Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47074 * 35.00312 * 14 13 12 16 16 C 1.52996 * 109.47518 * 275.00138 * 14 13 12 17 17 O 1.42900 * 109.46993 * 295.00041 * 16 14 13 18 18 C 1.53003 * 109.47236 * 154.99590 * 14 13 12 19 19 N 1.46498 * 109.47370 * 305.00500 * 18 14 13 20 20 C 1.34779 * 120.00115 * 179.97438 * 19 18 14 21 21 O 1.21550 * 119.99665 * 359.97438 * 20 19 18 22 22 C 1.47843 * 120.00078 * 180.02562 * 20 19 18 23 23 C 1.39561 * 120.54569 * 359.72500 * 22 20 19 24 24 N 1.31654 * 120.62293 * 179.68204 * 23 22 20 25 25 C 1.31942 * 121.90671 * 0.63164 * 24 23 22 26 26 C 1.38543 * 121.04292 * 359.65437 * 25 24 23 27 27 F 1.35099 * 120.37663 * 179.97438 * 26 25 24 28 28 C 1.38610 * 119.25286 * 0.02562 * 26 25 24 29 29 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 34 34 H 1.09003 * 109.47323 * 54.99778 * 16 14 13 35 35 H 1.09002 * 109.47449 * 175.00109 * 16 14 13 36 36 H 0.96697 * 114.00205 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46720 * 65.00010 * 18 14 13 38 38 H 1.08994 * 109.47381 * 185.00037 * 18 14 13 39 39 H 0.96999 * 119.99750 * 359.97438 * 19 18 14 40 40 H 1.08005 * 119.68993 * 359.97438 * 23 22 20 41 41 H 1.08000 * 119.48344 * 179.67889 * 25 24 23 42 42 H 1.08000 * 120.87091 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 1.4977 -7.2708 -0.0035 15 1 0.5817 -7.1878 -0.5885 16 6 1.1509 -7.6619 1.4344 17 8 2.3551 -7.8844 2.1710 18 6 2.4007 -8.3413 -0.6197 19 7 2.8297 -7.9104 -1.9525 20 6 3.6373 -8.6995 -2.6885 21 8 4.0101 -9.7685 -2.2461 22 6 4.0706 -8.2644 -4.0333 23 6 3.6457 -7.0413 -4.5542 24 7 4.0356 -6.6495 -5.7491 25 6 4.8250 -7.3908 -6.5029 26 6 5.2862 -8.6204 -6.0614 27 9 6.0935 -9.3686 -6.8447 28 6 4.9090 -9.0747 -4.8074 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 0.0016 31 1 0.6209 -4.9225 0.8949 32 1 0.6128 -4.9187 -0.8850 33 1 2.8365 -5.9142 0.7741 34 1 0.5819 -6.8586 1.9023 35 1 0.5545 -8.5743 1.4290 36 1 2.2110 -8.1362 3.0935 37 1 3.2756 -8.4872 0.0140 38 1 1.8503 -9.2785 -0.7005 39 1 2.5325 -7.0571 -2.3053 40 1 2.9945 -6.4082 -3.9697 41 1 5.1166 -7.0333 -7.4794 42 1 5.2535 -10.0289 -4.4370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734363817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -123.845517 kcal Electronic energy + Delta-G solvation = -28628.844734 eV Core-core repulsion = 24137.678387 eV Total energy + Delta-G solvation = -4491.166346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.32583 -40.80929 -39.33037 -38.56637 -37.68000 -35.56577 -34.26658 -33.74450 -32.88565 -31.56555 -31.25089 -29.98922 -26.48339 -26.23490 -24.47761 -23.97711 -23.85525 -21.03215 -20.85871 -19.40141 -18.56206 -18.01337 -17.75269 -17.58548 -17.24047 -16.62340 -16.21020 -16.18160 -15.70695 -15.58453 -15.32584 -14.82981 -14.58886 -14.37169 -14.21205 -13.93685 -13.85559 -13.74308 -13.54285 -13.42766 -13.25429 -12.71216 -12.43284 -12.16464 -11.89820 -11.69486 -11.51925 -11.37002 -11.09480 -10.60823 -10.36990 -10.28355 -10.27451 -10.23204 -9.80325 -9.56039 -9.42334 -9.08568 -8.56356 -8.18892 -8.00776 -6.46130 -3.86837 0.17643 0.63607 2.58480 2.89867 3.13799 3.25061 3.32229 3.42684 3.63040 3.83613 3.85664 3.96132 4.11685 4.32781 4.33632 4.38048 4.43202 4.63722 4.75372 4.84770 5.07478 5.12453 5.16795 5.18015 5.23192 5.35333 5.42274 5.55377 5.59920 5.69791 5.85589 5.95334 6.12422 6.19095 6.31059 7.04521 7.34474 7.37530 7.42366 7.51789 7.57022 8.01983 8.03531 8.56158 9.13965 9.49268 10.00332 10.71560 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009115 B = 0.002780 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.239189 B =10071.082016 C =12649.251735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.047 3.953 13 N -0.661 5.661 14 C 0.073 3.927 15 H 0.096 0.904 16 C 0.047 3.953 17 O -0.565 6.565 18 C 0.137 3.863 19 N -0.701 5.701 20 C 0.562 3.438 21 O -0.540 6.540 22 C -0.154 4.154 23 C 0.131 3.869 24 N -0.455 5.455 25 C 0.097 3.903 26 C 0.040 3.960 27 F -0.127 7.127 28 C -0.053 4.053 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.364 0.636 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.381 0.619 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.409 0.591 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -18.202 -5.421 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.086 4.086 13 N -0.295 5.295 14 C -0.038 4.038 15 H 0.114 0.886 16 C -0.034 4.034 17 O -0.371 6.371 18 C 0.013 3.987 19 N -0.352 5.352 20 C 0.347 3.653 21 O -0.418 6.418 22 C -0.160 4.160 23 C -0.027 4.027 24 N -0.162 5.162 25 C -0.062 4.062 26 C 0.018 3.982 27 F -0.105 7.105 28 C -0.081 4.081 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.189 0.811 41 H 0.190 0.810 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.940 -17.822 -6.676 19.054 hybrid contribution -0.654 0.251 1.523 1.676 sum 0.286 -17.571 -5.153 18.313 Atomic orbital electron populations 1.69614 1.05947 1.28100 1.50649 1.25258 0.95629 0.99744 0.97268 0.85809 0.79769 0.81122 0.77726 1.19180 1.20690 1.20788 1.19749 0.93402 0.82182 1.47470 0.87854 1.41864 1.09164 1.04625 1.64305 1.19756 0.88401 0.84638 0.84755 1.90551 1.13673 1.86974 1.55238 1.21768 0.94474 0.91226 1.01118 1.60159 1.17904 0.98837 1.52552 1.22006 0.97437 0.90777 0.93576 0.88616 1.22830 0.87207 0.99868 0.93452 1.86489 1.31058 1.92217 1.27311 1.21279 0.99355 0.95565 0.82502 1.45700 1.49293 1.22683 1.17568 1.17835 0.78965 0.84357 0.84145 1.90783 1.56207 1.22675 1.72151 1.20950 1.01504 0.96918 0.96586 1.23233 0.95517 0.92513 0.91484 1.67814 1.10376 1.32432 1.05573 1.23200 0.93285 0.89219 1.00471 1.18671 0.95979 0.92703 0.90847 1.91549 1.70336 1.75459 1.73197 1.21760 0.94118 1.00769 0.91407 0.91907 0.77518 0.93854 0.89557 0.81411 0.92895 0.93028 0.77192 0.89927 0.91235 0.75365 0.81136 0.81000 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -13.58 5.29 -10.96 -0.06 -13.63 16 10 C 0.44 9.69 7.82 -10.98 -0.09 9.60 16 11 O -0.58 -15.08 15.78 5.54 0.09 -14.99 16 12 C 0.05 0.72 5.96 -4.98 -0.03 0.69 16 13 N -0.66 -9.22 5.32 -107.99 -0.57 -9.79 16 14 C 0.07 0.74 2.57 -67.71 -0.17 0.57 16 15 H 0.10 0.81 7.80 -51.93 -0.41 0.40 16 16 C 0.05 0.41 6.72 37.16 0.25 0.66 16 17 O -0.57 -5.55 12.05 -35.23 -0.42 -5.97 16 18 C 0.14 1.52 5.26 -4.04 -0.02 1.49 16 19 N -0.70 -7.98 5.34 -61.25 -0.33 -8.31 16 20 C 0.56 7.20 7.78 -12.33 -0.10 7.10 16 21 O -0.54 -8.45 16.42 5.32 0.09 -8.37 16 22 C -0.15 -1.74 5.89 -104.83 -0.62 -2.36 16 23 C 0.13 1.42 10.71 -17.13 -0.18 1.24 16 24 N -0.45 -5.19 10.34 -12.86 -0.13 -5.33 16 25 C 0.10 0.92 11.16 -17.39 -0.19 0.73 16 26 C 0.04 0.39 7.33 -39.33 -0.29 0.10 16 27 F -0.13 -1.24 17.28 2.25 0.04 -1.20 16 28 C -0.05 -0.56 9.70 -38.80 -0.38 -0.94 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16 31 H 0.04 0.60 7.36 -51.93 -0.38 0.22 16 32 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.36 5.92 7.64 -39.29 -0.30 5.62 16 34 H 0.05 0.46 7.35 -51.93 -0.38 0.08 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 2.13 9.12 45.56 0.42 2.55 16 37 H 0.08 1.11 7.39 -51.93 -0.38 0.72 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.41 4.33 6.20 -40.82 -0.25 4.08 16 40 H 0.17 1.62 6.42 -52.48 -0.34 1.28 16 41 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.16 1.59 7.73 -52.49 -0.41 1.19 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -33.99 370.62 -6.03 -40.02 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -3.95 Total: 18.38 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -2.06 Total: 11.13 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.37 Total: -60.25 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.25 Total: -29.33 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.99 -6.03 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734363817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.826 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds