Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46740 * 240.00043 * 3 2 1 5 5 H 1.48492 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47147 * 120.00118 * 3 2 1 7 7 C 1.38795 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99785 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00363 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00075 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47198 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00375 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00200 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.88857 * 34.29247 * 14 13 11 16 16 C 1.54915 * 111.03417 * 270.38731 * 14 13 11 17 17 N 1.47418 * 104.83107 * 204.89999 * 16 14 13 18 18 C 1.34773 * 125.64758 * 204.17202 * 17 16 14 19 19 O 1.21618 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.47104 * 120.00204 * 179.97438 * 18 17 16 21 21 C 1.32997 * 120.00409 * 180.02562 * 20 18 17 22 22 C 1.51404 * 136.31096 * 359.63390 * 21 20 18 23 23 C 1.53380 * 87.51351 * 206.05302 * 22 21 20 24 24 C 1.51401 * 136.31938 * 179.97438 * 21 20 18 25 25 C 1.47029 * 108.70495 * 24.13113 * 17 16 14 26 26 C 1.54327 * 107.26790 * 358.93814 * 25 17 16 27 27 H 1.09001 * 110.71543 * 96.16961 * 26 25 17 28 28 O 1.42897 * 110.86707 * 219.37089 * 26 25 17 29 29 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47499 * 59.99859 * 10 9 7 31 31 H 1.08997 * 109.47031 * 299.99545 * 10 9 7 32 32 H 0.97001 * 119.99748 * 359.97438 * 13 11 10 33 33 H 1.08995 * 110.36257 * 323.74273 * 16 14 13 34 34 H 1.08997 * 110.36405 * 86.05992 * 16 14 13 35 35 H 1.08002 * 119.99530 * 0.02562 * 20 18 17 36 36 H 1.09001 * 113.56186 * 320.62754 * 22 21 20 37 37 H 1.08995 * 113.56555 * 91.37339 * 22 21 20 38 38 H 1.09003 * 113.97132 * 220.29107 * 23 22 21 39 39 H 1.09006 * 113.60034 * 88.79397 * 23 22 21 40 40 H 1.09000 * 113.56405 * 268.63445 * 24 21 20 41 41 H 1.09008 * 113.55709 * 39.28702 * 24 21 20 42 42 H 1.08993 * 109.88066 * 239.51797 * 25 17 16 43 43 H 1.09003 * 109.87770 * 118.35455 * 25 17 16 44 44 H 0.96693 * 114.00497 * 293.61342 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8440 -6.3431 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 1 1.4066 -7.7837 -0.5767 16 6 2.1246 -8.2331 1.4435 17 7 2.2167 -9.7004 1.3352 18 6 1.6698 -10.5870 2.1904 19 8 1.0359 -10.1938 3.1509 20 6 1.8396 -12.0302 1.9619 21 6 1.2994 -12.9051 2.8055 22 6 0.4758 -12.8377 4.0741 23 6 1.0512 -14.2113 4.4412 24 6 1.2389 -14.4129 2.9292 25 6 3.0032 -10.0365 0.1393 26 6 3.3950 -8.7072 -0.5398 27 1 4.3961 -8.4000 -0.2371 28 8 3.3103 -8.8178 -1.9620 29 1 -0.4850 0.8400 0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1243 -3.7314 -0.8905 32 1 3.8008 -6.1835 -0.0004 33 1 2.9077 -7.8510 2.0983 34 1 1.1424 -7.9410 1.8149 35 1 2.4028 -12.3793 1.1091 36 1 0.7848 -12.0424 4.7524 37 1 -0.5995 -12.8491 3.8966 38 1 0.3254 -14.8902 4.8890 39 1 1.9868 -14.1579 4.9981 40 1 0.3728 -14.8560 2.4378 41 1 2.1733 -14.9093 2.6672 42 1 2.4022 -10.6381 -0.5425 43 1 3.9005 -10.5841 0.4276 44 1 3.9549 -9.4263 -2.3482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001512884042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = -99.938020 kcal Electronic energy + Delta-G solvation = -26168.945506 eV Core-core repulsion = 22212.736292 eV Total energy + Delta-G solvation = -3956.209214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60061 -40.61322 -39.61911 -38.74328 -36.60071 -35.44443 -34.58519 -32.50911 -31.41849 -29.99688 -29.09642 -27.65772 -26.70368 -25.35715 -23.60827 -22.45272 -21.88587 -20.99367 -19.89904 -18.94560 -18.65267 -18.42398 -17.77458 -17.34239 -16.90253 -16.87440 -16.54902 -16.35473 -16.26530 -15.86086 -15.38204 -15.21554 -15.00418 -14.71380 -14.44750 -14.36231 -13.88267 -13.72594 -13.46870 -13.35815 -13.25146 -13.17220 -12.93775 -12.86124 -12.65256 -12.63002 -11.96495 -11.86574 -11.72455 -11.61535 -11.33753 -11.12899 -11.00776 -10.80046 -10.36720 -10.28266 -10.26037 -9.72879 -8.67855 -8.34430 -6.13237 0.29789 1.22982 1.43494 1.44209 1.50942 1.54489 1.73188 2.18328 2.24222 2.27767 2.99594 3.00048 3.11863 3.28850 3.42652 3.51042 3.56081 3.80644 3.87333 3.96980 4.06941 4.09737 4.20568 4.24056 4.30356 4.49489 4.54541 4.57134 4.61430 4.69510 4.72630 4.79079 4.84382 4.87576 5.01830 5.04760 5.22966 5.33149 5.34433 5.41522 5.62506 6.19571 6.36927 6.41222 6.89912 7.04857 7.06461 7.16935 8.74613 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.001913 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.192068 B =14631.127039 C =15508.375556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.127 4.127 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.698 5.698 14 C 0.140 3.860 15 H 0.078 0.922 16 C 0.101 3.899 17 N -0.613 5.613 18 C 0.554 3.446 19 O -0.589 6.589 20 C -0.205 4.205 21 C -0.067 4.067 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.091 4.091 25 C 0.073 3.927 26 C 0.105 3.895 27 H 0.118 0.882 28 O -0.566 6.566 29 H 0.271 0.729 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.422 0.578 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.169 0.831 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.863 -32.569 0.827 35.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.071 5.929 10 C -0.278 4.278 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.352 5.352 14 C 0.033 3.967 15 H 0.096 0.904 16 C -0.024 4.024 17 N -0.347 5.347 18 C 0.348 3.652 19 O -0.471 6.471 20 C -0.225 4.225 21 C -0.069 4.069 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.128 4.128 25 C -0.050 4.050 26 C 0.044 3.956 27 H 0.136 0.864 28 O -0.375 6.375 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.261 0.739 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.186 0.814 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 11.918 -32.237 1.429 34.399 hybrid contribution 1.840 1.488 0.095 2.368 sum 13.757 -30.749 1.524 33.721 Atomic orbital electron populations 1.70187 1.08057 1.28669 1.47974 1.26164 0.95970 1.03437 0.93730 0.84979 0.77762 0.75548 0.79547 1.18482 1.20521 1.18637 1.23179 0.95412 0.91831 1.58937 0.89645 1.85674 1.10696 0.99458 1.97080 1.23354 1.03568 0.93715 1.07193 1.20192 0.86199 0.86851 0.74519 1.90718 1.17668 1.86037 1.49709 1.45447 1.10471 1.03646 1.75642 1.21892 0.99009 0.81355 0.94461 0.90401 1.22435 1.02160 0.80684 0.97152 1.48168 1.53700 1.05611 1.27246 1.18877 0.77779 0.87594 0.80996 1.90789 1.43169 1.81501 1.31657 1.21609 1.09301 0.88609 1.02965 1.23993 0.91544 0.98566 0.92796 1.22381 0.99905 0.98932 0.95114 1.22735 1.02129 0.95679 0.96515 1.22376 1.04818 0.89364 0.96209 1.23071 0.97499 0.98198 0.86198 1.22936 0.98517 0.92091 0.82021 0.86421 1.86623 1.63179 1.69571 1.18132 0.92030 0.86757 0.86736 0.73902 0.89519 0.93421 0.81413 0.92520 0.88519 0.88715 0.89457 0.86430 0.88128 0.88840 0.86386 0.74084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.55 -31.37 9.50 67.95 0.65 -30.72 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 9 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.54 20.10 7.85 87.66 0.69 20.79 16 12 O -0.56 -27.26 15.55 -3.03 -0.05 -27.30 16 13 N -0.70 -17.29 5.22 -435.96 -2.27 -19.56 16 14 C 0.14 3.28 3.09 46.38 0.14 3.42 16 15 H 0.08 2.46 7.64 -2.39 -0.02 2.44 16 16 C 0.10 2.57 6.60 86.86 0.57 3.14 16 17 N -0.61 -12.72 3.33 -816.05 -2.71 -15.43 16 18 C 0.55 13.88 7.80 86.57 0.67 14.56 16 19 O -0.59 -20.59 15.41 -4.09 -0.06 -20.65 16 20 C -0.20 -3.30 9.54 23.43 0.22 -3.08 16 21 C -0.07 -1.04 6.93 -17.17 -0.12 -1.16 16 22 C -0.13 -2.22 6.99 30.06 0.21 -2.01 16 23 C -0.13 -1.30 8.17 30.95 0.25 -1.05 16 24 C -0.09 -0.69 7.96 30.16 0.24 -0.45 16 25 C 0.07 0.73 5.84 86.73 0.51 1.23 16 26 C 0.10 1.21 3.96 31.78 0.13 1.34 16 27 H 0.12 0.61 8.00 -2.39 -0.02 0.59 16 28 O -0.57 -6.90 13.40 -148.98 -2.00 -8.89 16 29 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 31 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 32 H 0.42 6.79 8.54 -92.71 -0.79 6.00 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.65 8.04 -2.39 -0.02 1.63 16 35 H 0.17 1.34 7.38 -2.91 -0.02 1.32 16 36 H 0.06 1.33 7.49 -2.39 -0.02 1.31 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.81 8.14 -2.38 -0.02 0.80 16 40 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.09 0.80 8.06 -2.39 -0.02 0.79 16 43 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.41 0.29 9.12 -74.06 -0.68 -0.39 16 Total: -1.00 -92.84 387.09 -1.30 -94.15 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.43 Total: 15.84 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.07 Total: 2.57 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.70 Total: -91.63 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.11 Total: -56.85 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -92.84 -1.30 -94.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512884042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.792 kcal (2) G-P(sol) polarization free energy of solvation -92.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds