Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48496 * 109.46958 * 239.99268 * 3 2 1 5 5 H 1.48494 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47177 * 119.99449 * 3 2 1 7 7 C 1.38795 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00300 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00253 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99808 * 5.16232 * 11 10 9 13 13 N 1.34770 * 119.99913 * 185.15823 * 11 10 9 14 14 C 1.46499 * 119.99993 * 175.35772 * 13 11 10 15 15 C 1.53005 * 115.54741 * 59.11252 * 14 13 11 16 16 N 1.46502 * 109.46980 * 81.18053 * 15 14 13 17 17 C 1.34778 * 119.99778 * 184.90040 * 16 15 14 18 18 O 1.21734 * 120.00205 * 5.08851 * 17 16 15 19 19 C 1.41799 * 119.99971 * 185.08423 * 17 16 15 20 20 C 1.33449 * 118.78687 * 185.38911 * 19 17 16 21 21 O 1.34349 * 123.08076 * 180.11189 * 20 19 17 22 22 C 1.45352 * 117.54810 * 344.22655 * 21 20 19 23 23 C 1.53485 * 108.26240 * 47.21850 * 22 21 20 24 24 C 1.50422 * 118.78645 * 5.66206 * 19 17 16 25 25 C 1.52997 * 117.50098 * 273.44553 * 14 13 11 26 26 C 1.53000 * 117.50161 * 204.77951 * 14 13 11 27 27 H 0.97003 * 120.00328 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46523 * 60.00365 * 10 9 7 29 29 H 1.08995 * 109.46886 * 300.00274 * 10 9 7 30 30 H 0.97000 * 120.00307 * 355.08548 * 13 11 10 31 31 H 1.09003 * 109.46957 * 201.17344 * 15 14 13 32 32 H 1.08992 * 109.47224 * 321.18122 * 15 14 13 33 33 H 0.96995 * 120.00321 * 4.89485 * 16 15 14 34 34 H 1.08001 * 118.46468 * 0.39772 * 20 19 17 35 35 H 1.09000 * 109.70369 * 287.52825 * 22 21 20 36 36 H 1.08997 * 109.74318 * 166.93347 * 22 21 20 37 37 H 1.09001 * 109.70525 * 177.60402 * 23 22 21 38 38 H 1.09004 * 109.70365 * 56.99392 * 23 22 21 39 39 H 1.08998 * 109.45053 * 282.35543 * 24 19 17 40 40 H 1.09001 * 109.45398 * 42.31583 * 24 19 17 41 41 H 1.08999 * 117.49787 * 359.97438 * 25 14 13 42 42 H 1.08998 * 117.50137 * 145.02005 * 25 14 13 43 43 H 1.08994 * 117.50014 * 214.97938 * 26 14 13 44 44 H 1.09004 * 117.49592 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7950 -5.5038 -0.0929 13 7 2.8397 -6.3414 0.1062 14 6 2.3205 -7.7074 0.2093 15 6 1.4494 -8.1722 -0.9596 16 7 2.3070 -8.6026 -2.0667 17 6 1.7579 -8.9617 -3.2440 18 8 0.5593 -8.8407 -3.4188 19 6 2.5766 -9.4803 -4.2792 20 6 2.0276 -9.7260 -5.4705 21 8 2.7214 -10.2189 -6.5100 22 6 4.1720 -10.1636 -6.4369 23 6 4.6040 -10.6791 -5.0572 24 6 4.0303 -9.7390 -3.9922 25 6 1.9651 -8.2247 1.6046 26 6 3.2099 -8.7520 0.8865 27 1 -0.4851 0.8400 -0.0004 28 1 3.1243 -3.7313 0.8906 29 1 3.1244 -3.7313 -0.8894 30 1 3.7970 -6.1848 0.1096 31 1 0.8251 -9.0060 -0.6383 32 1 0.8154 -7.3495 -1.2898 33 1 3.2698 -8.6290 -1.9525 34 1 0.9773 -9.5145 -5.6068 35 1 4.5076 -9.1346 -6.5663 36 1 4.6042 -10.7918 -7.2158 37 1 5.6921 -10.6877 -4.9922 38 1 4.2182 -11.6870 -4.9041 39 1 4.5768 -8.7960 -4.0079 40 1 4.1299 -10.2001 -3.0096 41 1 2.1179 -7.5488 2.4459 42 1 1.1110 -8.8965 1.6898 43 1 3.1742 -9.7704 0.4997 44 1 4.1816 -8.4229 1.2550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505979886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -100.690587 kcal Electronic energy + Delta-G solvation = -26669.233982 eV Core-core repulsion = 22712.992134 eV Total energy + Delta-G solvation = -3956.241848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74741 -41.02605 -40.03484 -38.48062 -35.63645 -34.77056 -34.59904 -33.98239 -32.59522 -30.57540 -28.41380 -27.66925 -26.69251 -24.87977 -23.67981 -22.68213 -22.20293 -20.93010 -19.91247 -19.83600 -18.99867 -17.89034 -17.80329 -17.18076 -16.93365 -16.89066 -16.56207 -16.39615 -16.22748 -15.84206 -15.67808 -15.26679 -14.97449 -14.82213 -14.53549 -14.41534 -14.06684 -13.98542 -13.71998 -13.47374 -13.40547 -13.17988 -12.87373 -12.63894 -12.44574 -12.30826 -11.97463 -11.78955 -11.76382 -11.63651 -11.52088 -11.13928 -11.02881 -10.79832 -10.28723 -10.15704 -10.03002 -9.49864 -8.68250 -8.35371 -6.14031 0.33928 1.24070 1.43036 1.44659 1.54087 1.60782 2.04917 2.14516 2.26805 2.29441 2.38051 2.85569 2.98588 3.29301 3.50805 3.70738 3.74317 3.79858 3.87322 3.96280 4.00661 4.20238 4.26182 4.28661 4.38409 4.45623 4.51624 4.59146 4.62589 4.72972 4.74437 4.89885 4.94418 4.98849 5.09857 5.18668 5.19733 5.23346 5.39958 5.40572 5.52978 6.18297 6.18944 6.49844 6.59572 7.05403 7.25835 7.27851 8.73638 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002423 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.722095 B =11552.937078 C =12701.709296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.127 4.127 11 C 0.535 3.465 12 O -0.555 6.555 13 N -0.680 5.680 14 C 0.064 3.936 15 C 0.153 3.847 16 N -0.707 5.707 17 C 0.561 3.439 18 O -0.610 6.610 19 C -0.325 4.325 20 C 0.162 3.838 21 O -0.321 6.321 22 C 0.040 3.960 23 C -0.150 4.150 24 C -0.072 4.072 25 C -0.176 4.176 26 C -0.120 4.120 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.420 0.580 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.414 0.586 34 H 0.163 0.837 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.280 -25.718 -5.879 32.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.432 6.432 13 N -0.335 5.335 14 C -0.024 4.024 15 C 0.027 3.973 16 N -0.359 5.359 17 C 0.354 3.646 18 O -0.495 6.495 19 C -0.330 4.330 20 C 0.093 3.907 21 O -0.231 6.231 22 C -0.033 4.033 23 C -0.187 4.187 24 C -0.109 4.109 25 C -0.215 4.215 26 C -0.157 4.157 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.258 0.742 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.252 0.748 34 H 0.180 0.820 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.146 0.854 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.299 -25.973 -6.223 31.289 hybrid contribution 1.707 1.762 0.257 2.467 sum 18.006 -24.212 -5.966 30.758 Atomic orbital electron populations 1.70187 1.08064 1.28685 1.47957 1.26166 0.95968 1.03449 0.93736 0.84986 0.77781 0.75560 0.79562 1.18657 1.20491 1.18421 1.23167 0.95340 0.91922 1.58950 0.89795 1.85670 1.10647 0.99375 1.97048 1.23356 1.03487 0.94296 1.06713 1.20114 0.86292 0.86519 0.74995 1.90705 1.17787 1.85783 1.48892 1.45019 1.09904 1.03318 1.75228 1.20725 1.04526 0.83026 0.94136 1.20822 0.92203 0.98809 0.85430 1.45655 1.11000 1.67396 1.11845 1.17161 0.87212 0.77138 0.83107 1.90819 1.18110 1.58267 1.82340 1.20090 0.99913 1.18024 0.94925 1.22852 0.96738 0.85451 0.85638 1.86266 1.22832 1.74484 1.39546 1.23948 0.75411 1.03724 1.00172 1.22190 1.03718 0.99427 0.93348 1.20370 0.88783 1.00914 1.00870 1.23475 1.00893 1.03337 0.93789 1.23522 0.95794 0.97545 0.98868 0.92012 0.86956 0.87513 0.74159 0.90878 0.93710 0.74793 0.82017 0.90146 0.84877 0.86548 0.90630 0.89706 0.88782 0.88417 0.87690 0.85448 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.99 13.22 21.65 0.29 -56.70 16 2 C 0.01 0.66 5.49 84.86 0.47 1.12 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.72 20.58 -56.49 -1.16 -9.88 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.53 19.67 7.68 87.66 0.67 20.35 16 12 O -0.55 -26.24 14.13 -3.02 -0.04 -26.28 16 13 N -0.68 -16.04 5.48 -422.93 -2.32 -18.36 16 14 C 0.06 1.33 1.91 3.60 0.01 1.34 16 15 C 0.15 4.17 5.59 86.38 0.48 4.65 16 16 N -0.71 -15.42 5.38 -471.98 -2.54 -17.96 16 17 C 0.56 15.33 7.51 85.12 0.64 15.97 16 18 O -0.61 -23.18 15.91 -4.46 -0.07 -23.25 16 19 C -0.32 -6.37 5.70 -20.16 -0.11 -6.48 16 20 C 0.16 3.30 10.46 66.73 0.70 4.00 16 21 O -0.32 -5.34 10.47 -76.18 -0.80 -6.13 16 22 C 0.04 0.34 7.15 72.14 0.52 0.85 16 23 C -0.15 -0.92 6.23 30.83 0.19 -0.73 16 24 C -0.07 -0.72 4.90 29.83 0.15 -0.58 16 25 C -0.18 -3.21 10.11 30.62 0.31 -2.90 16 26 C -0.12 -1.23 10.02 30.62 0.31 -0.93 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 29 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 30 H 0.42 6.45 8.83 -92.71 -0.82 5.63 16 31 H 0.07 1.96 7.94 -2.39 -0.02 1.94 16 32 H 0.04 1.76 6.23 -2.39 -0.01 1.75 16 33 H 0.41 5.78 6.75 -92.71 -0.63 5.16 16 34 H 0.16 3.77 7.22 -2.91 -0.02 3.75 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.66 7.50 -2.39 -0.02 0.64 16 41 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.10 1.88 8.08 -2.39 -0.02 1.86 16 43 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -89.71 384.54 0.39 -89.32 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.40 Total: 22.07 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 5.41 Total: 1.32 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -4.57 Total: -93.02 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.91 Total: -55.67 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -89.71 0.39 -89.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505979886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.371 kcal (2) G-P(sol) polarization free energy of solvation -89.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds