Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86807 * 119.99829 * 2 1 4 4 H 1.48505 * 109.46886 * 239.99734 * 3 2 1 5 5 H 1.48499 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47126 * 119.99921 * 3 2 1 7 7 C 1.38947 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00290 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99668 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00438 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99763 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47105 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00071 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47040 * 324.99983 * 14 13 12 16 16 C 1.53002 * 109.47053 * 84.99749 * 14 13 12 17 17 O 1.42905 * 109.46911 * 65.00374 * 16 14 13 18 18 C 1.52993 * 109.47378 * 205.00194 * 14 13 12 19 19 N 1.46499 * 109.47066 * 54.99529 * 18 14 13 20 20 C 1.34777 * 119.99908 * 180.02562 * 19 18 14 21 21 O 1.21555 * 120.00078 * 0.02562 * 20 19 18 22 22 C 1.47845 * 120.00355 * 180.02562 * 20 19 18 23 23 C 1.39561 * 120.54301 * 359.72224 * 22 20 19 24 24 N 1.31654 * 120.62235 * 179.68172 * 23 22 20 25 25 C 1.31935 * 121.90669 * 0.63291 * 24 23 22 26 26 C 1.38543 * 121.04433 * 359.65210 * 25 24 23 27 27 F 1.35098 * 120.37210 * 180.02562 * 26 25 24 28 28 C 1.38609 * 119.25194 * 0.02572 * 26 25 24 29 29 H 0.97000 * 120.00191 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00136 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47315 * 60.00555 * 12 10 9 32 32 H 1.08996 * 109.47653 * 300.00085 * 12 10 9 33 33 H 1.00897 * 111.00222 * 56.05059 * 13 12 10 34 34 H 1.09003 * 109.47073 * 184.99730 * 16 14 13 35 35 H 1.09002 * 109.47495 * 305.00162 * 16 14 13 36 36 H 0.96700 * 113.99414 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47744 * 174.99896 * 18 14 13 38 38 H 1.09009 * 109.46953 * 294.99788 * 18 14 13 39 39 H 0.97001 * 120.00576 * 0.02562 * 19 18 14 40 40 H 1.08001 * 119.68920 * 0.02562 * 23 22 20 41 41 H 1.08009 * 119.48246 * 179.67959 * 25 24 23 42 42 H 1.07992 * 120.86770 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2438 -4.8628 0.0011 13 7 2.1985 -5.9794 0.0016 14 6 1.4982 -7.2708 0.0016 15 1 0.5848 -7.1888 0.5907 16 6 1.1450 -7.6594 -1.4355 17 8 2.3459 -7.8805 -2.1779 18 6 2.4040 -8.3422 0.6117 19 7 2.8389 -7.9135 1.9433 20 6 3.6499 -8.7038 2.6743 21 8 4.0208 -9.7721 2.2284 22 6 4.0884 -8.2716 4.0184 23 6 3.6742 -7.0448 4.5391 24 7 4.0586 -6.6611 5.7384 25 6 4.8522 -7.4032 6.4869 26 6 5.3122 -8.6315 6.0408 27 9 6.1239 -9.3805 6.8188 28 6 4.9304 -9.0831 4.7872 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6169 -4.9209 -0.8886 32 1 0.6175 -4.9205 0.8913 33 1 2.8333 -5.9121 0.7830 34 1 0.5487 -8.5718 -1.4291 35 1 0.5738 -6.8553 -1.8995 36 1 2.1976 -8.1314 -3.1000 37 1 1.8540 -9.2797 0.6934 38 1 3.2760 -8.4871 -0.0262 39 1 2.5433 -7.0609 2.2991 40 1 3.0276 -6.4067 3.9550 41 1 5.1474 -7.0477 7.4632 42 1 5.2733 -10.0366 4.4137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734363816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -116.453728 kcal Electronic energy + Delta-G solvation = -28649.430632 eV Core-core repulsion = 24158.584818 eV Total energy + Delta-G solvation = -4490.845814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.41776 -40.98800 -39.50279 -38.53125 -37.57187 -35.68799 -34.27254 -33.74411 -33.01208 -31.66824 -31.25452 -30.07152 -26.55033 -26.36133 -24.57642 -24.09833 -23.89029 -21.16298 -20.68911 -19.43783 -18.78162 -17.96629 -17.85347 -17.50272 -17.37948 -16.89241 -16.31045 -16.22211 -15.76814 -15.61407 -15.44523 -14.72909 -14.58001 -14.34547 -14.31192 -13.96869 -13.90046 -13.73320 -13.63725 -13.53393 -13.30552 -12.83868 -12.55726 -12.30394 -11.87268 -11.65262 -11.50876 -11.14413 -11.03915 -10.75138 -10.46462 -10.40666 -10.24700 -9.99051 -9.93280 -9.55948 -9.53420 -9.33849 -8.52168 -8.17445 -8.00214 -6.45285 -3.86170 0.03855 0.51796 2.41709 2.65867 3.18220 3.24299 3.27744 3.28707 3.50051 3.80399 3.84583 3.93658 4.18447 4.19853 4.23007 4.26182 4.29249 4.56549 4.63389 4.86345 5.03557 5.11301 5.18754 5.21594 5.26799 5.29863 5.40780 5.49349 5.55747 5.64787 5.84640 5.91435 5.99321 6.06492 6.20167 7.03346 7.05744 7.23954 7.46286 7.52052 7.69173 7.78735 8.02101 8.56912 9.14299 9.49648 10.00925 10.72269 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.002778 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.713935 B =10076.723539 C =12647.124223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.047 3.953 13 N -0.653 5.653 14 C 0.075 3.925 15 H 0.062 0.938 16 C 0.091 3.909 17 O -0.554 6.554 18 C 0.122 3.878 19 N -0.722 5.722 20 C 0.568 3.432 21 O -0.528 6.528 22 C -0.157 4.157 23 C 0.129 3.871 24 N -0.453 5.453 25 C 0.099 3.901 26 C 0.042 3.958 27 F -0.125 7.125 28 C -0.051 4.051 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.348 0.652 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.374 0.626 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.399 0.601 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -18.499 7.451 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.086 4.086 13 N -0.289 5.289 14 C -0.036 4.036 15 H 0.080 0.920 16 C 0.012 3.988 17 O -0.358 6.358 18 C -0.001 4.001 19 N -0.375 5.375 20 C 0.353 3.647 21 O -0.404 6.404 22 C -0.163 4.163 23 C -0.030 4.030 24 N -0.160 5.160 25 C -0.059 4.059 26 C 0.021 3.979 27 F -0.104 7.104 28 C -0.078 4.078 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.169 0.831 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.220 0.780 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.235 0.765 40 H 0.185 0.815 41 H 0.192 0.808 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.209 -18.151 7.362 19.624 hybrid contribution -0.650 0.292 0.313 0.778 sum 0.559 -17.859 7.674 19.446 Atomic orbital electron populations 1.69594 1.05946 1.28322 1.50458 1.25252 0.95625 0.99728 0.97211 0.85924 0.78790 0.80426 0.79142 1.19864 1.20970 1.19852 1.19655 0.93364 0.82200 1.47749 0.87944 1.41848 1.09156 1.04584 1.64275 1.19733 0.88400 0.84615 0.84835 1.90547 1.13659 1.86942 1.55260 1.21805 0.94336 0.91197 1.01218 1.60001 1.18436 0.98940 1.51483 1.21908 0.96048 0.90162 0.95474 0.92003 1.22064 0.86930 0.98517 0.91280 1.86604 1.30693 1.92124 1.26380 1.21569 1.00185 0.96646 0.81729 1.45948 1.50151 1.22774 1.18603 1.17804 0.78619 0.84233 0.84040 1.90807 1.55681 1.22308 1.71649 1.20907 1.01812 0.96985 0.96552 1.23143 0.95665 0.92544 0.91607 1.67805 1.10287 1.32496 1.05456 1.23228 0.92998 0.89168 1.00536 1.18669 0.95742 0.92624 0.90892 1.91559 1.70008 1.75349 1.73441 1.21766 0.93825 1.00803 0.91425 0.91789 0.77497 0.89493 0.93806 0.83092 0.93607 0.92926 0.78028 0.90592 0.88662 0.76512 0.81545 0.80830 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.71 5.29 -10.97 -0.06 -13.77 16 10 C 0.44 9.88 7.82 -10.99 -0.09 9.80 16 11 O -0.58 -15.33 15.78 5.55 0.09 -15.24 16 12 C 0.05 0.75 5.96 -4.97 -0.03 0.72 16 13 N -0.65 -9.66 5.87 -107.99 -0.63 -10.29 16 14 C 0.07 0.81 2.60 -67.71 -0.18 0.63 16 15 H 0.06 0.55 7.80 -51.93 -0.40 0.14 16 16 C 0.09 0.91 6.80 37.16 0.25 1.16 16 17 O -0.55 -6.44 12.64 -35.23 -0.45 -6.88 16 18 C 0.12 1.32 5.20 -4.05 -0.02 1.30 16 19 N -0.72 -7.48 4.94 -61.25 -0.30 -7.78 16 20 C 0.57 6.70 7.78 -12.33 -0.10 6.61 16 21 O -0.53 -7.81 16.42 5.32 0.09 -7.72 16 22 C -0.16 -1.62 5.89 -104.83 -0.62 -2.23 16 23 C 0.13 1.26 10.71 -17.13 -0.18 1.08 16 24 N -0.45 -4.76 10.34 -12.86 -0.13 -4.89 16 25 C 0.10 0.86 11.16 -17.39 -0.19 0.67 16 26 C 0.04 0.38 7.33 -39.33 -0.29 0.09 16 27 F -0.12 -1.14 17.28 2.25 0.04 -1.10 16 28 C -0.05 -0.50 9.70 -38.80 -0.38 -0.87 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.39 9.09 7.90 -40.82 -0.32 8.76 16 31 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 32 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.35 5.29 6.41 -39.29 -0.25 5.03 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.54 7.35 -51.93 -0.38 0.15 16 36 H 0.37 2.69 9.12 45.56 0.42 3.11 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.29 7.39 -51.92 -0.38 0.90 16 39 H 0.40 3.56 5.44 -40.82 -0.22 3.33 16 40 H 0.17 1.33 6.42 -52.49 -0.34 1.00 16 41 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.16 1.47 7.73 -52.49 -0.41 1.06 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -35.10 369.43 -6.02 -41.12 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -3.87 Total: 17.38 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -2.06 Total: 11.14 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.40 Total: -60.02 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.27 Total: -29.85 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.10 -6.02 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734363816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.334 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds