Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86807 * 119.99829 * 2 1 4 4 H 1.48505 * 109.46886 * 239.99734 * 3 2 1 5 5 H 1.48499 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47126 * 119.99921 * 3 2 1 7 7 C 1.38947 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00290 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99668 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00438 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99763 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47105 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00071 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47040 * 324.99983 * 14 13 12 16 16 C 1.53002 * 109.47053 * 84.99749 * 14 13 12 17 17 O 1.42905 * 109.46911 * 65.00374 * 16 14 13 18 18 C 1.52993 * 109.47378 * 205.00194 * 14 13 12 19 19 N 1.46499 * 109.47066 * 54.99529 * 18 14 13 20 20 C 1.34777 * 119.99908 * 180.02562 * 19 18 14 21 21 O 1.21555 * 120.00078 * 0.02562 * 20 19 18 22 22 C 1.47845 * 120.00355 * 180.02562 * 20 19 18 23 23 C 1.39561 * 120.54301 * 359.72224 * 22 20 19 24 24 N 1.31654 * 120.62235 * 179.68172 * 23 22 20 25 25 C 1.31935 * 121.90669 * 0.63291 * 24 23 22 26 26 C 1.38543 * 121.04433 * 359.65210 * 25 24 23 27 27 F 1.35098 * 120.37210 * 180.02562 * 26 25 24 28 28 C 1.38609 * 119.25194 * 0.02572 * 26 25 24 29 29 H 0.97000 * 120.00191 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00136 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47315 * 60.00555 * 12 10 9 32 32 H 1.08996 * 109.47653 * 300.00085 * 12 10 9 33 33 H 1.00897 * 111.00222 * 56.05059 * 13 12 10 34 34 H 1.09003 * 109.47073 * 184.99730 * 16 14 13 35 35 H 1.09002 * 109.47495 * 305.00162 * 16 14 13 36 36 H 0.96700 * 113.99414 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47744 * 174.99896 * 18 14 13 38 38 H 1.09009 * 109.46953 * 294.99788 * 18 14 13 39 39 H 0.97001 * 120.00576 * 0.02562 * 19 18 14 40 40 H 1.08001 * 119.68920 * 0.02562 * 23 22 20 41 41 H 1.08009 * 119.48246 * 179.67959 * 25 24 23 42 42 H 1.07992 * 120.86770 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2438 -4.8628 0.0011 13 7 2.1985 -5.9794 0.0016 14 6 1.4982 -7.2708 0.0016 15 1 0.5848 -7.1888 0.5907 16 6 1.1450 -7.6594 -1.4355 17 8 2.3459 -7.8805 -2.1779 18 6 2.4040 -8.3422 0.6117 19 7 2.8389 -7.9135 1.9433 20 6 3.6499 -8.7038 2.6743 21 8 4.0208 -9.7721 2.2284 22 6 4.0884 -8.2716 4.0184 23 6 3.6742 -7.0448 4.5391 24 7 4.0586 -6.6611 5.7384 25 6 4.8522 -7.4032 6.4869 26 6 5.3122 -8.6315 6.0408 27 9 6.1239 -9.3805 6.8188 28 6 4.9304 -9.0831 4.7872 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6169 -4.9209 -0.8886 32 1 0.6175 -4.9205 0.8913 33 1 2.8333 -5.9121 0.7830 34 1 0.5487 -8.5718 -1.4291 35 1 0.5738 -6.8553 -1.8995 36 1 2.1976 -8.1314 -3.1000 37 1 1.8540 -9.2797 0.6934 38 1 3.2760 -8.4871 -0.0262 39 1 2.5433 -7.0609 2.2991 40 1 3.0276 -6.4067 3.9550 41 1 5.1474 -7.0477 7.4632 42 1 5.2733 -10.0366 4.4137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734363816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -147.497485 kcal Electronic energy + Delta-G solvation = -28650.776791 eV Core-core repulsion = 24158.584818 eV Total energy + Delta-G solvation = -4492.191973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.13847 -41.81088 -40.46098 -40.02295 -38.71289 -36.61253 -35.96275 -35.04669 -33.80493 -33.24362 -32.44662 -31.07168 -27.92424 -27.35794 -25.80353 -25.18401 -24.80511 -22.03745 -21.57490 -21.11019 -19.94566 -19.61748 -18.65861 -18.33293 -18.10608 -17.97911 -17.32270 -17.05669 -16.91726 -16.68633 -16.59096 -16.35912 -15.95300 -15.58764 -15.24775 -15.04453 -15.01800 -14.68573 -14.58153 -14.44850 -14.34158 -14.01076 -13.56875 -13.51402 -13.39884 -13.06046 -12.89158 -12.67114 -12.41003 -12.11921 -12.01916 -11.64535 -11.48202 -11.20180 -10.77820 -10.73186 -10.37708 -10.31232 -10.15620 -9.98850 -9.30703 -8.44901 -5.92850 -0.71951 -0.23302 1.40763 1.43177 1.53220 1.55454 1.81465 2.08678 2.30157 2.49344 2.76563 2.86269 3.08609 3.23100 3.43116 3.46260 3.48915 3.51461 3.56724 3.78607 3.90955 4.15266 4.28848 4.32302 4.40857 4.48421 4.56000 4.57357 4.64626 4.67805 4.72778 4.80869 5.01213 5.17550 5.30049 5.43149 5.89234 6.10709 6.19528 6.33226 6.50471 6.62979 6.90103 7.09138 7.15563 7.59674 8.15538 8.72094 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.002778 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.713935 B =10076.723539 C =12647.124223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.062 3.938 13 N -0.674 5.674 14 C 0.077 3.923 15 H 0.093 0.907 16 C 0.087 3.913 17 O -0.583 6.583 18 C 0.128 3.872 19 N -0.713 5.713 20 C 0.568 3.432 21 O -0.563 6.563 22 C -0.166 4.166 23 C 0.130 3.870 24 N -0.474 5.474 25 C 0.107 3.893 26 C 0.043 3.957 27 F -0.125 7.125 28 C -0.055 4.055 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.342 0.658 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.390 0.610 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.407 0.593 40 H 0.181 0.819 41 H 0.203 0.797 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -18.650 8.103 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.070 4.070 13 N -0.309 5.309 14 C -0.033 4.033 15 H 0.111 0.889 16 C 0.008 3.992 17 O -0.390 6.390 18 C 0.005 3.995 19 N -0.365 5.365 20 C 0.355 3.645 21 O -0.443 6.443 22 C -0.171 4.171 23 C -0.028 4.028 24 N -0.182 5.182 25 C -0.052 4.052 26 C 0.021 3.979 27 F -0.103 7.103 28 C -0.082 4.082 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.238 0.762 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.245 0.755 40 H 0.198 0.802 41 H 0.219 0.781 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.066 -18.303 7.999 19.975 hybrid contribution -0.232 0.267 0.113 0.372 sum -0.298 -18.036 8.113 19.779 Atomic orbital electron populations 1.69645 1.06691 1.29291 1.50368 1.25953 0.96494 1.02192 0.96372 0.85063 0.77839 0.77022 0.78888 1.19983 1.19522 1.19692 1.19591 0.92636 0.84129 1.49880 0.90513 1.41904 1.09316 1.04617 1.65098 1.20906 0.88245 0.86202 0.82178 1.90518 1.16012 1.87941 1.56530 1.21666 0.93905 0.87756 1.03630 1.59982 1.18976 1.00217 1.51751 1.22069 0.96610 0.87792 0.96780 0.88923 1.22217 0.86629 0.99994 0.90344 1.86562 1.32105 1.92350 1.27944 1.21474 0.99243 0.97487 0.81297 1.45887 1.49527 1.22829 1.18289 1.18011 0.78246 0.83788 0.84469 1.90786 1.57126 1.23851 1.72546 1.20777 1.02744 0.97538 0.96035 1.23350 0.95465 0.92353 0.91624 1.67872 1.11251 1.33150 1.05885 1.23667 0.91697 0.88576 1.01213 1.18641 0.95802 0.92809 0.90608 1.91562 1.70006 1.75392 1.73360 1.21866 0.93655 1.00872 0.91777 0.91327 0.76891 0.87708 0.90359 0.83750 0.90423 0.93028 0.76157 0.89101 0.91550 0.75545 0.80205 0.78069 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.30 13.05 21.66 0.28 -48.01 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -27.99 5.29 -306.99 -1.62 -29.61 16 10 C 0.44 19.59 7.82 87.66 0.69 20.28 16 11 O -0.62 -33.52 15.78 -3.07 -0.05 -33.57 16 12 C 0.06 1.86 5.96 85.56 0.51 2.37 16 13 N -0.67 -18.88 5.87 -495.56 -2.91 -21.79 16 14 C 0.08 1.47 2.60 44.91 0.12 1.59 16 15 H 0.09 1.25 7.80 -2.38 -0.02 1.23 16 16 C 0.09 1.51 6.80 71.98 0.49 2.00 16 17 O -0.58 -12.87 12.64 -148.98 -1.88 -14.75 16 18 C 0.13 2.62 5.20 86.38 0.45 3.07 16 19 N -0.71 -14.08 4.94 -465.97 -2.30 -16.38 16 20 C 0.57 13.29 7.78 86.79 0.68 13.97 16 21 O -0.56 -16.85 16.42 -3.89 -0.06 -16.91 16 22 C -0.17 -3.33 5.89 -20.00 -0.12 -3.45 16 23 C 0.13 2.43 10.71 85.04 0.91 3.34 16 24 N -0.47 -9.36 10.34 -194.58 -2.01 -11.37 16 25 C 0.11 1.69 11.16 84.75 0.95 2.63 16 26 C 0.04 0.73 7.33 22.43 0.16 0.89 16 27 F -0.12 -2.12 17.28 44.97 0.78 -1.35 16 28 C -0.05 -1.04 9.70 22.77 0.22 -0.82 16 29 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.40 18.25 7.90 -92.71 -0.73 17.52 16 31 H 0.10 2.80 7.36 -2.39 -0.02 2.78 16 32 H 0.08 1.83 8.06 -2.39 -0.02 1.81 16 33 H 0.34 10.10 6.41 -89.70 -0.58 9.52 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.91 7.35 -2.39 -0.02 0.89 16 36 H 0.39 5.19 9.12 -74.06 -0.68 4.51 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.79 7.39 -2.38 -0.02 1.77 16 39 H 0.41 6.69 5.44 -92.71 -0.50 6.19 16 40 H 0.18 2.67 6.42 -2.91 -0.02 2.66 16 41 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.16 2.99 7.73 -2.91 -0.02 2.96 16 Total: -1.00 -76.83 369.43 -2.78 -79.61 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -1.35 Total: 41.65 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: 6.33 Total: 28.18 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -8.57 Total: -127.17 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: -2.00 Total: -65.24 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.35 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.83 -2.78 -79.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734363816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.892 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds