Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47242 * 239.99819 * 3 2 1 5 5 H 1.48500 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47073 * 119.99921 * 3 2 1 7 7 C 1.38802 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99881 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99882 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00044 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99892 * 179.97438 * 11 10 9 14 14 C 1.47061 * 136.06007 * 354.65221 * 13 11 10 15 15 C 1.53234 * 88.08239 * 207.20218 * 14 13 11 16 16 C 1.47070 * 136.05650 * 175.01744 * 13 11 10 17 17 H 1.08998 * 113.46855 * 267.68766 * 16 13 11 18 18 C 1.53000 * 113.46620 * 38.06736 * 16 13 11 19 19 N 1.46493 * 109.47134 * 184.10523 * 18 16 13 20 20 C 1.34783 * 120.00435 * 184.98139 * 19 18 16 21 21 O 1.21280 * 119.99231 * 359.97438 * 20 19 18 22 22 C 1.50693 * 120.00044 * 179.97438 * 20 19 18 23 23 C 1.53004 * 119.81003 * 250.22583 * 22 20 19 24 24 C 1.52998 * 60.65770 * 247.69432 * 23 22 20 25 25 H 1.09000 * 119.80935 * 112.30520 * 24 23 22 26 26 C 1.54469 * 118.06682 * 269.59237 * 24 23 22 27 27 O 1.44423 * 104.80503 * 86.82635 * 26 24 23 28 28 C 1.46765 * 105.42299 * 319.29449 * 27 26 24 29 29 H 0.96999 * 120.00080 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47105 * 60.00074 * 10 9 7 31 31 H 1.08994 * 109.47038 * 299.99550 * 10 9 7 32 32 H 1.09009 * 113.46550 * 321.93474 * 14 13 11 33 33 H 1.08996 * 113.47100 * 92.36776 * 14 13 11 34 34 H 1.09004 * 114.32420 * 220.46350 * 15 14 13 35 35 H 1.08994 * 114.20115 * 87.73021 * 15 14 13 36 36 H 1.09004 * 109.47008 * 304.10552 * 18 16 13 37 37 H 1.09001 * 109.47305 * 64.10055 * 18 16 13 38 38 H 0.97000 * 120.00242 * 4.97982 * 19 18 16 39 39 H 1.09007 * 117.42942 * 355.37781 * 23 22 20 40 40 H 1.08997 * 117.43216 * 140.06672 * 23 22 20 41 41 H 1.09001 * 110.37456 * 205.65800 * 26 24 23 42 42 H 1.08999 * 110.37310 * 327.99461 * 26 24 23 43 43 H 1.09007 * 110.28749 * 282.46434 * 28 27 26 44 44 H 1.08998 * 111.53824 * 159.38836 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 4.3016 -6.5146 -0.0953 15 6 4.0471 -7.9006 -0.6972 16 6 2.7326 -7.8068 0.0898 17 1 2.8075 -8.1867 1.1086 18 6 1.5286 -8.3731 -0.6656 19 7 1.4456 -9.8181 -0.4391 20 6 0.5186 -10.5499 -1.0885 21 8 -0.2471 -10.0120 -1.8600 22 6 0.4337 -12.0364 -0.8560 23 6 0.8553 -13.0048 -1.9630 24 6 -0.6179 -12.9246 -1.5579 25 1 -1.3507 -12.5202 -2.2562 26 6 -1.1171 -13.8686 -0.4417 27 8 -0.8499 -13.1598 0.7879 28 6 0.4682 -12.5414 0.6035 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1244 -3.7314 -0.8894 32 1 4.7754 -5.8214 -0.7906 33 1 4.7998 -6.5468 0.8736 34 1 4.7262 -8.6759 -0.3423 35 1 3.9208 -7.9013 -1.7798 36 1 0.6169 -7.8960 -0.3059 37 1 1.6441 -8.1784 -1.7318 38 1 2.0578 -10.2482 0.1782 39 1 1.1356 -12.5761 -2.9253 40 1 1.4090 -13.8956 -1.6669 41 1 -2.1862 -14.0517 -0.5495 42 1 -0.5661 -14.8087 -0.4652 43 1 1.2555 -13.2849 0.7291 44 1 0.6190 -11.7083 1.2899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722020378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -67.582902 kcal Electronic energy + Delta-G solvation = -26397.336786 eV Core-core repulsion = 22442.530594 eV Total energy + Delta-G solvation = -3954.806191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96054 -41.47728 -39.79551 -38.91313 -35.98050 -35.53857 -34.61980 -32.25796 -30.53353 -29.49293 -29.06114 -27.67725 -26.42815 -25.03439 -23.51687 -23.16107 -22.10708 -21.10799 -20.19887 -19.45665 -18.67392 -18.02651 -17.49513 -17.03105 -16.91720 -16.79210 -16.64014 -16.34086 -16.07405 -15.87864 -15.70007 -15.36386 -15.02779 -14.76485 -14.53324 -14.18859 -13.95894 -13.85466 -13.66328 -13.43604 -13.19331 -13.08181 -12.95565 -12.88082 -12.66454 -12.43832 -12.25828 -11.85259 -11.78967 -11.73738 -11.34386 -11.15687 -11.01933 -10.87595 -10.63518 -10.33010 -10.26986 -9.81402 -8.72747 -8.37250 -6.17252 1.15015 1.31985 1.38826 1.42389 1.51284 1.52767 1.74316 2.16935 2.24936 2.34193 2.92462 2.96593 3.16773 3.32410 3.34752 3.37644 3.61925 3.64649 3.71027 3.91726 3.97087 3.98814 4.01879 4.21336 4.34605 4.41050 4.45254 4.56050 4.60749 4.62996 4.64202 4.67931 4.72356 4.76479 4.87719 4.96627 4.97321 5.07860 5.19518 5.32876 5.37780 5.60997 6.16348 6.38817 6.58527 7.03056 7.06289 7.11474 8.71908 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.001952 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.724420 B =14344.154388 C =14994.928212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.157 6.157 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.567 6.567 13 N -0.651 5.651 14 C 0.095 3.905 15 C -0.124 4.124 16 C 0.121 3.879 17 H 0.128 0.872 18 C 0.121 3.879 19 N -0.698 5.698 20 C 0.551 3.449 21 O -0.591 6.591 22 C -0.222 4.222 23 C -0.075 4.075 24 C -0.173 4.173 25 H 0.108 0.892 26 C 0.075 3.925 27 O -0.405 6.405 28 C 0.088 3.912 29 H 0.271 0.729 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.422 0.578 39 H 0.105 0.895 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.310 -32.262 0.241 35.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.070 5.930 10 C -0.267 4.267 11 C 0.345 3.655 12 O -0.445 6.445 13 N -0.389 5.389 14 C -0.026 4.026 15 C -0.161 4.161 16 C 0.018 3.982 17 H 0.146 0.854 18 C -0.004 4.004 19 N -0.351 5.351 20 C 0.338 3.662 21 O -0.471 6.471 22 C -0.226 4.226 23 C -0.112 4.112 24 C -0.192 4.192 25 H 0.126 0.874 26 C -0.001 4.001 27 O -0.325 6.325 28 C 0.012 3.988 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.261 0.739 39 H 0.124 0.876 40 H 0.165 0.835 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.580 -31.845 -0.081 34.240 hybrid contribution 1.011 1.873 -0.097 2.131 sum 13.591 -29.972 -0.178 32.910 Atomic orbital electron populations 1.70190 1.08100 1.28751 1.47834 1.26204 0.96008 1.03522 0.93635 0.84955 0.77759 0.75354 0.79611 1.18534 1.20398 1.18419 1.23150 0.95320 0.91730 1.59163 0.89771 1.85682 1.10735 0.99539 1.97057 1.23252 1.03280 0.93811 1.06347 1.19731 0.85188 0.85660 0.74964 1.90715 1.17247 1.85603 1.50966 1.49811 1.10378 1.05569 1.73102 1.23317 0.78997 0.97177 1.03075 1.23497 0.94386 0.97779 1.00460 1.23207 0.94699 0.79078 1.01243 0.85446 1.21332 0.98754 0.80446 0.99894 1.45488 1.35979 1.07264 1.46358 1.19794 0.79227 0.88075 0.79082 1.90742 1.43514 1.73875 1.39009 1.23271 1.12474 0.89461 0.97358 1.23336 0.93809 0.98249 0.95821 1.24467 0.93769 0.99249 1.01760 0.87388 1.23091 1.02784 0.93983 0.80275 1.89543 1.36743 1.69269 1.36899 1.23441 0.86192 0.98732 0.90434 0.91958 0.87409 0.87754 0.89466 0.86451 0.84052 0.89158 0.94698 0.92654 0.73936 0.87629 0.83550 0.88113 0.88323 0.86639 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.46 13.22 21.65 0.29 -57.17 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.55 -31.87 9.50 67.95 0.65 -31.23 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.16 -9.11 20.57 -56.49 -1.16 -10.28 16 10 C -0.12 -4.85 5.99 71.24 0.43 -4.42 16 11 C 0.56 22.09 8.02 87.66 0.70 22.80 16 12 O -0.57 -28.57 15.24 -3.04 -0.05 -28.62 16 13 N -0.65 -17.01 3.57 -834.34 -2.98 -19.98 16 14 C 0.10 1.27 8.40 83.09 0.70 1.97 16 15 C -0.12 -1.11 8.00 30.84 0.25 -0.86 16 16 C 0.12 2.13 4.09 41.78 0.17 2.31 16 17 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 18 C 0.12 3.11 5.39 86.38 0.47 3.58 16 19 N -0.70 -12.63 5.40 -463.07 -2.50 -15.13 16 20 C 0.55 13.31 7.44 87.65 0.65 13.97 16 21 O -0.59 -21.62 16.84 -3.03 -0.05 -21.68 16 22 C -0.22 -3.35 2.80 -51.91 -0.15 -3.50 16 23 C -0.08 -0.66 9.87 30.59 0.30 -0.36 16 24 C -0.17 -2.59 6.90 -9.78 -0.07 -2.66 16 25 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 26 C 0.07 0.90 7.45 72.48 0.54 1.44 16 27 O -0.40 -7.21 11.72 -148.98 -1.75 -8.95 16 28 C 0.09 0.98 7.21 72.48 0.52 1.51 16 29 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.11 4.05 8.14 -2.40 -0.02 4.04 16 31 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 32 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.09 1.02 7.95 -2.39 -0.02 1.01 16 36 H 0.03 1.30 7.05 -2.38 -0.02 1.28 16 37 H 0.06 1.65 7.89 -2.39 -0.02 1.63 16 38 H 0.42 3.48 8.09 -92.71 -0.75 2.73 16 39 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.15 0.17 8.14 -2.39 -0.02 0.16 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 43 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 44 H 0.10 1.07 7.69 -2.39 -0.02 1.05 16 Total: -1.00 -97.05 386.48 -0.27 -97.32 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.27 Total: 12.67 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 5.63 Total: 5.64 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -5.19 Total: -92.29 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -1.84 Total: -59.25 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.16 Total: -10.28 kcal Total: -97.05 -0.27 -97.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722020378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.736 kcal (2) G-P(sol) polarization free energy of solvation -97.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds