Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.85056 * 25.34023 * 14 13 11 16 16 C 1.53784 * 113.61126 * 156.53132 * 14 13 11 17 17 C 1.53786 * 87.07801 * 139.98073 * 16 14 13 18 18 H 1.09004 * 113.61204 * 220.01761 * 17 16 14 19 19 N 1.46496 * 113.61264 * 89.20378 * 17 16 14 20 20 C 1.34776 * 120.00316 * 154.99734 * 19 17 16 21 21 O 1.21622 * 120.00012 * 0.02562 * 20 19 17 22 22 C 1.47100 * 120.00632 * 179.97438 * 20 19 17 23 23 C 1.32087 * 118.88119 * 180.02562 * 22 20 19 24 24 C 1.50268 * 122.57982 * 180.37368 * 23 22 20 25 25 O 1.42899 * 110.09103 * 344.34486 * 24 23 22 26 26 C 1.43272 * 113.09572 * 50.53565 * 25 24 23 27 27 C 1.50425 * 118.87486 * 359.73143 * 22 20 19 28 28 C 1.53787 * 113.61653 * 254.13757 * 14 13 11 29 29 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 31 31 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 33 33 H 1.08998 * 113.61799 * 254.52676 * 16 14 13 34 34 H 1.09002 * 113.61654 * 25.43637 * 16 14 13 35 35 H 0.96999 * 120.00165 * 334.99741 * 19 17 16 36 36 H 1.07999 * 118.70827 * 0.34174 * 23 22 20 37 37 H 1.09000 * 109.37093 * 104.53753 * 24 23 22 38 38 H 1.08997 * 109.36513 * 224.28510 * 24 23 22 39 39 H 1.08996 * 109.64544 * 50.84940 * 26 25 24 40 40 H 1.09008 * 109.63671 * 171.26507 * 26 25 24 41 41 H 1.09001 * 109.45272 * 283.38158 * 27 22 20 42 42 H 1.09003 * 109.44956 * 43.31524 * 27 22 20 43 43 H 1.08995 * 113.61076 * 334.57310 * 28 14 13 44 44 H 1.08995 * 113.61025 * 105.47189 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4948 -0.0030 14 6 7.4907 -4.7357 -0.0026 15 1 8.0574 -3.9101 0.4279 16 6 7.8855 -6.1123 0.5581 17 6 8.9352 -6.1806 -0.5637 18 1 9.0262 -7.1677 -1.0169 19 7 10.2295 -5.6038 -0.1920 20 6 11.3530 -6.0120 -0.8146 21 8 11.2922 -6.8590 -1.6853 22 6 12.6527 -5.4325 -0.4418 23 6 13.7395 -5.8485 -1.0667 24 6 15.1092 -5.3196 -0.7470 25 8 15.0047 -4.1126 0.0109 26 6 14.1358 -4.2337 1.1436 27 6 12.6978 -4.3815 0.6334 28 6 8.0356 -5.2163 -1.3580 29 1 -0.4850 0.8400 0.0004 30 1 3.6434 -3.4310 -0.8927 31 1 3.6440 -3.4322 0.8873 32 1 5.4291 -5.2435 -0.0036 33 1 8.3172 -6.0690 1.5580 34 1 7.0999 -6.8624 0.4672 35 1 10.2780 -4.9281 0.5022 36 1 13.6398 -6.5985 -1.8374 37 1 15.6579 -6.0631 -0.1689 38 1 15.6438 -5.1164 -1.6749 39 1 14.4141 -5.1114 1.7268 40 1 14.2162 -3.3410 1.7640 41 1 12.3532 -3.4308 0.2265 42 1 12.0507 -4.6786 1.4588 43 1 7.2911 -5.7210 -1.9737 44 1 8.5882 -4.4508 -1.9026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720792335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -83.401695 kcal Electronic energy + Delta-G solvation = -25996.764260 eV Core-core repulsion = 22041.272115 eV Total energy + Delta-G solvation = -3955.492146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99213 -40.00641 -39.07692 -38.01745 -34.53501 -34.08874 -32.57565 -32.45144 -31.51824 -29.33202 -26.82376 -26.10264 -25.65579 -24.81231 -23.99352 -22.12317 -20.66896 -19.93993 -19.01510 -18.08242 -17.86534 -16.99248 -16.75409 -16.46803 -15.99949 -15.77203 -15.72127 -15.19937 -15.08036 -14.99103 -14.51116 -14.15541 -13.98234 -13.89719 -13.42581 -13.33459 -13.03779 -12.93743 -12.86678 -12.81001 -12.33996 -12.12662 -12.07603 -11.37416 -11.28882 -11.15899 -11.02616 -10.95448 -10.64558 -10.58472 -10.05414 -9.87632 -9.68690 -9.57384 -9.43009 -9.03762 -8.97954 -8.52952 -6.94402 -6.30881 -4.02893 0.83526 2.66336 2.73708 2.80006 2.89003 3.28588 3.32404 3.32858 3.48444 3.63218 4.04658 4.07279 4.14377 4.23790 4.28785 4.31187 4.59546 4.64169 4.68048 4.69485 4.71570 4.80195 4.94919 5.03715 5.08161 5.13615 5.17093 5.29052 5.33594 5.36106 5.41672 5.54429 5.71791 5.72998 5.75176 5.79200 5.91654 5.97989 6.17342 6.50670 6.51054 7.06889 7.55426 7.79101 7.92095 8.39513 8.43144 9.15201 10.78302 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.001875 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.153516 B =14932.866297 C =15940.584064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.726 5.726 14 C 0.126 3.874 15 H 0.112 0.888 16 C -0.152 4.152 17 C 0.122 3.878 18 H 0.109 0.891 19 N -0.707 5.707 20 C 0.556 3.444 21 O -0.540 6.540 22 C -0.169 4.169 23 C -0.110 4.110 24 C 0.083 3.917 25 O -0.376 6.376 26 C 0.060 3.940 27 C -0.122 4.122 28 C -0.164 4.164 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.403 0.597 36 H 0.137 0.863 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.660 -16.046 2.719 32.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.379 5.379 14 C 0.021 3.979 15 H 0.130 0.870 16 C -0.191 4.191 17 C 0.016 3.984 18 H 0.127 0.873 19 N -0.358 5.358 20 C 0.345 3.655 21 O -0.419 6.419 22 C -0.172 4.172 23 C -0.130 4.130 24 C 0.007 3.993 25 O -0.295 6.295 26 C -0.017 4.017 27 C -0.159 4.159 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.239 0.761 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 28.795 -14.796 2.067 32.440 hybrid contribution -1.473 -0.625 0.289 1.626 sum 27.323 -15.422 2.356 31.463 Atomic orbital electron populations 1.69937 1.05910 1.27783 1.47999 1.24720 0.94460 0.98977 0.93173 0.86729 0.81868 0.83271 0.79947 1.19203 1.19930 1.15945 1.22314 0.88251 0.97540 1.58856 0.89386 1.84785 1.09320 1.00026 1.97430 1.23293 0.94011 1.04452 1.05836 1.20341 0.90613 0.82433 0.74814 1.90691 1.58793 1.42222 1.47677 1.45938 1.06817 1.08079 1.77110 1.22493 0.82203 0.96906 0.96342 0.86978 1.23745 0.98582 0.97770 0.98972 1.21730 0.81637 0.98384 0.96675 0.87265 1.45608 1.06013 1.43354 1.40852 1.18406 0.84256 0.81607 0.81240 1.90796 1.87018 1.32638 1.31420 1.20845 0.93242 1.01422 1.01693 1.23752 0.94528 0.97683 0.97014 1.21629 0.93256 0.87345 0.97050 1.88170 1.66635 1.33802 1.40846 1.22704 0.88004 1.02933 0.88062 1.21142 0.99230 0.98410 0.97150 1.23994 0.99091 0.99543 0.97766 0.91926 0.88466 0.88426 0.76452 0.90094 0.87957 0.76122 0.84565 0.90702 0.86832 0.92361 0.87808 0.88955 0.89589 0.88550 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 10 C -0.13 -2.35 6.16 36.01 0.22 -2.13 16 11 C 0.53 8.98 7.85 -10.98 -0.09 8.90 16 12 O -0.52 -10.75 15.48 5.56 0.09 -10.67 16 13 N -0.73 -8.39 5.36 -53.01 -0.28 -8.68 16 14 C 0.13 1.24 4.09 -67.11 -0.27 0.97 16 15 H 0.11 1.26 7.50 -51.93 -0.39 0.87 16 16 C -0.15 -1.01 7.58 -25.91 -0.20 -1.21 16 17 C 0.12 0.99 4.33 -67.03 -0.29 0.70 16 18 H 0.11 0.98 7.46 -51.93 -0.39 0.60 16 19 N -0.71 -5.61 5.21 -54.11 -0.28 -5.89 16 20 C 0.56 5.54 7.73 -12.67 -0.10 5.44 16 21 O -0.54 -7.25 15.66 5.26 0.08 -7.17 16 22 C -0.17 -1.33 5.86 -103.08 -0.60 -1.93 16 23 C -0.11 -0.80 9.58 -36.44 -0.35 -1.14 16 24 C 0.08 0.46 7.04 35.80 0.25 0.71 16 25 O -0.38 -2.82 10.83 -35.23 -0.38 -3.20 16 26 C 0.06 0.32 6.89 37.31 0.26 0.57 16 27 C -0.12 -0.69 5.31 -27.86 -0.15 -0.83 16 28 C -0.16 -1.56 7.69 -25.83 -0.20 -1.76 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.40 3.47 8.71 -40.82 -0.36 3.11 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.55 8.11 -51.93 -0.42 0.13 16 35 H 0.40 2.42 7.00 -40.82 -0.29 2.13 16 36 H 0.14 1.05 7.29 -52.49 -0.38 0.66 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.25 8.09 -51.93 -0.42 -0.17 16 40 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.33 7.30 -51.93 -0.38 -0.05 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -36.96 380.47 -8.68 -45.64 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.40 Total: 2.10 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.30 Total: -3.64 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.21 Total: -40.19 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.21 Total: -21.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.96 -8.68 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720792335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.759 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds