1.231 0.146 1.919 sum 19.811 -24.563 -4.691 31.904 Atomic orbital electron populations 1.70194 1.08071 1.28608 1.48055 1.26171 0.95975 1.03456 0.93756 0.84925 0.78240 0.75854 0.78773 1.19367 1.20406 1.17924 1.23198 0.95384 0.91771 1.58801 0.89660 1.85685 1.10768 0.99483 1.97067 1.23341 1.03480 0.93766 1.07043 1.20199 0.86190 0.86844 0.75030 1.90706 1.17715 1.86161 1.50132 1.45674 1.10297 1.04348 1.75572 1.20791 0.94725 0.79604 1.01376 1.20578 0.98457 1.01166 0.81987 1.45089 1.16473 1.55172 1.16294 1.18907 0.85087 0.77173 0.85063 1.90800 1.20902 1.53608 1.80374 1.20991 0.99376 1.04517 0.93515 1.23918 0.99740 0.93788 0.95839 1.21735 0.88485 0.95957 0.92889 1.88138 1.30665 1.70661 1.42269 1.22906 0.91798 1.00885 0.86555 1.21171 0.91398 1.01558 1.01076 1.23413 1.02517 0.95151 0.98911 1.23514 0.98497 1.00298 0.94548 0.92028 0.86616 0.87153 0.74513 0.91362 0.94069 0.74118 0.86172 0.88598 0.86002 0.91148 0.86207 0.89364 0.87066 0.88234 0.87524 0.84712 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.63 5.49 84.86 0.47 1.09 16 3 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.54 -31.01 9.50 67.96 0.65 -30.36 16 8 H 0.09 4.46 7.80 -2.92 -0.02 4.44 16 9 S -0.16 -8.83 20.57 -56.49 -1.16 -10.00 16 10 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 11 C 0.53 20.23 7.85 87.66 0.69 20.92 16 12 O -0.57 -27.88 15.85 -3.01 -0.05 -27.93 16 13 N -0.70 -18.35 5.43 -463.05 -2.52 -20.87 16 14 C 0.16 4.28 5.66 86.38 0.49 4.77 16 15 C 0.07 1.14 1.73 3.60 0.01 1.15 16 16 N -0.68 -10.13 5.40 -426.48 -2.30 -12.43 16 17 C 0.55 11.82 7.41 86.57 0.64 12.47 16 18 O -0.58 -17.83 15.27 -4.08 -0.06 -17.89 16 19 C -0.18 -2.98 5.86 -18.59 -0.11 -3.08 16 20 C -0.11 -1.87 9.58 24.59 0.24 -1.63 16 21 C 0.09 1.00 7.04 71.10 0.50 1.50 16 22 O -0.40 -5.79 10.83 -148.98 -1.61 -7.40 16 23 C 0.05 0.46 6.89 72.07 0.50 0.95 16 24 C -0.11 -1.04 5.35 29.85 0.16 -0.88 16 25 C -0.16 -2.41 10.11 30.62 0.31 -2.10 16 26 C -0.13 -1.30 9.91 30.62 0.30 -1.00 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 29 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 30 H 0.42 7.40 8.35 -92.71 -0.77 6.62 16 31 H 0.07 2.01 7.88 -2.39 -0.02 1.99 16 32 H 0.04 1.41 7.16 -2.39 -0.02 1.40 16 33 H 0.42 3.16 7.10 -92.71 -0.66 2.50 16 34 H 0.12 2.36 7.29 -2.91 -0.02 2.34 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 0.40 8.09 -2.39 -0.02 0.39 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 0.34 7.22 -2.39 -0.02 0.32 16 41 H 0.10 1.63 8.04 -2.39 -0.02 1.62 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -88.10 386.52 -0.51 -88.61 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.39 Total: 19.41 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.27 Total: -0.72 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.53 Total: -89.60 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.72 Total: -53.22 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -10.00 kcal Total: -88.10 -0.51 -88.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505954119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.907 kcal (2) G-P(sol) polarization free energy of solvation -88.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds