Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38427 * 119.84328 * 2 1 4 4 C 1.37898 * 120.18215 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.86644 * 0.02562 * 4 3 2 6 6 C 1.47771 * 120.15356 * 179.97438 * 5 4 3 7 7 O 1.21566 * 119.99534 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99973 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99983 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47398 * 180.02562 * 9 8 6 11 11 O 1.42903 * 109.47134 * 64.99708 * 10 9 8 12 12 C 1.42898 * 113.99920 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47195 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47180 * 64.99552 * 13 12 11 15 15 C 1.46497 * 120.00114 * 270.00363 * 14 13 12 16 16 C 1.36943 * 119.99583 * 90.00055 * 14 13 12 17 17 H 1.07999 * 120.00176 * 22.70804 * 16 14 13 18 18 C 1.38810 * 119.99759 * 202.70642 * 16 14 13 19 19 N 1.31626 * 120.00193 * 11.51733 * 18 16 14 20 20 Si 1.86807 * 119.99854 * 191.51962 * 18 16 14 21 21 H 1.48499 * 109.47167 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47262 * 119.99835 * 20 18 16 23 23 H 1.48497 * 109.46560 * 239.99786 * 20 18 16 24 24 C 1.39697 * 119.68890 * 359.97438 * 5 4 3 25 25 Cl 1.73602 * 120.09077 * 179.97438 * 24 5 4 26 26 C 1.38145 * 119.81556 * 0.26097 * 24 5 4 27 27 H 1.09003 * 109.46530 * 90.00257 * 1 2 3 28 28 H 1.08996 * 109.46876 * 209.99820 * 1 2 3 29 29 H 1.08993 * 109.46828 * 330.00428 * 1 2 3 30 30 H 1.07993 * 119.90836 * 359.95484 * 3 2 1 31 31 H 1.07997 * 120.06704 * 179.97438 * 4 3 2 32 32 H 0.97003 * 120.00441 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.46694 * 299.99922 * 9 8 6 34 34 H 1.09000 * 109.46965 * 60.00057 * 9 8 6 35 35 H 1.08995 * 109.47613 * 184.99916 * 10 9 8 36 36 H 1.08999 * 109.46828 * 305.00264 * 10 9 8 37 37 H 1.09004 * 109.47000 * 300.00276 * 12 11 10 38 38 H 1.09003 * 109.47197 * 60.00130 * 12 11 10 39 39 H 1.08995 * 109.47296 * 184.99776 * 13 12 11 40 40 H 1.09000 * 109.47125 * 304.99727 * 13 12 11 41 41 H 1.08998 * 109.47263 * 93.91899 * 15 14 13 42 42 H 1.09003 * 109.46915 * 213.91175 * 15 14 13 43 43 H 1.08989 * 109.47204 * 333.91338 * 15 14 13 44 44 H 0.97000 * 119.99864 * 180.02562 * 19 18 16 45 45 H 1.08002 * 119.93695 * 179.72272 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2007 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2773 0.0021 0.0005 6 6 5.7550 0.0035 0.0005 7 8 6.3637 -1.0488 0.0001 8 7 6.4278 1.1712 0.0011 9 6 7.8928 1.1726 0.0005 10 6 8.4016 2.6155 0.0019 11 8 8.0234 3.2527 1.2238 12 6 8.4517 4.6121 1.3271 13 6 7.9948 5.1902 2.6680 14 7 8.6723 4.4863 3.7596 15 6 8.0655 3.2895 4.3475 16 6 9.8728 4.9471 4.2305 17 1 10.1487 5.9812 4.0855 18 6 10.7350 4.0852 4.8941 19 7 10.5122 2.7881 4.8755 20 14 12.2118 4.7661 5.8135 21 1 12.2382 6.2450 5.6816 22 1 12.1138 4.3984 7.2489 23 1 13.4574 4.1961 5.2403 24 6 3.5766 -1.2064 0.0005 25 17 4.4394 -2.7128 -0.0001 26 6 2.1952 -1.1994 -0.0049 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6519 2.1336 -0.0007 31 1 4.1104 2.1467 0.0001 32 1 5.9421 2.0109 0.0018 33 1 8.2569 0.6584 0.8900 34 1 8.2563 0.6597 -0.8900 35 1 9.4878 2.6179 -0.0881 36 1 7.9661 3.1550 -0.8391 37 1 9.5390 4.6562 1.2644 38 1 8.0170 5.1929 0.5136 39 1 8.2432 6.2507 2.7100 40 1 6.9166 5.0654 2.7690 41 1 8.4618 2.4017 3.8546 42 1 8.2990 3.2490 5.4114 43 1 6.9845 3.3272 4.2140 44 1 11.1145 2.1858 5.3396 45 1 1.6515 -2.1326 -0.0095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506975773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -34.124076 kcal Electronic energy + Delta-G solvation = -26886.901523 eV Core-core repulsion = 22931.502509 eV Total energy + Delta-G solvation = -3955.399014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.36768 -38.75242 -37.58015 -36.52119 -35.41192 -34.42494 -33.20123 -31.46356 -31.10088 -29.65870 -28.10641 -27.28666 -25.68643 -23.27676 -23.09174 -22.95958 -21.90799 -20.52912 -20.31306 -18.21213 -16.86465 -16.53619 -16.09905 -15.96074 -15.65370 -15.17176 -15.05079 -14.96846 -14.44686 -14.24990 -14.19170 -13.85075 -13.53597 -13.35424 -13.13354 -12.92399 -12.74404 -12.39161 -12.16375 -12.11914 -11.69446 -11.54386 -11.44274 -11.37407 -11.14694 -10.90683 -10.83264 -10.75207 -10.49723 -10.04844 -9.88261 -9.79520 -9.52794 -9.25187 -9.06110 -9.01865 -8.82536 -8.47353 -6.65464 -5.63724 -3.10399 0.47271 0.87100 2.03009 2.71607 3.15427 3.40462 3.47284 3.49325 3.54419 4.15424 4.33044 4.35088 4.55312 4.59502 4.79027 4.86058 5.03171 5.13661 5.17692 5.26037 5.30072 5.43234 5.46681 5.57498 5.60015 5.68548 5.72925 5.80014 5.81521 6.01342 6.06138 6.12373 6.20703 6.23458 6.36099 6.48504 6.55394 6.77096 6.97303 7.53448 7.53715 7.78726 7.84997 8.00510 8.25650 8.47795 9.32210 9.95967 10.46327 11.40190 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.002416 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.301603 B =11584.803148 C =12069.388566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.126 4.126 4 C -0.068 4.068 5 C -0.131 4.131 6 C 0.550 3.450 7 O -0.518 6.518 8 N -0.714 5.714 9 C 0.126 3.874 10 C 0.050 3.950 11 O -0.367 6.367 12 C 0.042 3.958 13 C 0.153 3.847 14 N -0.596 5.596 15 C 0.175 3.825 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.018 3.982 25 Cl -0.031 7.031 26 C -0.125 4.125 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.401 0.599 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.037 0.963 43 H -0.008 1.008 44 H 0.250 0.750 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.811 -4.034 -14.681 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.135 4.135 6 C 0.336 3.664 7 O -0.395 6.395 8 N -0.367 5.367 9 C 0.003 3.997 10 C -0.028 4.028 11 O -0.285 6.285 12 C -0.037 4.037 13 C 0.025 3.975 14 N -0.319 5.319 15 C 0.030 3.970 16 C -0.387 4.387 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.010 4.010 25 Cl -0.002 7.002 26 C -0.144 4.144 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.236 0.764 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.061 0.939 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.261 -5.161 -14.417 24.606 hybrid contribution 1.048 0.728 0.249 1.300 sum -18.213 -4.433 -14.168 23.497 Atomic orbital electron populations 1.20871 0.90193 1.03503 1.02878 1.20072 0.96623 0.92394 0.96224 1.21082 0.93828 0.98106 1.01391 1.21332 0.94485 0.96795 0.96095 1.19832 0.94020 0.92794 1.06865 1.18045 0.86597 0.84255 0.77461 1.90871 1.69457 1.30522 1.48652 1.45805 1.07685 1.08244 1.74926 1.21416 0.78954 0.96168 1.03179 1.22611 0.99551 0.92326 0.88264 1.88018 1.77912 1.26376 1.36244 1.23525 0.99177 0.81505 0.99519 1.20888 0.95587 0.95094 0.85966 1.43890 1.21697 1.30578 1.35701 1.20684 0.90042 0.89062 0.97185 1.19231 0.94160 0.93287 1.32001 0.91554 1.25045 0.97806 0.95120 1.01695 1.70110 1.38115 1.01029 1.45340 0.86238 0.82814 0.78166 0.79623 1.20431 1.21676 1.21842 1.21026 0.92243 0.87893 0.99819 1.98423 1.76715 1.29032 1.95994 1.20935 0.91549 0.98986 1.02908 0.90515 0.91005 0.90841 0.84744 0.84569 0.76406 0.89900 0.90378 0.91968 0.93850 0.93296 0.95758 0.92400 0.93895 0.94945 0.94437 0.98899 0.93921 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.00 36.01 0.36 -0.21 16 2 C -0.05 -0.41 5.89 -104.54 -0.62 -1.02 16 3 C -0.13 -0.99 9.68 -39.64 -0.38 -1.37 16 4 C -0.07 -0.65 9.54 -39.19 -0.37 -1.02 16 5 C -0.13 -1.63 5.88 -104.94 -0.62 -2.25 16 6 C 0.55 8.19 7.77 -12.37 -0.10 8.09 16 7 O -0.52 -9.30 13.97 5.31 0.07 -9.23 16 8 N -0.71 -9.56 5.45 -61.27 -0.33 -9.89 16 9 C 0.13 1.82 6.06 -4.04 -0.02 1.79 16 10 C 0.05 0.72 6.07 37.16 0.23 0.95 16 11 O -0.37 -6.77 9.85 -35.23 -0.35 -7.12 16 12 C 0.04 0.77 6.28 37.16 0.23 1.00 16 13 C 0.15 3.10 6.11 -4.04 -0.02 3.07 16 14 N -0.60 -15.23 2.89 -181.13 -0.52 -15.76 16 15 C 0.17 4.54 8.61 59.85 0.52 5.05 16 16 C -0.26 -7.11 9.67 -15.06 -0.15 -7.26 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.00 0.05 5.12 -17.43 -0.09 -0.03 16 19 N -0.90 -26.91 10.62 55.49 0.59 -26.32 16 20 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C 0.02 0.22 6.35 -39.07 -0.25 -0.03 16 25 Cl -0.03 -0.42 26.02 -51.86 -1.35 -1.77 16 26 C -0.13 -1.16 9.47 -39.60 -0.37 -1.54 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.14 1.04 6.41 -52.49 -0.34 0.71 16 32 H 0.40 4.51 6.51 -40.82 -0.27 4.25 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 40 H 0.04 0.80 7.87 -51.93 -0.41 0.40 16 41 H 0.03 0.92 7.43 -51.93 -0.39 0.54 16 42 H 0.04 1.04 7.20 -51.93 -0.37 0.67 16 43 H -0.01 -0.18 7.85 -51.94 -0.41 -0.58 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 45 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -34.04 388.89 -9.50 -43.54 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.79 Total: -1.61 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.66 Total: 5.23 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.27 Total: -51.97 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.27 Total: -16.35 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.35 Total: -1.77 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.04 -9.50 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506975773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.416 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds