Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46740 * 240.00043 * 3 2 1 5 5 H 1.48492 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47147 * 120.00118 * 3 2 1 7 7 C 1.38795 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99785 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00363 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00075 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47198 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00375 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00200 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.88857 * 34.29247 * 14 13 11 16 16 C 1.54915 * 111.03417 * 270.38731 * 14 13 11 17 17 N 1.47418 * 104.83107 * 204.89999 * 16 14 13 18 18 C 1.34773 * 125.64758 * 204.17202 * 17 16 14 19 19 O 1.21618 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.47104 * 120.00204 * 179.97438 * 18 17 16 21 21 C 1.32997 * 120.00409 * 180.02562 * 20 18 17 22 22 C 1.51404 * 136.31096 * 359.63390 * 21 20 18 23 23 C 1.53380 * 87.51351 * 206.05302 * 22 21 20 24 24 C 1.51401 * 136.31938 * 179.97438 * 21 20 18 25 25 C 1.47029 * 108.70495 * 24.13113 * 17 16 14 26 26 C 1.54327 * 107.26790 * 358.93814 * 25 17 16 27 27 H 1.09001 * 110.71543 * 96.16961 * 26 25 17 28 28 O 1.42897 * 110.86707 * 219.37089 * 26 25 17 29 29 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47499 * 59.99859 * 10 9 7 31 31 H 1.08997 * 109.47031 * 299.99545 * 10 9 7 32 32 H 0.97001 * 119.99748 * 359.97438 * 13 11 10 33 33 H 1.08995 * 110.36257 * 323.74273 * 16 14 13 34 34 H 1.08997 * 110.36405 * 86.05992 * 16 14 13 35 35 H 1.08002 * 119.99530 * 0.02562 * 20 18 17 36 36 H 1.09001 * 113.56186 * 320.62754 * 22 21 20 37 37 H 1.08995 * 113.56555 * 91.37339 * 22 21 20 38 38 H 1.09003 * 113.97132 * 220.29107 * 23 22 21 39 39 H 1.09006 * 113.60034 * 88.79397 * 23 22 21 40 40 H 1.09000 * 113.56405 * 268.63445 * 24 21 20 41 41 H 1.09008 * 113.55709 * 39.28702 * 24 21 20 42 42 H 1.08993 * 109.88066 * 239.51797 * 25 17 16 43 43 H 1.09003 * 109.87770 * 118.35455 * 25 17 16 44 44 H 0.96693 * 114.00497 * 293.61342 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8440 -6.3431 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 1 1.4066 -7.7837 -0.5767 16 6 2.1246 -8.2331 1.4435 17 7 2.2167 -9.7004 1.3352 18 6 1.6698 -10.5870 2.1904 19 8 1.0359 -10.1938 3.1509 20 6 1.8396 -12.0302 1.9619 21 6 1.2994 -12.9051 2.8055 22 6 0.4758 -12.8377 4.0741 23 6 1.0512 -14.2113 4.4412 24 6 1.2389 -14.4129 2.9292 25 6 3.0032 -10.0365 0.1393 26 6 3.3950 -8.7072 -0.5398 27 1 4.3961 -8.4000 -0.2371 28 8 3.3103 -8.8178 -1.9620 29 1 -0.4850 0.8400 0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1243 -3.7314 -0.8905 32 1 3.8008 -6.1835 -0.0004 33 1 2.9077 -7.8510 2.0983 34 1 1.1424 -7.9410 1.8149 35 1 2.4028 -12.3793 1.1091 36 1 0.7848 -12.0424 4.7524 37 1 -0.5995 -12.8491 3.8966 38 1 0.3254 -14.8902 4.8890 39 1 1.9868 -14.1579 4.9981 40 1 0.3728 -14.8560 2.4378 41 1 2.1733 -14.9093 2.6672 42 1 2.4022 -10.6381 -0.5425 43 1 3.9005 -10.5841 0.4276 44 1 3.9549 -9.4263 -2.3482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001512884042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = -68.648275 kcal Electronic energy + Delta-G solvation = -26167.588681 eV Core-core repulsion = 22212.736292 eV Total energy + Delta-G solvation = -3954.852389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.67752 -39.54520 -38.72068 -37.89258 -35.85024 -34.19899 -32.41844 -31.61148 -30.29275 -29.09007 -28.01186 -26.17792 -25.48511 -24.52056 -22.98293 -21.56113 -20.56217 -20.21209 -18.33529 -17.99076 -17.73211 -17.54107 -16.62931 -16.25533 -15.91833 -15.85512 -15.37519 -14.99348 -14.80345 -14.75477 -14.45409 -14.10655 -13.89112 -13.57632 -13.25298 -13.06085 -12.86735 -12.76361 -12.62028 -12.43803 -12.32656 -12.07485 -11.82083 -11.42030 -11.06955 -11.02969 -11.02764 -10.97961 -10.78272 -10.73390 -9.95520 -9.82159 -9.59811 -9.47371 -9.16421 -9.04499 -8.85593 -8.23370 -6.49140 -6.20314 -3.91195 1.00803 2.47914 2.96391 3.00640 3.06366 3.24439 3.27572 3.30575 3.59152 3.67170 3.80999 4.05265 4.14880 4.21282 4.24612 4.34412 4.50536 4.66562 4.71410 4.89441 4.96040 5.08803 5.11411 5.13633 5.14719 5.20602 5.25368 5.32678 5.40337 5.48788 5.59241 5.68769 5.77624 5.82782 5.85646 5.88462 5.95593 6.12741 6.23149 6.49320 7.13727 7.20924 7.58847 7.60871 7.94294 8.35953 8.54040 9.24680 10.87042 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.001913 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.192068 B =14631.127039 C =15508.375556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.511 6.511 13 N -0.727 5.727 14 C 0.146 3.854 15 H 0.114 0.886 16 C 0.097 3.903 17 N -0.614 5.614 18 C 0.567 3.433 19 O -0.533 6.533 20 C -0.198 4.198 21 C -0.059 4.059 22 C -0.108 4.108 23 C -0.143 4.143 24 C -0.108 4.108 25 C 0.074 3.926 26 C 0.086 3.914 27 H 0.082 0.918 28 O -0.545 6.545 29 H 0.269 0.731 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.401 0.599 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.805 -30.361 1.900 32.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.322 3.678 12 O -0.384 6.384 13 N -0.381 5.381 14 C 0.039 3.961 15 H 0.132 0.868 16 C -0.027 4.027 17 N -0.349 5.349 18 C 0.359 3.641 19 O -0.411 6.411 20 C -0.219 4.219 21 C -0.061 4.061 22 C -0.145 4.145 23 C -0.180 4.180 24 C -0.145 4.145 25 C -0.051 4.051 26 C 0.026 3.974 27 H 0.100 0.900 28 O -0.350 6.350 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.235 0.765 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.759 -29.970 2.548 31.062 hybrid contribution 3.105 0.915 -0.250 3.247 sum 10.864 -29.054 2.298 31.104 Atomic orbital electron populations 1.70006 1.05950 1.27585 1.46699 1.24991 0.95028 0.99021 0.94528 0.86220 0.79229 0.81248 0.78772 1.19942 1.20813 1.19959 1.22824 0.94876 0.91656 1.59138 0.90952 1.85438 1.04718 0.96269 1.96726 1.23527 1.06729 0.95031 1.05059 1.20382 0.86517 0.86245 0.74697 1.90725 1.15308 1.85430 1.46894 1.45808 1.10034 1.04244 1.78010 1.21899 0.98257 0.81223 0.94739 0.86769 1.22673 1.04353 0.78844 0.96830 1.48082 1.53752 1.06792 1.26306 1.18103 0.78547 0.85879 0.81586 1.90817 1.40625 1.80452 1.29185 1.21501 1.07939 0.91075 1.01370 1.23533 0.92641 0.96295 0.93620 1.22258 0.99701 0.97839 0.94675 1.22739 1.01939 0.97740 0.95573 1.22366 1.03113 0.91967 0.97027 1.22764 0.96300 0.98173 0.87837 1.23053 0.98943 0.93666 0.81771 0.90037 1.86675 1.61619 1.68426 1.18297 0.92111 0.89066 0.89047 0.76488 0.90628 0.88757 0.85062 0.89395 0.88203 0.90260 0.89705 0.87967 0.90347 0.89878 0.90575 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.54 9.90 7.85 -10.99 -0.09 9.82 16 12 O -0.51 -11.65 15.55 5.56 0.09 -11.56 16 13 N -0.73 -9.42 5.22 -51.73 -0.27 -9.69 16 14 C 0.15 1.74 3.09 -65.78 -0.20 1.54 16 15 H 0.11 1.71 7.64 -51.93 -0.40 1.31 16 16 C 0.10 1.20 6.60 -2.53 -0.02 1.18 16 17 N -0.61 -6.55 3.33 -171.91 -0.57 -7.13 16 18 C 0.57 6.98 7.80 -12.67 -0.10 6.88 16 19 O -0.53 -8.59 15.41 5.26 0.08 -8.51 16 20 C -0.20 -1.76 9.54 -37.80 -0.36 -2.12 16 21 C -0.06 -0.49 6.93 -100.49 -0.70 -1.19 16 22 C -0.11 -0.91 6.99 -27.56 -0.19 -1.10 16 23 C -0.14 -0.81 8.17 -26.19 -0.21 -1.02 16 24 C -0.11 -0.57 7.96 -27.40 -0.22 -0.79 16 25 C 0.07 0.50 5.84 -3.06 -0.02 0.48 16 26 C 0.09 0.65 3.96 -24.90 -0.10 0.55 16 27 H 0.08 0.44 8.00 -51.93 -0.42 0.02 16 28 O -0.55 -4.27 13.40 -35.23 -0.47 -4.74 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 32 H 0.40 3.85 8.54 -40.82 -0.35 3.50 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.13 0.78 7.38 -52.49 -0.39 0.40 16 36 H 0.09 0.92 7.49 -51.93 -0.39 0.53 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 42 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 1.00 9.12 45.56 0.42 1.41 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -38.59 387.09 -9.30 -47.89 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.71 Total: 2.44 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.78 Total: -1.61 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.11 Total: -42.39 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.30 Total: -24.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.59 -9.30 -47.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512884042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.755 kcal (2) G-P(sol) polarization free energy of solvation -38.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds