Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37940 * 120.07102 * 2 1 4 4 C 1.38379 * 120.18870 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.31149 * 0.25522 * 4 3 2 6 6 C 1.38114 * 120.13355 * 359.49012 * 5 4 3 7 7 Cl 1.73593 * 120.09448 * 180.25511 * 6 5 4 8 8 C 1.39587 * 120.06889 * 179.97438 * 2 1 3 9 9 C 1.47769 * 120.15365 * 0.02562 * 8 2 1 10 10 O 1.21553 * 120.00198 * 89.99712 * 9 8 2 11 11 N 1.34781 * 119.99831 * 269.99471 * 9 8 2 12 12 C 1.46503 * 119.99826 * 0.02562 * 11 9 8 13 13 C 1.46492 * 119.99863 * 179.97438 * 11 9 8 14 14 C 1.52998 * 109.47188 * 90.00402 * 13 11 9 15 15 H 1.09006 * 109.47096 * 59.99698 * 14 13 11 16 16 O 1.42896 * 109.47052 * 300.00188 * 14 13 11 17 17 C 1.53004 * 109.47319 * 179.97438 * 14 13 11 18 18 N 1.46497 * 109.47041 * 184.99979 * 17 14 13 19 19 C 1.46507 * 119.99922 * 89.99971 * 18 17 14 20 20 C 1.36943 * 120.00217 * 270.00055 * 18 17 14 21 21 H 1.07997 * 120.00147 * 141.91810 * 20 18 17 22 22 C 1.38810 * 119.99504 * 321.91900 * 20 18 17 23 23 N 1.31614 * 119.99549 * 157.18968 * 22 20 18 24 24 Si 1.86792 * 120.00389 * 337.19130 * 22 20 18 25 25 H 1.48500 * 109.47422 * 95.67223 * 24 22 20 26 26 H 1.48504 * 109.47390 * 215.67636 * 24 22 20 27 27 H 1.48507 * 109.47213 * 335.67511 * 24 22 20 28 28 H 1.08997 * 109.47381 * 89.99956 * 1 2 3 29 29 H 1.08998 * 109.46828 * 210.00465 * 1 2 3 30 30 H 1.09003 * 109.47217 * 329.99647 * 1 2 3 31 31 H 1.08007 * 119.90665 * 359.95745 * 3 2 1 32 32 H 1.08001 * 119.83995 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.93321 * 179.71648 * 5 4 3 34 34 H 1.08996 * 109.47556 * 89.99794 * 12 11 9 35 35 H 1.09003 * 109.46830 * 209.99701 * 12 11 9 36 36 H 1.09001 * 109.46623 * 329.99000 * 12 11 9 37 37 H 1.09003 * 109.47330 * 210.00173 * 13 11 9 38 38 H 1.08998 * 109.47598 * 330.00048 * 13 11 9 39 39 H 0.96699 * 113.99982 * 299.99179 * 16 14 13 40 40 H 1.09000 * 109.46884 * 304.99487 * 17 14 13 41 41 H 1.08997 * 109.46746 * 65.00139 * 17 14 13 42 42 H 1.09000 * 109.47107 * 85.69115 * 19 18 17 43 43 H 1.09008 * 109.47152 * 205.68371 * 19 18 17 44 44 H 1.08991 * 109.47188 * 325.68561 * 19 18 17 45 45 H 0.97001 * 119.99860 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1937 0.0000 4 6 3.5819 1.1966 0.0005 5 6 4.2824 0.0040 -0.0042 6 6 3.6037 -1.1988 0.0010 7 17 4.4839 -2.6950 0.0017 8 6 2.2063 -1.2080 0.0005 9 6 1.4725 -2.4906 0.0005 10 8 1.1710 -3.0184 -1.0521 11 7 1.1374 -3.0753 1.1678 12 6 1.5004 -2.4389 2.4365 13 6 0.4094 -4.3465 1.1678 14 6 1.4077 -5.5059 1.1681 15 1 2.0341 -5.4459 2.0582 16 8 2.2292 -5.4275 0.0015 17 6 0.6473 -6.8337 1.1688 18 7 1.5987 -7.9411 1.2894 19 6 1.9787 -8.4394 2.6137 20 6 2.1329 -8.5106 0.1644 21 1 3.1663 -8.8243 0.1565 22 6 1.3461 -8.6847 -0.9658 23 7 1.9104 -8.7960 -2.1496 24 14 -0.5135 -8.7609 -0.8067 25 1 -1.0880 -7.4161 -1.0650 26 1 -1.0556 -9.7288 -1.7939 27 1 -0.8754 -9.1984 0.5656 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6577 2.1289 -0.0007 32 1 4.1174 2.1345 0.0001 33 1 5.3624 0.0134 -0.0084 34 1 0.6983 -1.7710 2.7506 35 1 1.6537 -3.2051 3.1965 36 1 2.4193 -1.8673 2.3064 37 1 -0.2172 -4.4064 2.0577 38 1 -0.2169 -4.4066 0.2778 39 1 1.7374 -5.4747 -0.8297 40 1 -0.0445 -6.8557 2.0108 41 1 0.0898 -6.9334 0.2375 42 1 1.2512 -9.1801 2.9457 43 1 2.9658 -8.8987 2.5597 44 1 2.0019 -7.6104 3.3209 45 1 1.3606 -8.9180 -2.9394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725719496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -29.574323 kcal Electronic energy + Delta-G solvation = -28721.898636 eV Core-core repulsion = 24766.696914 eV Total energy + Delta-G solvation = -3955.201722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54776 -38.75244 -37.10126 -36.46584 -35.30801 -34.30191 -33.05072 -31.54435 -31.32941 -29.72858 -27.48814 -27.10826 -26.26354 -25.49382 -23.46330 -22.07695 -21.50792 -20.67221 -19.49450 -17.58817 -17.00502 -16.42239 -16.37993 -16.03344 -15.59711 -15.23799 -14.88544 -14.44130 -14.24739 -14.05671 -13.79339 -13.74605 -13.38743 -13.31104 -12.99826 -12.78980 -12.75884 -12.64517 -12.38386 -12.24292 -11.92239 -11.90536 -11.65090 -11.41357 -11.36101 -11.20574 -10.83052 -10.78181 -10.45673 -10.37284 -9.93932 -9.77706 -9.51626 -9.37845 -9.06388 -8.86852 -8.44251 -8.31133 -6.68527 -5.86973 -3.26338 0.77032 0.90822 2.10552 2.68657 3.02904 3.30168 3.33794 3.50977 3.55308 4.33715 4.42529 4.54986 4.59925 4.88763 4.94995 4.98350 5.04636 5.08704 5.19159 5.31426 5.34245 5.37550 5.41917 5.47919 5.54034 5.59221 5.71460 5.78793 5.83355 5.88558 5.97947 6.01226 6.10167 6.12888 6.28559 6.38391 6.44208 6.58165 6.67381 6.72883 6.84338 7.42823 8.15103 8.27657 8.49626 8.75190 9.07887 9.81798 10.21069 11.28929 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003708 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.743762 B = 7550.013898 C = 7827.808737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 C -0.122 4.122 4 C -0.094 4.094 5 C -0.121 4.121 6 C -0.009 4.009 7 Cl -0.030 7.030 8 C -0.108 4.108 9 C 0.571 3.429 10 O -0.513 6.513 11 N -0.599 5.599 12 C 0.081 3.919 13 C 0.077 3.923 14 C 0.080 3.920 15 H 0.083 0.917 16 O -0.526 6.526 17 C 0.109 3.891 18 N -0.603 5.603 19 C 0.127 3.873 20 C -0.252 4.252 21 H 0.075 0.925 22 C 0.036 3.964 23 N -0.896 5.896 24 Si 0.870 3.130 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.273 1.273 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.373 0.627 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.005 0.995 43 H 0.045 0.955 44 H 0.024 0.976 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 23.314 10.068 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.046 4.046 3 C -0.140 4.140 4 C -0.112 4.112 5 C -0.140 4.140 6 C -0.037 4.037 7 Cl -0.001 7.001 8 C -0.112 4.112 9 C 0.357 3.643 10 O -0.387 6.387 11 N -0.331 5.331 12 C -0.062 4.062 13 C -0.046 4.046 14 C 0.016 3.984 15 H 0.101 0.899 16 O -0.330 6.330 17 C -0.018 4.018 18 N -0.326 5.326 19 C -0.018 4.018 20 C -0.380 4.380 21 H 0.093 0.907 22 C -0.164 4.164 23 N -0.538 5.538 24 Si 0.701 3.299 25 H -0.215 1.215 26 H -0.230 1.230 27 H -0.198 1.198 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.220 0.780 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.630 22.838 9.793 24.858 hybrid contribution -1.372 -0.170 -0.312 1.417 sum -2.002 22.669 9.481 24.653 Atomic orbital electron populations 1.20880 0.90218 1.03176 1.03374 1.19869 0.96370 0.91164 0.97161 1.21030 0.94262 0.97412 1.01318 1.21208 0.94124 0.97730 0.98121 1.21042 1.00705 0.90469 1.01749 1.21104 0.91210 0.89404 1.01984 1.98487 1.75104 1.30185 1.96275 1.19764 0.92158 0.94367 1.04946 1.17906 0.78847 0.83540 0.83996 1.90817 1.53260 1.63911 1.30756 1.47613 1.57164 1.22752 1.05609 1.21735 1.00340 0.98268 0.85850 1.22490 0.95478 0.83385 1.03255 1.22872 0.92507 0.92498 0.90494 0.89893 1.86536 1.35954 1.95748 1.14808 1.21828 0.92214 0.88014 0.99734 1.43869 1.52200 1.33952 1.02575 1.21055 0.98348 0.95842 0.86600 1.18680 0.94689 1.35623 0.89044 0.90743 1.25391 0.97017 0.98553 0.95406 1.69896 1.35160 1.51227 0.97489 0.87041 0.88778 0.76701 0.77405 1.21523 1.22999 1.19764 0.90185 0.91261 0.90715 0.85014 0.84851 0.84493 0.92813 0.90736 0.91465 0.90206 0.89753 0.78029 0.93976 0.92498 0.97646 0.93658 0.95778 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.62 36.00 0.35 -0.76 16 2 C -0.04 -0.48 5.91 -104.23 -0.62 -1.10 16 3 C -0.12 -1.02 9.69 -39.64 -0.38 -1.41 16 4 C -0.09 -0.75 10.04 -39.50 -0.40 -1.15 16 5 C -0.12 -1.22 9.82 -39.60 -0.39 -1.61 16 6 C -0.01 -0.13 5.92 -39.07 -0.23 -0.36 16 7 Cl -0.03 -0.47 28.04 -51.86 -1.45 -1.93 16 8 C -0.11 -1.48 3.92 -104.94 -0.41 -1.89 16 9 C 0.57 9.28 4.14 -12.36 -0.05 9.23 16 10 O -0.51 -10.46 15.47 -3.44 -0.05 -10.51 16 11 N -0.60 -8.52 2.83 -182.73 -0.52 -9.04 16 12 C 0.08 0.85 10.26 59.85 0.61 1.47 16 13 C 0.08 1.19 5.15 -4.05 -0.02 1.17 16 14 C 0.08 1.52 3.48 -26.73 -0.09 1.43 16 15 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 16 O -0.53 -12.02 11.62 -43.99 -0.51 -12.53 16 17 C 0.11 2.32 4.21 -4.04 -0.02 2.31 16 18 N -0.60 -14.62 2.45 -181.11 -0.44 -15.07 16 19 C 0.13 2.59 10.70 59.85 0.64 3.23 16 20 C -0.25 -7.22 9.39 -15.06 -0.14 -7.37 16 21 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 22 C 0.04 1.07 5.29 -17.43 -0.09 0.97 16 23 N -0.90 -28.02 13.97 55.49 0.78 -27.24 16 24 Si 0.87 22.54 25.09 -169.99 -4.27 18.27 16 25 H -0.29 -7.18 6.68 56.52 0.38 -6.80 16 26 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 27 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.71 7.08 -51.93 -0.37 0.34 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.07 0.71 6.55 -51.93 -0.34 0.37 16 37 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 38 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 39 H 0.37 9.10 8.45 45.56 0.38 9.49 16 40 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.06 1.35 3.38 -51.93 -0.18 1.17 16 42 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.04 0.92 8.01 -51.92 -0.42 0.51 16 44 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -35.14 382.29 -7.89 -43.03 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.94 Total: 5.11 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.24 Total: 4.15 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.18 Total: -51.34 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.56 Total: -23.05 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.27 Total: 18.27 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.45 Total: -1.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.14 -7.89 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725719496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.454 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds