Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.85056 * 25.34023 * 14 13 11 16 16 C 1.53784 * 113.61126 * 156.53132 * 14 13 11 17 17 C 1.53786 * 87.07801 * 139.98073 * 16 14 13 18 18 H 1.09004 * 113.61204 * 220.01761 * 17 16 14 19 19 N 1.46496 * 113.61264 * 89.20378 * 17 16 14 20 20 C 1.34776 * 120.00316 * 154.99734 * 19 17 16 21 21 O 1.21622 * 120.00012 * 0.02562 * 20 19 17 22 22 C 1.47100 * 120.00632 * 179.97438 * 20 19 17 23 23 C 1.32087 * 118.88119 * 180.02562 * 22 20 19 24 24 C 1.50268 * 122.57982 * 180.37368 * 23 22 20 25 25 O 1.42899 * 110.09103 * 344.34486 * 24 23 22 26 26 C 1.43272 * 113.09572 * 50.53565 * 25 24 23 27 27 C 1.50425 * 118.87486 * 359.73143 * 22 20 19 28 28 C 1.53787 * 113.61653 * 254.13757 * 14 13 11 29 29 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 31 31 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 33 33 H 1.08998 * 113.61799 * 254.52676 * 16 14 13 34 34 H 1.09002 * 113.61654 * 25.43637 * 16 14 13 35 35 H 0.96999 * 120.00165 * 334.99741 * 19 17 16 36 36 H 1.07999 * 118.70827 * 0.34174 * 23 22 20 37 37 H 1.09000 * 109.37093 * 104.53753 * 24 23 22 38 38 H 1.08997 * 109.36513 * 224.28510 * 24 23 22 39 39 H 1.08996 * 109.64544 * 50.84940 * 26 25 24 40 40 H 1.09008 * 109.63671 * 171.26507 * 26 25 24 41 41 H 1.09001 * 109.45272 * 283.38158 * 27 22 20 42 42 H 1.09003 * 109.44956 * 43.31524 * 27 22 20 43 43 H 1.08995 * 113.61076 * 334.57310 * 28 14 13 44 44 H 1.08995 * 113.61025 * 105.47189 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4948 -0.0030 14 6 7.4907 -4.7357 -0.0026 15 1 8.0574 -3.9101 0.4279 16 6 7.8855 -6.1123 0.5581 17 6 8.9352 -6.1806 -0.5637 18 1 9.0262 -7.1677 -1.0169 19 7 10.2295 -5.6038 -0.1920 20 6 11.3530 -6.0120 -0.8146 21 8 11.2922 -6.8590 -1.6853 22 6 12.6527 -5.4325 -0.4418 23 6 13.7395 -5.8485 -1.0667 24 6 15.1092 -5.3196 -0.7470 25 8 15.0047 -4.1126 0.0109 26 6 14.1358 -4.2337 1.1436 27 6 12.6978 -4.3815 0.6334 28 6 8.0356 -5.2163 -1.3580 29 1 -0.4850 0.8400 0.0004 30 1 3.6434 -3.4310 -0.8927 31 1 3.6440 -3.4322 0.8873 32 1 5.4291 -5.2435 -0.0036 33 1 8.3172 -6.0690 1.5580 34 1 7.0999 -6.8624 0.4672 35 1 10.2780 -4.9281 0.5022 36 1 13.6398 -6.5985 -1.8374 37 1 15.6579 -6.0631 -0.1689 38 1 15.6438 -5.1164 -1.6749 39 1 14.4141 -5.1114 1.7268 40 1 14.2162 -3.3410 1.7640 41 1 12.3532 -3.4308 0.2265 42 1 12.0507 -4.6786 1.4588 43 1 7.2911 -5.7210 -1.9737 44 1 8.5882 -4.4508 -1.9026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720792335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -111.630301 kcal Electronic energy + Delta-G solvation = -25997.988345 eV Core-core repulsion = 22041.272115 eV Total energy + Delta-G solvation = -3956.716230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73904 -40.85329 -39.89099 -38.95751 -35.38874 -34.82329 -34.66967 -33.47136 -31.98606 -30.72645 -27.87389 -27.38094 -26.78325 -25.50792 -24.57339 -22.79091 -21.91095 -20.75048 -19.87537 -19.57088 -18.62942 -17.93249 -17.75946 -17.35227 -17.09331 -16.77037 -16.53228 -16.34200 -16.26616 -15.84961 -15.76954 -15.22547 -15.02479 -14.82185 -14.57362 -14.52755 -14.03633 -13.71558 -13.57344 -13.45257 -13.39382 -13.33728 -13.17744 -13.01324 -12.62014 -12.53909 -11.95784 -11.90111 -11.86072 -11.62439 -11.26961 -11.17415 -10.97307 -10.62130 -10.53486 -10.32803 -10.13135 -9.97304 -8.99451 -8.51742 -6.22374 0.22199 0.99578 1.31327 1.46642 1.55099 1.56414 2.01000 2.11262 2.23264 2.28021 2.72267 2.86527 2.92467 3.35413 3.49413 3.55070 3.67021 3.83696 3.84339 3.88697 4.00836 4.24299 4.25061 4.27931 4.42726 4.47231 4.49073 4.55419 4.65674 4.70348 4.75322 4.80141 4.84917 4.95006 4.97184 4.98196 5.21683 5.36666 5.42586 5.58966 5.70456 6.09903 6.11277 6.41101 6.49556 6.93508 7.08519 7.20920 8.60544 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.001875 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.153516 B =14932.866297 C =15940.584064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.113 4.113 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.700 5.700 14 C 0.117 3.883 15 H 0.099 0.901 16 C -0.126 4.126 17 C 0.123 3.877 18 H 0.104 0.896 19 N -0.698 5.698 20 C 0.552 3.448 21 O -0.583 6.583 22 C -0.184 4.184 23 C -0.107 4.107 24 C 0.083 3.917 25 O -0.398 6.398 26 C 0.056 3.944 27 C -0.119 4.119 28 C -0.165 4.165 29 H 0.277 0.723 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.419 0.581 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.413 0.587 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.174 -16.968 3.836 33.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.264 4.264 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.353 5.353 14 C 0.012 3.988 15 H 0.117 0.883 16 C -0.165 4.165 17 C 0.017 3.983 18 H 0.122 0.878 19 N -0.349 5.349 20 C 0.341 3.659 21 O -0.465 6.465 22 C -0.187 4.187 23 C -0.127 4.127 24 C 0.007 3.993 25 O -0.317 6.317 26 C -0.020 4.020 27 C -0.156 4.156 28 C -0.205 4.205 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.257 0.743 33 H 0.117 0.883 34 H 0.144 0.856 35 H 0.251 0.749 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.104 0.896 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 30.297 -15.758 3.212 34.301 hybrid contribution -1.904 -0.519 -0.107 1.977 sum 28.392 -16.278 3.105 32.874 Atomic orbital electron populations 1.70016 1.07296 1.29005 1.49141 1.25574 0.95283 1.02275 0.92931 0.85863 0.80720 0.79615 0.80149 1.18854 1.18355 1.15962 1.22468 0.90310 0.96669 1.58216 0.91941 1.84708 1.06361 1.06398 1.97587 1.23296 0.96103 0.99493 1.07487 1.19987 0.89292 0.83652 0.74907 1.90684 1.59285 1.43900 1.50233 1.45715 1.08149 1.06700 1.74763 1.22683 0.80530 0.98408 0.97149 0.88298 1.23673 0.98087 0.95628 0.99079 1.21698 0.81802 0.97599 0.97240 0.87785 1.45574 1.05628 1.43136 1.40556 1.18802 0.85339 0.81061 0.80651 1.90769 1.87679 1.34656 1.33355 1.20946 0.92314 1.02462 1.02968 1.23929 0.95518 0.97036 0.96185 1.21794 0.92293 0.87328 0.97873 1.88140 1.67122 1.34810 1.41638 1.22873 0.87263 1.04196 0.87711 1.21171 1.00131 0.97282 0.96995 1.24011 0.99479 0.99383 0.97609 0.91389 0.86981 0.86633 0.74329 0.88346 0.85638 0.74893 0.85538 0.88643 0.85584 0.91095 0.86552 0.89585 0.87663 0.87749 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.52 13.97 21.65 0.30 -55.22 16 2 C 0.04 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.91 44.74 27.74 68.60 1.90 46.64 16 4 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 7 C -0.53 -30.50 10.04 67.96 0.68 -29.82 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 9 S -0.18 -8.80 18.55 -56.49 -1.05 -9.84 16 10 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 11 C 0.54 17.22 7.85 87.66 0.69 17.91 16 12 O -0.56 -22.91 15.48 -3.03 -0.05 -22.95 16 13 N -0.70 -14.34 5.36 -440.02 -2.36 -16.70 16 14 C 0.12 2.05 4.09 45.52 0.19 2.23 16 15 H 0.10 2.08 7.50 -2.39 -0.02 2.06 16 16 C -0.13 -1.25 7.58 31.12 0.24 -1.01 16 17 C 0.12 1.78 4.33 45.58 0.20 1.98 16 18 H 0.10 1.72 7.46 -2.38 -0.02 1.70 16 19 N -0.70 -10.24 5.21 -443.36 -2.31 -12.55 16 20 C 0.55 10.79 7.73 86.57 0.67 11.46 16 21 O -0.58 -15.85 15.66 -4.10 -0.06 -15.91 16 22 C -0.18 -2.77 5.86 -18.58 -0.11 -2.88 16 23 C -0.11 -1.49 9.58 24.59 0.24 -1.26 16 24 C 0.08 0.80 7.04 71.10 0.50 1.30 16 25 O -0.40 -5.40 10.83 -148.98 -1.61 -7.01 16 26 C 0.06 0.49 6.89 72.08 0.50 0.99 16 27 C -0.12 -1.17 5.31 29.86 0.16 -1.01 16 28 C -0.16 -2.92 7.69 31.18 0.24 -2.68 16 29 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.42 5.72 8.71 -92.71 -0.81 4.91 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.13 0.76 8.11 -2.39 -0.02 0.74 16 35 H 0.41 4.28 7.00 -92.71 -0.65 3.63 16 36 H 0.13 1.99 7.29 -2.91 -0.02 1.97 16 37 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 40 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 0.57 7.30 -2.39 -0.02 0.56 16 43 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -81.73 380.47 -0.60 -82.33 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.46 Total: 14.56 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.09 Total: -3.34 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -4.37 Total: -84.47 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.72 Total: -45.88 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.84 kcal Total: -81.73 -0.60 -82.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720792335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.300 kcal (2) G-P(sol) polarization free energy of solvation -81.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds