Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 120.00209 * 2 1 4 4 H 1.48494 * 109.47133 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47075 * 119.99749 * 3 2 1 6 6 H 1.48506 * 109.46554 * 239.99778 * 3 2 1 7 7 C 1.38801 * 119.99538 * 180.26788 * 2 1 3 8 8 H 1.08010 * 119.99718 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99949 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47335 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99511 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00082 * 179.97438 * 11 10 9 14 14 C 1.47062 * 136.05936 * 354.96438 * 13 11 10 15 15 C 1.53493 * 87.98561 * 152.84046 * 14 13 11 16 16 C 1.47066 * 136.05242 * 174.59050 * 13 11 10 17 17 H 1.09003 * 113.46731 * 92.38196 * 16 13 11 18 18 C 1.52995 * 113.47047 * 321.93704 * 16 13 11 19 19 N 1.46504 * 109.47099 * 175.82749 * 18 16 13 20 20 C 1.34780 * 120.00162 * 184.96787 * 19 18 16 21 21 O 1.21274 * 119.99808 * 359.97438 * 20 19 18 22 22 C 1.50694 * 119.99897 * 179.97438 * 20 19 18 23 23 C 1.53004 * 119.80561 * 248.96867 * 22 20 19 24 24 C 1.54513 * 122.36320 * 176.59312 * 22 20 19 25 25 H 1.09000 * 122.36665 * 359.45724 * 24 22 20 26 26 C 1.54481 * 104.06419 * 223.21576 * 24 22 20 27 27 O 1.44422 * 104.80162 * 336.02302 * 26 24 22 28 28 C 1.44423 * 105.27690 * 40.51058 * 27 26 24 29 29 H 0.97005 * 119.99576 * 359.72933 * 1 2 3 30 30 H 1.09004 * 109.47283 * 299.99806 * 10 9 7 31 31 H 1.08998 * 109.47099 * 60.00148 * 10 9 7 32 32 H 1.08997 * 113.46863 * 267.62700 * 14 13 11 33 33 H 1.09004 * 113.46595 * 38.06616 * 14 13 11 34 34 H 1.09002 * 114.20617 * 139.65203 * 15 14 13 35 35 H 1.09000 * 114.20987 * 272.28592 * 15 14 13 36 36 H 1.08994 * 109.47632 * 295.82439 * 18 16 13 37 37 H 1.08999 * 109.47176 * 55.83219 * 18 16 13 38 38 H 0.96999 * 120.00216 * 4.95889 * 19 18 16 39 39 H 1.08992 * 117.43600 * 355.37721 * 23 22 20 40 40 H 1.09007 * 117.42807 * 140.01275 * 23 22 20 41 41 H 1.08993 * 110.37352 * 217.19416 * 26 24 22 42 42 H 1.09003 * 110.46313 * 94.89940 * 26 24 22 43 43 H 1.09007 * 110.37291 * 200.65300 * 28 27 26 44 44 H 1.09007 * 110.37194 * 78.31872 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 1.2855 2.7464 -0.0006 5 1 3.1041 1.6964 1.2125 6 1 3.1042 1.6962 -1.2126 7 6 2.0102 -1.2021 -0.0056 8 1 3.0903 -1.2021 -0.0052 9 16 1.1292 -2.7279 -0.0134 10 6 2.5157 -3.8914 -0.0194 11 6 1.9872 -5.3027 -0.0273 12 8 0.7909 -5.5022 -0.0292 13 7 2.8439 -6.3431 -0.0332 14 6 4.3018 -6.5139 -0.1239 15 6 4.1422 -7.8263 0.6558 16 6 2.7327 -7.8069 0.0548 17 1 2.6683 -8.2966 -0.9170 18 6 1.6508 -8.2783 1.0285 19 7 1.5474 -9.7387 0.9739 20 6 0.5875 -10.3731 1.6759 21 8 -0.1903 -9.7350 2.3530 22 6 0.4809 -11.8752 1.6192 23 6 -0.7134 -12.5269 0.9194 24 6 -0.5478 -12.6636 2.4605 25 1 -1.2417 -12.1733 3.1433 26 6 0.2541 -13.8680 3.0017 27 8 1.3434 -14.0354 2.0684 28 6 1.7825 -12.6965 1.7518 29 1 -0.4850 0.8401 0.0040 30 1 3.1243 -3.7269 -0.9086 31 1 3.1243 -3.7360 0.8714 32 1 4.6596 -6.6555 -1.1437 33 1 4.8626 -5.7524 0.4182 34 1 4.7725 -8.6395 0.2959 35 1 4.1676 -7.7086 1.7391 36 1 1.9135 -7.9704 2.0405 37 1 0.6942 -7.8358 0.7508 38 1 2.1697 -10.2491 0.4325 39 1 -1.4975 -11.8683 0.5460 40 1 -0.5191 -13.4137 0.3159 41 1 -0.3698 -14.7614 3.0209 42 1 0.6385 -13.6528 3.9988 43 1 2.3327 -12.6901 0.8108 44 1 2.4012 -12.2997 2.5568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722020377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -66.782346 kcal Electronic energy + Delta-G solvation = -26389.372859 eV Core-core repulsion = 22434.601383 eV Total energy + Delta-G solvation = -3954.771477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99167 -41.50117 -39.91191 -38.92423 -35.95890 -35.34174 -34.61811 -32.24139 -30.51071 -29.49129 -29.10733 -27.67721 -26.85327 -24.96038 -23.46154 -23.11919 -21.81167 -21.08162 -20.19612 -19.48213 -18.76655 -18.02315 -17.54637 -16.96295 -16.90220 -16.84453 -16.68330 -16.55098 -16.21337 -15.79496 -15.72488 -15.44596 -14.94609 -14.74369 -14.50409 -13.98911 -13.91331 -13.86212 -13.77452 -13.42119 -13.19247 -13.11149 -12.98243 -12.88275 -12.65596 -12.53474 -12.42054 -11.80702 -11.78477 -11.62874 -11.23627 -11.15635 -10.97028 -10.87110 -10.66927 -10.33054 -10.29428 -9.81536 -8.72543 -8.37266 -6.17135 1.15207 1.30236 1.38975 1.42401 1.51496 1.51674 1.73689 2.15391 2.24908 2.35766 2.81728 2.96621 3.17535 3.32421 3.34569 3.47940 3.62873 3.65259 3.73011 3.80568 3.96351 4.01822 4.07470 4.22054 4.41229 4.44037 4.46192 4.56632 4.60248 4.62426 4.65057 4.68663 4.71878 4.73890 4.80125 4.95872 4.98325 5.03349 5.19247 5.33268 5.37853 5.63296 6.16382 6.38104 6.58733 7.03129 7.06040 7.10805 8.71871 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.001939 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.940519 B =14438.902732 C =15199.415770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.279 1.279 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.567 6.567 13 N -0.651 5.651 14 C 0.094 3.906 15 C -0.124 4.124 16 C 0.121 3.879 17 H 0.123 0.877 18 C 0.120 3.880 19 N -0.697 5.697 20 C 0.554 3.446 21 O -0.588 6.588 22 C -0.218 4.218 23 C -0.095 4.095 24 C -0.172 4.172 25 H 0.120 0.880 26 C 0.073 3.927 27 O -0.378 6.378 28 C 0.090 3.910 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.422 0.578 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.731 -30.581 0.927 33.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.204 1.204 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.267 4.267 11 C 0.345 3.655 12 O -0.446 6.446 13 N -0.389 5.389 14 C -0.027 4.027 15 C -0.162 4.162 16 C 0.017 3.983 17 H 0.141 0.859 18 C -0.006 4.006 19 N -0.350 5.350 20 C 0.341 3.659 21 O -0.467 6.467 22 C -0.222 4.222 23 C -0.132 4.132 24 C -0.191 4.191 25 H 0.138 0.862 26 C -0.003 4.003 27 O -0.297 6.297 28 C 0.013 3.987 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.261 0.739 39 H 0.118 0.882 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.146 0.854 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.253 -30.320 1.317 32.367 hybrid contribution 0.957 1.937 0.008 2.161 sum 12.210 -28.382 1.325 30.926 Atomic orbital electron populations 1.70194 1.08081 1.28741 1.47829 1.26198 0.96010 1.03497 0.93634 0.84958 0.77766 0.75383 0.79599 1.20381 1.18561 1.18433 1.23152 0.95321 0.91755 1.59166 0.89793 1.85664 1.10699 0.99501 1.97053 1.23246 1.03303 0.93827 1.06335 1.19725 0.85161 0.85682 0.74945 1.90711 1.17270 1.85629 1.50972 1.49816 1.10513 1.05498 1.73035 1.23372 0.78456 0.98029 1.02802 1.23526 0.92984 0.98580 1.01061 1.23125 0.95596 0.80006 0.99530 0.85900 1.21339 0.99305 0.80393 0.99530 1.45487 1.33825 1.06577 1.49091 1.19641 0.79644 0.88402 0.78167 1.90751 1.43956 1.68846 1.43196 1.23185 0.96189 0.90309 1.12487 1.23368 0.94881 1.01733 0.93192 1.24720 1.00858 0.98518 0.95022 0.86237 1.23096 0.86932 0.97512 0.92757 1.89168 1.51159 1.25642 1.63724 1.22956 0.91708 0.80673 1.03389 0.91959 0.87466 0.87735 0.86655 0.89343 0.84046 0.88747 0.92389 0.94519 0.73914 0.88200 0.85255 0.86305 0.90223 0.85373 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.21 13.22 21.65 0.29 -56.93 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.79 9.50 67.95 0.65 -31.15 16 8 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -9.02 20.57 -56.49 -1.16 -10.18 16 10 C -0.12 -4.83 5.99 71.24 0.43 -4.40 16 11 C 0.56 21.91 7.97 87.66 0.70 22.61 16 12 O -0.57 -28.33 15.47 -3.05 -0.05 -28.38 16 13 N -0.65 -16.77 3.57 -834.23 -2.98 -19.75 16 14 C 0.09 1.23 8.42 83.18 0.70 1.93 16 15 C -0.12 -1.01 8.00 30.84 0.25 -0.77 16 16 C 0.12 2.08 4.06 41.70 0.17 2.25 16 17 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 18 C 0.12 2.95 5.47 86.38 0.47 3.42 16 19 N -0.70 -12.00 5.51 -463.08 -2.55 -14.55 16 20 C 0.55 12.88 7.51 87.65 0.66 13.54 16 21 O -0.59 -20.74 16.84 -3.01 -0.05 -20.80 16 22 C -0.22 -3.37 2.81 -51.91 -0.15 -3.51 16 23 C -0.09 -1.32 9.84 31.49 0.31 -1.01 16 24 C -0.17 -2.62 7.04 -8.88 -0.06 -2.68 16 25 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 26 C 0.07 0.80 7.54 72.49 0.55 1.35 16 27 O -0.38 -4.84 11.32 -148.98 -1.69 -6.53 16 28 C 0.09 0.87 6.97 72.48 0.51 1.37 16 29 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 30 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.14 -0.09 8.14 -2.39 -0.02 -0.10 16 35 H 0.09 0.93 7.94 -2.39 -0.02 0.92 16 36 H 0.06 1.59 7.88 -2.39 -0.02 1.58 16 37 H 0.04 1.34 7.15 -2.39 -0.02 1.32 16 38 H 0.42 3.21 8.24 -92.71 -0.76 2.45 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.13 1.29 8.07 -2.38 -0.02 1.27 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -93.22 387.11 -0.27 -93.49 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.26 Total: 13.49 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.64 Total: 4.06 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -5.24 Total: -91.22 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -1.79 Total: -55.70 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -93.22 -0.27 -93.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722020377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.710 kcal (2) G-P(sol) polarization free energy of solvation -93.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds