Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37940 * 120.07102 * 2 1 4 4 C 1.38379 * 120.18870 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.31149 * 0.25522 * 4 3 2 6 6 C 1.38114 * 120.13355 * 359.49012 * 5 4 3 7 7 Cl 1.73593 * 120.09448 * 180.25511 * 6 5 4 8 8 C 1.39587 * 120.06889 * 179.97438 * 2 1 3 9 9 C 1.47769 * 120.15365 * 0.02562 * 8 2 1 10 10 O 1.21553 * 120.00198 * 89.99712 * 9 8 2 11 11 N 1.34781 * 119.99831 * 269.99471 * 9 8 2 12 12 C 1.46503 * 119.99826 * 0.02562 * 11 9 8 13 13 C 1.46492 * 119.99863 * 179.97438 * 11 9 8 14 14 C 1.52998 * 109.47188 * 90.00402 * 13 11 9 15 15 H 1.09006 * 109.47096 * 59.99698 * 14 13 11 16 16 O 1.42896 * 109.47052 * 300.00188 * 14 13 11 17 17 C 1.53004 * 109.47319 * 179.97438 * 14 13 11 18 18 N 1.46497 * 109.47041 * 184.99979 * 17 14 13 19 19 C 1.46507 * 119.99922 * 89.99971 * 18 17 14 20 20 C 1.36943 * 120.00217 * 270.00055 * 18 17 14 21 21 H 1.07997 * 120.00147 * 141.91810 * 20 18 17 22 22 C 1.38810 * 119.99504 * 321.91900 * 20 18 17 23 23 N 1.31614 * 119.99549 * 157.18968 * 22 20 18 24 24 Si 1.86792 * 120.00389 * 337.19130 * 22 20 18 25 25 H 1.48500 * 109.47422 * 95.67223 * 24 22 20 26 26 H 1.48504 * 109.47390 * 215.67636 * 24 22 20 27 27 H 1.48507 * 109.47213 * 335.67511 * 24 22 20 28 28 H 1.08997 * 109.47381 * 89.99956 * 1 2 3 29 29 H 1.08998 * 109.46828 * 210.00465 * 1 2 3 30 30 H 1.09003 * 109.47217 * 329.99647 * 1 2 3 31 31 H 1.08007 * 119.90665 * 359.95745 * 3 2 1 32 32 H 1.08001 * 119.83995 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.93321 * 179.71648 * 5 4 3 34 34 H 1.08996 * 109.47556 * 89.99794 * 12 11 9 35 35 H 1.09003 * 109.46830 * 209.99701 * 12 11 9 36 36 H 1.09001 * 109.46623 * 329.99000 * 12 11 9 37 37 H 1.09003 * 109.47330 * 210.00173 * 13 11 9 38 38 H 1.08998 * 109.47598 * 330.00048 * 13 11 9 39 39 H 0.96699 * 113.99982 * 299.99179 * 16 14 13 40 40 H 1.09000 * 109.46884 * 304.99487 * 17 14 13 41 41 H 1.08997 * 109.46746 * 65.00139 * 17 14 13 42 42 H 1.09000 * 109.47107 * 85.69115 * 19 18 17 43 43 H 1.09008 * 109.47152 * 205.68371 * 19 18 17 44 44 H 1.08991 * 109.47188 * 325.68561 * 19 18 17 45 45 H 0.97001 * 119.99860 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1937 0.0000 4 6 3.5819 1.1966 0.0005 5 6 4.2824 0.0040 -0.0042 6 6 3.6037 -1.1988 0.0010 7 17 4.4839 -2.6950 0.0017 8 6 2.2063 -1.2080 0.0005 9 6 1.4725 -2.4906 0.0005 10 8 1.1710 -3.0184 -1.0521 11 7 1.1374 -3.0753 1.1678 12 6 1.5004 -2.4389 2.4365 13 6 0.4094 -4.3465 1.1678 14 6 1.4077 -5.5059 1.1681 15 1 2.0341 -5.4459 2.0582 16 8 2.2292 -5.4275 0.0015 17 6 0.6473 -6.8337 1.1688 18 7 1.5987 -7.9411 1.2894 19 6 1.9787 -8.4394 2.6137 20 6 2.1329 -8.5106 0.1644 21 1 3.1663 -8.8243 0.1565 22 6 1.3461 -8.6847 -0.9658 23 7 1.9104 -8.7960 -2.1496 24 14 -0.5135 -8.7609 -0.8067 25 1 -1.0880 -7.4161 -1.0650 26 1 -1.0556 -9.7288 -1.7939 27 1 -0.8754 -9.1984 0.5656 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6577 2.1289 -0.0007 32 1 4.1174 2.1345 0.0001 33 1 5.3624 0.0134 -0.0084 34 1 0.6983 -1.7710 2.7506 35 1 1.6537 -3.2051 3.1965 36 1 2.4193 -1.8673 2.3064 37 1 -0.2172 -4.4064 2.0577 38 1 -0.2169 -4.4066 0.2778 39 1 1.7374 -5.4747 -0.8297 40 1 -0.0445 -6.8557 2.0108 41 1 0.0898 -6.9334 0.2375 42 1 1.2512 -9.1801 2.9457 43 1 2.9658 -8.8987 2.5597 44 1 2.0019 -7.6104 3.3209 45 1 1.3606 -8.9180 -2.9394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725719496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -54.276502 kcal Electronic energy + Delta-G solvation = -28722.969803 eV Core-core repulsion = 24766.696914 eV Total energy + Delta-G solvation = -3956.272889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57630 -39.80587 -38.68797 -37.50547 -36.78035 -35.93302 -33.82923 -33.69695 -32.32050 -31.13669 -28.45169 -28.18656 -27.89326 -26.93371 -24.57377 -23.27446 -22.70677 -22.38882 -20.56895 -19.02111 -18.51645 -17.60856 -17.48777 -17.40236 -17.04219 -16.61020 -16.02286 -15.93277 -15.63054 -15.52984 -14.95168 -14.85574 -14.67835 -14.49418 -14.30640 -14.08144 -13.99289 -13.73593 -13.67895 -13.46713 -13.30834 -13.13560 -12.70183 -12.66459 -12.61714 -12.42500 -12.33357 -12.27223 -12.02386 -11.94736 -11.90221 -11.53166 -11.08574 -10.93818 -10.60858 -9.89608 -9.70551 -9.60343 -8.66471 -8.14526 -5.50783 -0.04589 0.13983 1.12731 1.27527 1.38394 1.49638 1.51645 1.99832 2.42978 2.51436 3.05062 3.38178 3.45841 3.65941 3.75346 3.91191 3.98981 4.17697 4.19770 4.23449 4.24616 4.34685 4.43131 4.51098 4.57222 4.61449 4.65880 4.69872 4.71744 4.74468 4.77771 4.83082 5.03708 5.10286 5.11893 5.12479 5.22979 5.28863 5.38453 5.46902 5.76973 5.97164 6.19851 6.31474 6.90128 7.04679 7.12520 7.66891 8.07083 9.05837 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003708 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.743762 B = 7550.013898 C = 7827.808737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 C -0.110 4.110 4 C -0.079 4.079 5 C -0.124 4.124 6 C -0.031 4.031 7 Cl -0.070 7.070 8 C -0.134 4.134 9 C 0.569 3.431 10 O -0.570 6.570 11 N -0.596 5.596 12 C 0.077 3.923 13 C 0.086 3.914 14 C 0.082 3.918 15 H 0.091 0.909 16 O -0.547 6.547 17 C 0.105 3.895 18 N -0.618 5.618 19 C 0.124 3.876 20 C -0.241 4.241 21 H 0.026 0.974 22 C -0.017 4.017 23 N -0.948 5.948 24 Si 0.942 3.058 25 H -0.276 1.276 26 H -0.312 1.312 27 H -0.256 1.256 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.359 0.641 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.019 0.981 43 H 0.033 0.967 44 H 0.060 0.940 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 26.994 13.005 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.128 4.128 4 C -0.097 4.097 5 C -0.142 4.142 6 C -0.058 4.058 7 Cl -0.041 7.041 8 C -0.138 4.138 9 C 0.357 3.643 10 O -0.449 6.449 11 N -0.327 5.327 12 C -0.065 4.065 13 C -0.038 4.038 14 C 0.020 3.980 15 H 0.108 0.892 16 O -0.350 6.350 17 C -0.021 4.021 18 N -0.342 5.342 19 C -0.020 4.020 20 C -0.371 4.371 21 H 0.044 0.956 22 C -0.213 4.213 23 N -0.593 5.593 24 Si 0.771 3.229 25 H -0.203 1.203 26 H -0.241 1.241 27 H -0.180 1.180 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.169 0.831 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.082 0.918 39 H 0.204 0.796 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.475 26.553 12.835 29.596 hybrid contribution -0.694 -1.174 -1.127 1.769 sum -3.169 25.379 11.708 28.129 Atomic orbital electron populations 1.20912 0.89302 1.04123 1.03116 1.20146 0.97171 0.90940 0.96962 1.21492 0.94578 0.97805 0.98877 1.21689 0.94256 0.98247 0.95529 1.21330 1.01664 0.90072 1.01143 1.21267 0.91110 0.88832 1.04575 1.98465 1.75900 1.33072 1.96688 1.19715 0.92256 0.94144 1.07666 1.18391 0.78058 0.84213 0.83597 1.90778 1.55636 1.65671 1.32806 1.47691 1.56351 1.22085 1.06594 1.21980 1.01333 0.98982 0.84175 1.22286 0.94497 0.82663 1.04328 1.22911 0.92852 0.93147 0.89133 0.89155 1.86528 1.37232 1.95994 1.15229 1.21943 0.92166 0.87873 1.00116 1.44011 1.52531 1.35103 1.02559 1.21171 0.97970 0.97486 0.85341 1.18465 0.92837 1.34997 0.90826 0.95594 1.25964 1.01707 0.98907 0.94758 1.70046 1.36929 1.53930 0.98380 0.85886 0.82646 0.76779 0.77618 1.20293 1.24066 1.18035 0.91051 0.92736 0.87274 0.81207 0.80842 0.83087 0.89886 0.89406 0.91770 0.85839 0.91838 0.79560 0.89877 0.94908 0.96289 0.94832 0.92099 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 9.62 71.23 0.69 -1.21 16 2 C -0.05 -0.98 5.91 -19.61 -0.12 -1.10 16 3 C -0.11 -1.36 9.69 22.23 0.22 -1.14 16 4 C -0.08 -0.94 10.04 22.32 0.22 -0.72 16 5 C -0.12 -2.25 9.82 22.26 0.22 -2.04 16 6 C -0.03 -0.81 5.92 22.60 0.13 -0.67 16 7 Cl -0.07 -2.33 28.04 -2.72 -0.08 -2.40 16 8 C -0.13 -3.60 3.92 -20.07 -0.08 -3.68 16 9 C 0.57 18.79 4.14 86.76 0.36 19.15 16 10 O -0.57 -24.55 15.47 4.49 0.07 -24.48 16 11 N -0.60 -16.40 2.83 -850.30 -2.40 -18.80 16 12 C 0.08 1.43 10.26 127.77 1.31 2.74 16 13 C 0.09 2.52 5.15 86.38 0.44 2.97 16 14 C 0.08 3.06 3.48 30.59 0.11 3.17 16 15 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 16 O -0.55 -26.11 11.62 -140.60 -1.63 -27.74 16 17 C 0.11 4.29 4.21 86.38 0.36 4.65 16 18 N -0.62 -29.64 2.45 -726.92 -1.78 -31.42 16 19 C 0.12 4.85 10.70 127.77 1.37 6.22 16 20 C -0.24 -14.33 9.39 84.03 0.79 -13.54 16 21 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 22 C -0.02 -1.06 5.29 84.86 0.45 -0.61 16 23 N -0.95 -62.30 13.97 21.65 0.30 -62.00 16 24 Si 0.94 47.68 25.09 68.60 1.72 49.41 16 25 H -0.28 -13.32 6.68 99.48 0.66 -12.66 16 26 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 27 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.03 7.08 -2.39 -0.02 1.02 16 30 H 0.11 0.94 8.09 -2.39 -0.02 0.93 16 31 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 36 H 0.06 1.26 6.55 -2.39 -0.02 1.25 16 37 H 0.12 2.52 8.07 -2.39 -0.02 2.50 16 38 H 0.06 2.17 7.42 -2.39 -0.02 2.15 16 39 H 0.36 18.87 8.45 -74.06 -0.63 18.24 16 40 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 41 H 0.03 1.52 3.38 -2.39 -0.01 1.51 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.03 1.35 8.01 -2.38 -0.02 1.33 16 44 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 45 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -83.82 382.29 3.01 -80.81 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.34 Total: 22.44 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.47 Total: 14.19 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -3.88 Total: -112.22 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.56 Total: -52.22 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.72 Total: 49.41 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.40 kcal Total: -83.82 3.01 -80.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725719496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.530 kcal (2) G-P(sol) polarization free energy of solvation -83.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds