Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47242 * 239.99819 * 3 2 1 5 5 H 1.48500 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47073 * 119.99921 * 3 2 1 7 7 C 1.38802 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99881 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99882 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00044 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99892 * 179.97438 * 11 10 9 14 14 C 1.47061 * 136.06007 * 354.65221 * 13 11 10 15 15 C 1.53234 * 88.08239 * 207.20218 * 14 13 11 16 16 C 1.47070 * 136.05650 * 175.01744 * 13 11 10 17 17 H 1.08998 * 113.46855 * 267.68766 * 16 13 11 18 18 C 1.53000 * 113.46620 * 38.06736 * 16 13 11 19 19 N 1.46493 * 109.47134 * 184.10523 * 18 16 13 20 20 C 1.34783 * 120.00435 * 184.98139 * 19 18 16 21 21 O 1.21280 * 119.99231 * 359.97438 * 20 19 18 22 22 C 1.50693 * 120.00044 * 179.97438 * 20 19 18 23 23 C 1.53004 * 119.81003 * 250.22583 * 22 20 19 24 24 C 1.52998 * 60.65770 * 247.69432 * 23 22 20 25 25 H 1.09000 * 119.80935 * 112.30520 * 24 23 22 26 26 C 1.54469 * 118.06682 * 269.59237 * 24 23 22 27 27 O 1.44423 * 104.80503 * 86.82635 * 26 24 23 28 28 C 1.46765 * 105.42299 * 319.29449 * 27 26 24 29 29 H 0.96999 * 120.00080 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47105 * 60.00074 * 10 9 7 31 31 H 1.08994 * 109.47038 * 299.99550 * 10 9 7 32 32 H 1.09009 * 113.46550 * 321.93474 * 14 13 11 33 33 H 1.08996 * 113.47100 * 92.36776 * 14 13 11 34 34 H 1.09004 * 114.32420 * 220.46350 * 15 14 13 35 35 H 1.08994 * 114.20115 * 87.73021 * 15 14 13 36 36 H 1.09004 * 109.47008 * 304.10552 * 18 16 13 37 37 H 1.09001 * 109.47305 * 64.10055 * 18 16 13 38 38 H 0.97000 * 120.00242 * 4.97982 * 19 18 16 39 39 H 1.09007 * 117.42942 * 355.37781 * 23 22 20 40 40 H 1.08997 * 117.43216 * 140.06672 * 23 22 20 41 41 H 1.09001 * 110.37456 * 205.65800 * 26 24 23 42 42 H 1.08999 * 110.37310 * 327.99461 * 26 24 23 43 43 H 1.09007 * 110.28749 * 282.46434 * 28 27 26 44 44 H 1.08998 * 111.53824 * 159.38836 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 4.3016 -6.5146 -0.0953 15 6 4.0471 -7.9006 -0.6972 16 6 2.7326 -7.8068 0.0898 17 1 2.8075 -8.1867 1.1086 18 6 1.5286 -8.3731 -0.6656 19 7 1.4456 -9.8181 -0.4391 20 6 0.5186 -10.5499 -1.0885 21 8 -0.2471 -10.0120 -1.8600 22 6 0.4337 -12.0364 -0.8560 23 6 0.8553 -13.0048 -1.9630 24 6 -0.6179 -12.9246 -1.5579 25 1 -1.3507 -12.5202 -2.2562 26 6 -1.1171 -13.8686 -0.4417 27 8 -0.8499 -13.1598 0.7879 28 6 0.4682 -12.5414 0.6035 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1244 -3.7314 -0.8894 32 1 4.7754 -5.8214 -0.7906 33 1 4.7998 -6.5468 0.8736 34 1 4.7262 -8.6759 -0.3423 35 1 3.9208 -7.9013 -1.7798 36 1 0.6169 -7.8960 -0.3059 37 1 1.6441 -8.1784 -1.7318 38 1 2.0578 -10.2482 0.1782 39 1 1.1356 -12.5761 -2.9253 40 1 1.4090 -13.8956 -1.6669 41 1 -2.1862 -14.0517 -0.5495 42 1 -0.5661 -14.8087 -0.4652 43 1 1.2555 -13.2849 0.7291 44 1 0.6190 -11.7083 1.2899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722020378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -36.317264 kcal Electronic energy + Delta-G solvation = -26395.981006 eV Core-core repulsion = 22442.530594 eV Total energy + Delta-G solvation = -3953.450411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20175 -40.52121 -38.87711 -37.55416 -35.11741 -34.77145 -32.43609 -30.89569 -29.77198 -28.43305 -28.07795 -25.91980 -25.48359 -24.24846 -22.70689 -22.14973 -21.53591 -20.23282 -18.89205 -18.00175 -17.67560 -16.75291 -16.47119 -16.24442 -15.92467 -15.57377 -15.44154 -15.05614 -14.87815 -14.80722 -14.47587 -14.15632 -13.94131 -13.75007 -13.58150 -13.10237 -12.98124 -12.70719 -12.52889 -12.43470 -12.15005 -11.95690 -11.74664 -11.68625 -11.23038 -11.06727 -11.04350 -10.91023 -10.77614 -10.73608 -10.26227 -9.96146 -9.84184 -9.49774 -9.20132 -9.06643 -8.70129 -8.25142 -6.51433 -6.21808 -3.93106 2.17582 2.44260 2.88801 2.97389 3.05418 3.23041 3.24257 3.28622 3.44181 3.55192 3.86015 3.96003 4.02575 4.19532 4.29440 4.44633 4.49934 4.53463 4.63004 4.74882 4.80248 4.90591 5.05695 5.06991 5.10842 5.13099 5.15278 5.22663 5.28195 5.32909 5.41925 5.50020 5.60538 5.62307 5.77751 5.81558 5.92980 5.99255 6.10659 6.11669 6.21700 7.17503 7.58484 7.78067 7.95093 8.34333 8.49279 9.22947 10.85534 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.001952 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.724420 B =14344.154388 C =14994.928212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.508 6.508 13 N -0.647 5.647 14 C 0.102 3.898 15 C -0.152 4.152 16 C 0.124 3.876 17 H 0.095 0.905 18 C 0.112 3.888 19 N -0.721 5.721 20 C 0.559 3.441 21 O -0.527 6.527 22 C -0.212 4.212 23 C -0.108 4.108 24 C -0.155 4.155 25 H 0.133 0.867 26 C 0.073 3.927 27 O -0.371 6.371 28 C 0.086 3.914 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.399 0.601 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.518 -29.914 -0.613 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.295 4.295 11 C 0.351 3.649 12 O -0.381 6.381 13 N -0.387 5.387 14 C -0.022 4.022 15 C -0.190 4.190 16 C 0.019 3.981 17 H 0.113 0.887 18 C -0.012 4.012 19 N -0.373 5.373 20 C 0.344 3.656 21 O -0.402 6.402 22 C -0.215 4.215 23 C -0.145 4.145 24 C -0.174 4.174 25 H 0.151 0.849 26 C -0.004 4.004 27 O -0.290 6.290 28 C 0.009 3.991 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.676 -29.423 -0.966 30.424 hybrid contribution 2.464 1.295 0.194 2.790 sum 10.140 -28.128 -0.772 29.910 Atomic orbital electron populations 1.70006 1.05954 1.27614 1.46623 1.25000 0.95040 0.99037 0.94514 0.86214 0.79228 0.81208 0.78783 1.19927 1.20782 1.19940 1.22810 0.94845 0.91588 1.59223 0.90974 1.85449 1.04733 0.96307 1.96727 1.23476 1.06570 0.94565 1.04847 1.20024 0.85370 0.84903 0.74629 1.90734 1.14717 1.84771 1.47837 1.49741 1.08158 1.05003 1.75801 1.22830 0.82359 0.96079 1.00902 1.23539 0.96570 0.97630 1.01216 1.22756 0.94355 0.81856 0.99140 0.88704 1.21653 0.99637 0.78876 1.00994 1.45733 1.36182 1.08697 1.46670 1.19001 0.80120 0.86274 0.80173 1.90770 1.41091 1.72289 1.36093 1.23275 1.10859 0.91965 0.95418 1.23188 0.95681 0.98446 0.97221 1.24396 0.92893 0.98711 1.01383 0.84878 1.22957 1.02157 0.93473 0.81785 1.89580 1.35125 1.68613 1.35697 1.23240 0.86174 0.97705 0.91963 0.92083 0.89277 0.89320 0.89988 0.89707 0.89210 0.88486 0.89300 0.90464 0.76717 0.87137 0.87497 0.87990 0.91505 0.90610 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.14 -2.98 5.99 36.01 0.22 -2.77 16 11 C 0.56 10.85 8.02 -10.98 -0.09 10.76 16 12 O -0.51 -11.90 15.24 5.55 0.08 -11.81 16 13 N -0.65 -8.86 3.57 -177.65 -0.63 -9.49 16 14 C 0.10 0.89 8.40 -8.65 -0.07 0.81 16 15 C -0.15 -1.02 8.00 -26.36 -0.21 -1.23 16 16 C 0.12 1.23 4.09 -72.41 -0.30 0.93 16 17 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 18 C 0.11 1.39 5.39 -4.05 -0.02 1.37 16 19 N -0.72 -6.73 5.40 -60.30 -0.33 -7.05 16 20 C 0.56 6.57 7.44 -10.99 -0.08 6.48 16 21 O -0.53 -8.85 16.84 5.56 0.09 -8.75 16 22 C -0.21 -1.73 2.80 -154.09 -0.43 -2.16 16 23 C -0.11 -0.62 9.87 -26.73 -0.26 -0.88 16 24 C -0.16 -1.20 6.90 -89.05 -0.61 -1.81 16 25 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 26 C 0.07 0.49 7.45 37.93 0.28 0.77 16 27 O -0.37 -3.55 11.72 -35.23 -0.41 -3.96 16 28 C 0.09 0.59 7.21 37.93 0.27 0.86 16 29 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 32 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.72 7.95 -51.93 -0.41 0.30 16 36 H 0.09 1.50 7.05 -51.93 -0.37 1.13 16 37 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 38 H 0.40 2.20 8.09 -40.82 -0.33 1.87 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.10 0.64 7.69 -51.93 -0.40 0.24 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -39.31 386.48 -9.52 -48.83 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.54 Total: -0.61 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.11 Total: 0.05 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.23 Total: -42.22 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.23 Total: -24.53 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.31 -9.52 -48.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722020378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.510 kcal (2) G-P(sol) polarization free energy of solvation -39.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds