Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48496 * 109.46958 * 239.99268 * 3 2 1 5 5 H 1.48494 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47177 * 119.99449 * 3 2 1 7 7 C 1.38795 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00300 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00253 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99808 * 5.16232 * 11 10 9 13 13 N 1.34770 * 119.99913 * 185.15823 * 11 10 9 14 14 C 1.46499 * 119.99993 * 175.35772 * 13 11 10 15 15 C 1.53005 * 115.54741 * 59.11252 * 14 13 11 16 16 N 1.46502 * 109.46980 * 81.18053 * 15 14 13 17 17 C 1.34778 * 119.99778 * 184.90040 * 16 15 14 18 18 O 1.21734 * 120.00205 * 5.08851 * 17 16 15 19 19 C 1.41799 * 119.99971 * 185.08423 * 17 16 15 20 20 C 1.33449 * 118.78687 * 185.38911 * 19 17 16 21 21 O 1.34349 * 123.08076 * 180.11189 * 20 19 17 22 22 C 1.45352 * 117.54810 * 344.22655 * 21 20 19 23 23 C 1.53485 * 108.26240 * 47.21850 * 22 21 20 24 24 C 1.50422 * 118.78645 * 5.66206 * 19 17 16 25 25 C 1.52997 * 117.50098 * 273.44553 * 14 13 11 26 26 C 1.53000 * 117.50161 * 204.77951 * 14 13 11 27 27 H 0.97003 * 120.00328 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46523 * 60.00365 * 10 9 7 29 29 H 1.08995 * 109.46886 * 300.00274 * 10 9 7 30 30 H 0.97000 * 120.00307 * 355.08548 * 13 11 10 31 31 H 1.09003 * 109.46957 * 201.17344 * 15 14 13 32 32 H 1.08992 * 109.47224 * 321.18122 * 15 14 13 33 33 H 0.96995 * 120.00321 * 4.89485 * 16 15 14 34 34 H 1.08001 * 118.46468 * 0.39772 * 20 19 17 35 35 H 1.09000 * 109.70369 * 287.52825 * 22 21 20 36 36 H 1.08997 * 109.74318 * 166.93347 * 22 21 20 37 37 H 1.09001 * 109.70525 * 177.60402 * 23 22 21 38 38 H 1.09004 * 109.70365 * 56.99392 * 23 22 21 39 39 H 1.08998 * 109.45053 * 282.35543 * 24 19 17 40 40 H 1.09001 * 109.45398 * 42.31583 * 24 19 17 41 41 H 1.08999 * 117.49787 * 359.97438 * 25 14 13 42 42 H 1.08998 * 117.50137 * 145.02005 * 25 14 13 43 43 H 1.08994 * 117.50014 * 214.97938 * 26 14 13 44 44 H 1.09004 * 117.49592 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7950 -5.5038 -0.0929 13 7 2.8397 -6.3414 0.1062 14 6 2.3205 -7.7074 0.2093 15 6 1.4494 -8.1722 -0.9596 16 7 2.3070 -8.6026 -2.0667 17 6 1.7579 -8.9617 -3.2440 18 8 0.5593 -8.8407 -3.4188 19 6 2.5766 -9.4803 -4.2792 20 6 2.0276 -9.7260 -5.4705 21 8 2.7214 -10.2189 -6.5100 22 6 4.1720 -10.1636 -6.4369 23 6 4.6040 -10.6791 -5.0572 24 6 4.0303 -9.7390 -3.9922 25 6 1.9651 -8.2247 1.6046 26 6 3.2099 -8.7520 0.8865 27 1 -0.4851 0.8400 -0.0004 28 1 3.1243 -3.7313 0.8906 29 1 3.1244 -3.7313 -0.8894 30 1 3.7970 -6.1848 0.1096 31 1 0.8251 -9.0060 -0.6383 32 1 0.8154 -7.3495 -1.2898 33 1 3.2698 -8.6290 -1.9525 34 1 0.9773 -9.5145 -5.6068 35 1 4.5076 -9.1346 -6.5663 36 1 4.6042 -10.7918 -7.2158 37 1 5.6921 -10.6877 -4.9922 38 1 4.2182 -11.6870 -4.9041 39 1 4.5768 -8.7960 -4.0079 40 1 4.1299 -10.2001 -3.0096 41 1 2.1179 -7.5488 2.4459 42 1 1.1110 -8.8965 1.6898 43 1 3.1742 -9.7704 0.4997 44 1 4.1816 -8.4229 1.2550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505979886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -71.527128 kcal Electronic energy + Delta-G solvation = -26667.969360 eV Core-core repulsion = 22712.992134 eV Total energy + Delta-G solvation = -3954.977226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91769 -39.95475 -39.01639 -37.33142 -34.79118 -33.93168 -32.75782 -32.42852 -31.96163 -29.06779 -27.40437 -26.16444 -25.48852 -24.19232 -22.88956 -21.63341 -21.27799 -19.77222 -19.13474 -18.24033 -17.86437 -16.97393 -16.46913 -16.21781 -16.11539 -15.58188 -15.28558 -15.08041 -14.80865 -14.71153 -14.57642 -14.38198 -14.00187 -13.72032 -13.41685 -13.27550 -13.18328 -12.81253 -12.58814 -12.42545 -11.98829 -11.79473 -11.76082 -11.39914 -11.12109 -11.06867 -11.04903 -11.03347 -10.78603 -10.58840 -9.92764 -9.83204 -9.44418 -9.06562 -9.04151 -8.90707 -8.73851 -8.24179 -6.50015 -6.21427 -3.92276 1.17755 2.78715 2.89232 3.00369 3.15028 3.23076 3.25749 3.27911 3.29163 3.59942 3.70573 4.16363 4.20139 4.24874 4.36629 4.41589 4.62587 4.71534 4.72109 4.80308 4.98039 5.02873 5.09953 5.13513 5.15303 5.30914 5.34340 5.38483 5.55481 5.57926 5.65118 5.68556 5.71072 5.85451 5.87214 5.89035 6.08271 6.11950 6.40273 6.63165 6.85846 7.48813 7.58688 7.64814 8.24255 8.34618 8.58835 9.23468 10.85891 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002423 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.722095 B =11552.937078 C =12701.709296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.504 6.504 13 N -0.709 5.709 14 C 0.093 3.907 15 C 0.146 3.854 16 N -0.724 5.724 17 C 0.570 3.430 18 O -0.554 6.554 19 C -0.318 4.318 20 C 0.160 3.840 21 O -0.311 6.311 22 C 0.051 3.949 23 C -0.156 4.156 24 C -0.073 4.073 25 C -0.162 4.162 26 C -0.173 4.173 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.400 0.600 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.396 0.604 34 H 0.181 0.819 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.405 -24.449 -6.221 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.170 5.830 10 C -0.303 4.303 11 C 0.321 3.679 12 O -0.377 6.377 13 N -0.364 5.364 14 C 0.004 3.996 15 C 0.021 3.979 16 N -0.376 5.376 17 C 0.361 3.639 18 O -0.435 6.435 19 C -0.323 4.323 20 C 0.092 3.908 21 O -0.221 6.221 22 C -0.023 4.023 23 C -0.194 4.194 24 C -0.110 4.110 25 C -0.201 4.201 26 C -0.210 4.210 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.234 0.766 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.231 0.769 34 H 0.198 0.802 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.309 -24.660 -6.581 27.916 hybrid contribution 3.197 1.520 0.405 3.563 sum 14.506 -23.140 -6.176 28.001 Atomic orbital electron populations 1.70005 1.05945 1.27598 1.46658 1.24990 0.95027 0.99016 0.94534 0.86226 0.79240 0.81274 0.78766 1.19953 1.20789 1.19954 1.22818 0.94843 0.91699 1.59173 0.91020 1.85443 1.04644 0.96205 1.96705 1.23531 1.06705 0.95276 1.04829 1.20345 0.86540 0.85996 0.74991 1.90703 1.15525 1.85216 1.46254 1.45403 1.09582 1.03788 1.77596 1.20684 1.01588 0.83134 0.94192 1.21119 0.91822 1.00719 0.84194 1.45835 1.10329 1.68558 1.12898 1.16561 0.87586 0.77691 0.82108 1.90847 1.15527 1.55811 1.81327 1.20023 0.98134 1.18003 0.96151 1.23019 0.97010 0.85684 0.85047 1.86277 1.20669 1.75077 1.40119 1.23572 0.77523 1.02604 0.98589 1.22185 1.02117 1.00308 0.94766 1.20260 0.91561 0.99769 0.99427 1.23390 0.98655 1.02993 0.95077 1.23330 0.96077 0.98185 1.03442 0.92093 0.89367 0.89225 0.76571 0.90893 0.88201 0.76917 0.80205 0.90681 0.87322 0.89475 0.90323 0.90713 0.90278 0.87841 0.87778 0.87723 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.54 20.58 -107.50 -2.21 -3.75 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.79 7.68 -10.99 -0.08 9.71 16 12 O -0.50 -11.32 14.13 5.56 0.08 -11.24 16 13 N -0.71 -9.00 5.48 -47.61 -0.26 -9.26 16 14 C 0.09 1.04 1.91 -131.82 -0.25 0.79 16 15 C 0.15 1.95 5.59 -4.04 -0.02 1.93 16 16 N -0.72 -8.15 5.38 -63.17 -0.34 -8.49 16 17 C 0.57 7.58 7.51 -14.90 -0.11 7.46 16 18 O -0.55 -9.75 15.91 5.16 0.08 -9.67 16 19 C -0.32 -3.20 5.70 -105.07 -0.60 -3.80 16 20 C 0.16 1.59 10.46 29.06 0.30 1.90 16 21 O -0.31 -2.70 10.47 -14.89 -0.16 -2.85 16 22 C 0.05 0.28 7.15 37.41 0.27 0.54 16 23 C -0.16 -0.75 6.23 -26.37 -0.16 -0.91 16 24 C -0.07 -0.47 4.90 -27.91 -0.14 -0.61 16 25 C -0.16 -1.63 10.11 -26.69 -0.27 -1.90 16 26 C -0.17 -1.27 10.02 -26.69 -0.27 -1.54 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 30 H 0.40 3.80 8.83 -40.82 -0.36 3.44 16 31 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 32 H 0.10 1.82 6.23 -51.93 -0.32 1.50 16 33 H 0.40 3.30 6.75 -40.82 -0.28 3.03 16 34 H 0.18 1.87 7.22 -52.49 -0.38 1.49 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.43 7.50 -51.93 -0.39 0.04 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -37.50 384.54 -8.55 -46.05 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.33 Total: 4.84 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.92 Total: -2.26 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.13 Total: -43.33 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.00 Total: -23.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.50 -8.55 -46.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505979886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.474 kcal (2) G-P(sol) polarization free energy of solvation -37.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds