Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37921 * 119.93433 * 2 1 4 4 C 1.39590 * 119.86145 * 180.29732 * 3 2 1 5 5 C 1.47786 * 120.12620 * 179.67822 * 4 3 2 6 6 O 1.21554 * 120.00409 * 41.48443 * 5 4 3 7 7 N 1.34777 * 119.99616 * 221.48902 * 5 4 3 8 8 C 1.46499 * 120.00048 * 355.42490 * 7 5 4 9 9 C 1.46505 * 119.99858 * 175.42761 * 7 5 4 10 10 C 1.52999 * 109.47127 * 89.99970 * 9 7 5 11 11 H 1.08995 * 109.46911 * 304.99772 * 10 9 7 12 12 O 1.42904 * 109.46870 * 64.99778 * 10 9 7 13 13 C 1.52999 * 109.46928 * 184.99540 * 10 9 7 14 14 N 1.46503 * 109.47191 * 179.97438 * 13 10 9 15 15 C 1.46499 * 120.00474 * 270.01037 * 14 13 10 16 16 C 1.36939 * 119.99771 * 89.99874 * 14 13 10 17 17 H 1.08004 * 119.99500 * 23.91528 * 16 14 13 18 18 C 1.38806 * 120.00375 * 203.91192 * 16 14 13 19 19 N 1.31626 * 119.99928 * 9.21553 * 18 16 14 20 20 Si 1.86802 * 120.00318 * 189.21955 * 18 16 14 21 21 H 1.48495 * 109.47011 * 89.99640 * 20 18 16 22 22 H 1.48504 * 109.46987 * 210.00091 * 20 18 16 23 23 H 1.48501 * 109.46721 * 329.99746 * 20 18 16 24 24 C 1.39633 * 119.74123 * 359.39631 * 4 3 2 25 25 C 1.37868 * 119.86451 * 0.28342 * 24 4 3 26 26 C 1.38492 * 119.93354 * 179.67001 * 2 1 3 27 27 Cl 1.73601 * 119.86586 * 0.02731 * 26 2 1 28 28 H 1.08993 * 109.47233 * 270.32663 * 1 2 3 29 29 H 1.09000 * 109.46891 * 30.32367 * 1 2 3 30 30 H 1.09000 * 109.47371 * 150.32436 * 1 2 3 31 31 H 1.07997 * 120.06377 * 359.96858 * 3 2 1 32 32 H 1.09000 * 109.47291 * 275.32833 * 8 7 5 33 33 H 1.08999 * 109.47110 * 35.33297 * 8 7 5 34 34 H 1.09001 * 109.47211 * 155.33061 * 8 7 5 35 35 H 1.08994 * 109.47029 * 329.99750 * 9 7 5 36 36 H 1.09011 * 109.46860 * 209.99698 * 9 7 5 37 37 H 0.96702 * 114.00182 * 60.01084 * 12 10 9 38 38 H 1.08995 * 109.47514 * 299.99863 * 13 10 9 39 39 H 1.09002 * 109.46676 * 60.00749 * 13 10 9 40 40 H 1.08993 * 109.47470 * 94.98339 * 15 14 13 41 41 H 1.08997 * 109.47174 * 214.99404 * 15 14 13 42 42 H 1.09005 * 109.46504 * 334.98507 * 15 14 13 43 43 H 0.97002 * 119.99988 * 179.97438 * 19 18 16 44 44 H 1.07997 * 120.06497 * 180.29491 * 24 4 3 45 45 H 1.07999 * 119.93132 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1952 0.0000 4 6 3.5912 1.1935 -0.0063 5 6 4.3345 2.4707 -0.0135 6 8 3.9618 3.3949 0.6827 7 7 5.4256 2.6110 -0.7921 8 6 5.9335 1.4675 -1.5543 9 6 6.1039 3.9068 -0.8762 10 6 7.1812 3.9899 0.2070 11 1 6.7323 3.7967 1.1813 12 8 8.1938 3.0156 -0.0526 13 6 7.8042 5.3873 0.2004 14 7 8.8354 5.4671 1.2381 15 6 8.4802 5.8990 2.5922 16 6 10.1312 5.1377 0.9423 17 1 10.4838 5.1954 -0.0769 18 6 10.9916 4.7299 1.9524 19 7 10.5224 4.4847 3.1575 20 14 12.8153 4.5290 1.6015 21 1 13.5143 5.8125 1.8644 22 1 13.3750 3.4712 2.4808 23 1 13.0063 4.1434 0.1802 24 6 4.2824 -0.0198 0.0002 25 6 3.5834 -1.2081 0.0069 26 6 2.1981 -1.2002 0.0069 27 17 1.3249 -2.7005 0.0148 28 1 -0.3633 0.0059 1.0276 29 1 -0.3633 0.8871 -0.5189 30 1 -0.3634 -0.8929 -0.5088 31 1 1.6553 2.1305 -0.0005 32 1 6.5860 0.8685 -0.9192 33 1 5.0969 0.8571 -1.8942 34 1 6.4954 1.8264 -2.4166 35 1 5.3783 4.7068 -0.7293 36 1 6.5666 4.0117 -1.8577 37 1 8.6371 3.1265 -0.9048 38 1 8.2531 5.5804 -0.7738 39 1 7.0318 6.1304 0.3985 40 1 8.2898 5.0245 3.2143 41 1 9.3020 6.4753 3.0170 42 1 7.5843 6.5187 2.5525 43 1 11.1236 4.1993 3.8632 44 1 5.3623 -0.0272 0.0002 45 1 4.1169 -2.1471 0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507693096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -32.059438 kcal Electronic energy + Delta-G solvation = -27417.093118 eV Core-core repulsion = 23461.783634 eV Total energy + Delta-G solvation = -3955.309485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.62967 -38.97754 -37.26980 -36.71740 -35.41515 -34.44677 -33.23386 -31.52261 -31.18098 -29.56585 -27.48101 -26.79055 -26.02075 -25.59755 -23.52120 -22.27453 -21.86859 -20.39982 -19.48250 -17.27922 -17.10320 -16.88316 -16.41223 -16.04401 -15.72867 -15.01183 -14.70969 -14.55600 -14.47641 -14.41982 -13.76020 -13.68829 -13.58215 -13.28863 -12.95750 -12.85189 -12.76919 -12.66205 -12.45621 -12.10630 -11.91314 -11.78150 -11.66494 -11.37127 -11.09890 -11.03387 -10.83200 -10.59363 -10.44811 -10.23483 -9.98581 -9.94585 -9.83146 -9.55936 -9.25393 -8.94295 -8.49619 -8.37337 -6.63023 -5.61377 -3.07825 0.49136 0.91446 1.74709 2.59529 2.94403 3.34998 3.42678 3.47580 3.49946 4.29660 4.34691 4.40317 4.56471 4.82254 4.88058 5.00124 5.05873 5.14203 5.21828 5.24095 5.27257 5.37410 5.44133 5.50241 5.58205 5.66951 5.69983 5.79911 5.82940 5.92046 5.95594 5.98589 6.05678 6.12463 6.34646 6.47950 6.58568 6.82982 6.89480 7.33518 7.45176 7.81710 7.88558 8.12008 8.43941 8.52254 9.32511 9.94895 10.44769 11.44017 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.002360 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.860306 B =11860.402307 C =12376.640298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.058 4.058 4 C -0.113 4.113 5 C 0.554 3.446 6 O -0.530 6.530 7 N -0.597 5.597 8 C 0.077 3.923 9 C 0.082 3.918 10 C 0.073 3.927 11 H 0.090 0.910 12 O -0.534 6.534 13 C 0.124 3.876 14 N -0.592 5.592 15 C 0.164 3.836 16 C -0.241 4.241 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.085 4.085 25 C -0.112 4.112 26 C -0.022 4.022 27 Cl -0.066 7.066 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.357 0.643 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.043 0.957 42 H -0.005 1.005 43 H 0.250 0.750 44 H 0.147 0.853 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.813 -11.459 -11.759 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 C -0.077 4.077 4 C -0.116 4.116 5 C 0.342 3.658 6 O -0.407 6.407 7 N -0.329 5.329 8 C -0.066 4.066 9 C -0.041 4.041 10 C 0.009 3.991 11 H 0.108 0.892 12 O -0.337 6.337 13 C -0.005 4.005 14 N -0.313 5.313 15 C 0.019 3.981 16 C -0.371 4.371 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.552 5.552 20 Si 0.735 3.265 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.104 4.104 25 C -0.131 4.131 26 C -0.048 4.048 27 Cl -0.037 7.037 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.201 0.799 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.014 0.986 43 H 0.060 0.940 44 H 0.164 0.836 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.151 -11.332 -10.632 24.663 hybrid contribution 1.225 -0.306 -0.572 1.386 sum -17.926 -11.639 -11.204 24.132 Atomic orbital electron populations 1.20880 0.89813 1.03596 1.03233 1.19699 0.97022 0.90988 1.00706 1.21018 0.92349 0.97769 0.96606 1.20047 0.94245 0.93661 1.03636 1.18239 0.80314 0.87194 0.80045 1.90813 1.68210 1.41270 1.40400 1.47665 1.27515 1.12129 1.45574 1.22089 0.99390 0.88980 0.96154 1.22543 0.96560 0.84414 1.00591 1.23194 0.86378 0.92451 0.97082 0.89169 1.86688 1.53012 1.52722 1.41237 1.21459 0.91881 0.93423 0.93726 1.43847 1.04054 1.76431 1.07015 1.20816 0.95052 0.96572 0.85658 1.19036 0.85631 1.38488 0.93941 0.91758 1.25045 0.98388 0.99476 0.96571 1.70060 1.33170 1.50161 1.01842 0.86269 0.85722 0.77230 0.77299 1.21781 1.21886 1.20663 1.21623 1.01214 0.90588 0.96935 1.21004 0.91749 0.99272 1.01039 1.21024 0.92456 0.86808 1.04549 1.98366 1.76566 1.32087 1.96707 0.90400 0.90843 0.90711 0.84240 0.91487 0.91321 0.90867 0.89476 0.90448 0.79857 0.93664 0.93689 0.95219 0.93788 0.98604 0.93960 0.83563 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.61 36.01 0.35 -0.50 16 2 C -0.08 -0.79 5.88 -104.64 -0.62 -1.40 16 3 C -0.06 -0.63 9.30 -39.19 -0.36 -1.00 16 4 C -0.11 -1.37 5.15 -104.97 -0.54 -1.91 16 5 C 0.55 8.32 7.32 -12.36 -0.09 8.23 16 6 O -0.53 -9.92 16.57 5.32 0.09 -9.83 16 7 N -0.60 -7.95 2.84 -182.71 -0.52 -8.47 16 8 C 0.08 0.75 8.57 59.85 0.51 1.26 16 9 C 0.08 1.15 5.07 -4.04 -0.02 1.13 16 10 C 0.07 1.34 3.48 -26.73 -0.09 1.25 16 11 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 12 O -0.53 -10.44 12.17 -35.23 -0.43 -10.86 16 13 C 0.12 2.48 5.43 -4.04 -0.02 2.46 16 14 N -0.59 -15.03 2.87 -181.12 -0.52 -15.55 16 15 C 0.16 4.23 9.00 59.85 0.54 4.77 16 16 C -0.24 -6.58 9.02 -15.06 -0.14 -6.71 16 17 H 0.06 1.69 7.84 -52.48 -0.41 1.28 16 18 C 0.00 0.09 5.17 -17.43 -0.09 0.00 16 19 N -0.91 -27.24 10.56 55.49 0.59 -26.65 16 20 Si 0.90 22.16 29.56 -169.99 -5.03 17.14 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.09 -0.88 7.63 -39.20 -0.30 -1.18 16 25 C -0.11 -1.02 9.81 -39.61 -0.39 -1.41 16 26 C -0.02 -0.20 6.32 -39.38 -0.25 -0.45 16 27 Cl -0.07 -0.56 27.27 -51.86 -1.41 -1.97 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.07 0.49 6.89 -51.93 -0.36 0.13 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.07 0.69 6.85 -51.93 -0.36 0.33 16 33 H 0.07 0.56 6.01 -51.93 -0.31 0.25 16 34 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 35 H 0.09 1.28 7.49 -51.93 -0.39 0.89 16 36 H 0.08 0.88 7.86 -51.92 -0.41 0.47 16 37 H 0.36 5.73 9.05 45.56 0.41 6.14 16 38 H 0.05 0.83 8.04 -51.93 -0.42 0.41 16 39 H 0.04 0.84 7.86 -51.93 -0.41 0.44 16 40 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 41 H 0.04 1.20 7.29 -51.93 -0.38 0.82 16 42 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.15 1.42 5.55 -52.49 -0.29 1.12 16 45 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -34.27 382.43 -8.74 -43.00 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.76 Total: 2.88 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.51 Total: 4.55 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.45 Total: -50.67 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.34 Total: -20.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.41 Total: -1.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.27 -8.74 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507693096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.944 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds