Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48502 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46991 * 299.99595 * 3 2 1 6 6 H 1.48501 * 109.46940 * 59.99841 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 H 1.09006 * 110.88912 * 322.84721 * 14 13 11 16 16 C 1.55155 * 111.00563 * 86.73329 * 14 13 11 17 17 C 1.54319 * 102.94326 * 153.57676 * 16 14 13 18 18 N 1.47016 * 107.27339 * 337.80552 * 17 16 14 19 19 C 1.34784 * 125.65263 * 178.99046 * 18 17 16 20 20 O 1.21277 * 120.00090 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99474 * 359.97270 * 19 18 17 22 22 C 1.53001 * 119.80510 * 248.97385 * 21 19 18 23 23 C 1.54506 * 122.36168 * 176.59868 * 21 19 18 24 24 H 1.09005 * 122.36897 * 359.45515 * 23 21 19 25 25 C 1.54479 * 104.06444 * 223.21904 * 23 21 19 26 26 O 1.44423 * 104.79953 * 336.02289 * 25 23 21 27 27 C 1.44419 * 105.27621 * 40.51089 * 26 25 23 28 28 C 1.47421 * 108.70311 * 358.94361 * 18 17 16 29 29 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 31 31 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 32 32 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 33 33 H 1.09000 * 110.71770 * 271.93743 * 16 14 13 34 34 H 1.08998 * 110.71765 * 35.21177 * 16 14 13 35 35 H 1.09002 * 109.88821 * 97.22362 * 17 16 14 36 36 H 1.09006 * 109.88383 * 218.23248 * 17 16 14 37 37 H 1.08999 * 117.43629 * 355.37396 * 22 21 19 38 38 H 1.09002 * 117.43059 * 140.01811 * 22 21 19 39 39 H 1.09006 * 110.37050 * 217.19510 * 25 23 21 40 40 H 1.08998 * 110.37340 * 94.85191 * 25 23 21 41 41 H 1.09006 * 110.37604 * 200.65589 * 27 26 25 42 42 H 1.08996 * 110.37172 * 78.31983 * 27 26 25 43 43 H 1.09009 * 110.36539 * 265.28853 * 28 18 17 44 44 H 1.08997 * 110.36976 * 142.96782 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 1 1.4367 -7.7923 0.6267 16 6 2.0517 -8.2115 -1.4359 17 6 2.2022 -9.7422 -1.3099 18 7 3.0297 -10.0033 -0.1231 19 6 3.3761 -11.2205 0.3408 20 8 4.0663 -11.3173 1.3333 21 6 2.9058 -12.4610 -0.3740 22 6 1.8774 -13.3781 0.2910 23 6 3.3327 -13.8799 0.0640 24 1 4.0021 -14.0539 0.9064 25 6 3.6543 -14.6016 -1.2634 26 8 2.8953 -13.8889 -2.2642 27 6 3.0201 -12.4934 -1.9142 28 6 3.4188 -8.7133 0.4750 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7313 0.8906 31 1 3.1245 -3.7313 -0.8893 32 1 3.8009 -6.1835 0.0004 33 1 1.0406 -7.9477 -1.7459 34 1 2.7874 -7.8077 -2.1314 35 1 1.2217 -10.2023 -1.1866 36 1 2.6894 -10.1413 -2.1995 37 1 1.5731 -13.1364 1.3093 38 1 1.0987 -13.8023 -0.3429 39 1 3.3359 -15.6430 -1.2159 40 1 4.7207 -14.5395 -1.4804 41 1 2.2145 -11.9151 -2.3666 42 1 3.9892 -12.1079 -2.2309 43 1 4.3983 -8.4055 0.1089 44 1 3.4250 -8.7858 1.5625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744341808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = -69.809499 kcal Electronic energy + Delta-G solvation = -26519.622886 eV Core-core repulsion = 22564.720143 eV Total energy + Delta-G solvation = -3954.902744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 6.32 seconds Orbital eigenvalues (eV) -41.43539 -40.04076 -39.01823 -37.56370 -34.79412 -34.28002 -32.46376 -31.32637 -30.05486 -29.34808 -28.02278 -26.34364 -25.53483 -24.73820 -22.21536 -21.64585 -21.23543 -20.52387 -19.42611 -18.00140 -17.80520 -17.08703 -16.49599 -16.42232 -16.25888 -15.81425 -15.52221 -15.02783 -14.84079 -14.78021 -14.55854 -13.93829 -13.89731 -13.67619 -13.44151 -13.29634 -13.09744 -12.93784 -12.64622 -12.55415 -12.34819 -12.03178 -11.92820 -11.67256 -11.15573 -11.10861 -11.09500 -11.05676 -10.79150 -10.71785 -10.20516 -10.18119 -9.84773 -9.53057 -9.15462 -9.11107 -9.03690 -8.28455 -6.54500 -6.25478 -3.96365 2.00581 2.27584 2.91260 2.95566 2.98465 3.19247 3.24935 3.28163 3.31327 3.62734 3.82789 3.94205 4.02338 4.16599 4.19643 4.30563 4.35294 4.57818 4.68542 4.81050 4.83694 4.85561 5.00716 5.06606 5.08809 5.10060 5.11275 5.19169 5.20002 5.24519 5.36456 5.45408 5.53635 5.57553 5.69178 5.79488 5.82173 5.88711 6.08107 6.10444 6.46651 7.00190 7.54871 7.57073 7.68527 8.31833 8.48228 9.20238 10.81957 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.039323 B = 0.001758 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.883590 B =15921.035297 C =16083.426354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.730 5.730 14 C 0.138 3.862 15 H 0.105 0.895 16 C -0.146 4.146 17 C 0.096 3.904 18 N -0.611 5.611 19 C 0.579 3.421 20 O -0.534 6.534 21 C -0.212 4.212 22 C -0.101 4.101 23 C -0.163 4.163 24 H 0.135 0.865 25 C 0.069 3.931 26 O -0.367 6.367 27 C 0.081 3.919 28 C 0.102 3.898 29 H 0.268 0.732 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.401 0.599 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -27.942 -3.530 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.386 6.386 13 N -0.385 5.385 14 C 0.031 3.969 15 H 0.123 0.877 16 C -0.185 4.185 17 C -0.027 4.027 18 N -0.345 5.345 19 C 0.367 3.633 20 O -0.410 6.410 21 C -0.215 4.215 22 C -0.138 4.138 23 C -0.182 4.182 24 H 0.153 0.847 25 C -0.008 4.008 26 O -0.285 6.285 27 C 0.004 3.996 28 C -0.021 4.021 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.235 0.765 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.425 -28.368 -3.162 29.258 hybrid contribution 2.631 1.615 0.145 3.091 sum 9.057 -26.753 -3.017 28.405 Atomic orbital electron populations 1.70027 1.05953 1.27396 1.46873 1.24997 0.95036 0.99066 0.94495 0.86111 0.79581 0.81845 0.77927 1.19612 1.20547 1.20549 1.22904 0.94954 0.91594 1.58946 0.90834 1.85402 1.04780 0.96381 1.96732 1.23536 1.06715 0.95115 1.05080 1.20344 0.86480 0.86190 0.74747 1.90710 1.15300 1.85492 1.47145 1.45865 1.10111 1.04471 1.78024 1.21925 0.97200 0.81246 0.96517 0.87731 1.23121 1.04579 0.92820 0.97954 1.22301 0.95413 0.97123 0.87814 1.48198 1.52092 1.05006 1.29186 1.18666 0.79235 0.81922 0.83474 1.90733 1.38160 1.86120 1.26037 1.23088 1.09985 0.91739 0.96693 1.23334 0.91474 0.97262 1.01718 1.24640 0.99666 0.93183 1.00684 0.84711 1.23029 0.96407 0.97092 0.84235 1.89199 1.72428 1.17267 1.49640 1.23048 1.02587 0.84216 0.89760 1.22387 0.97697 0.82135 0.99870 0.92203 0.89083 0.89084 0.76494 0.88708 0.89823 0.90510 0.90726 0.87022 0.87127 0.87962 0.90879 0.87709 0.91053 0.90619 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 11 C 0.54 9.18 7.85 -10.99 -0.09 9.09 16 12 O -0.51 -10.81 15.61 5.55 0.09 -10.72 16 13 N -0.73 -8.56 5.23 -51.73 -0.27 -8.84 16 14 C 0.14 1.43 3.32 -65.78 -0.22 1.21 16 15 H 0.10 1.29 7.73 -51.93 -0.40 0.89 16 16 C -0.15 -1.26 6.65 -24.90 -0.17 -1.42 16 17 C 0.10 0.67 5.33 -3.07 -0.02 0.66 16 18 N -0.61 -5.53 3.33 -170.52 -0.57 -6.10 16 19 C 0.58 6.08 7.57 -10.98 -0.08 6.00 16 20 O -0.53 -7.49 17.11 5.56 0.10 -7.39 16 21 C -0.21 -1.68 2.48 -154.10 -0.38 -2.06 16 22 C -0.10 -0.68 9.84 -25.35 -0.25 -0.93 16 23 C -0.16 -1.13 7.04 -87.67 -0.62 -1.75 16 24 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 25 C 0.07 0.41 7.54 37.93 0.29 0.70 16 26 O -0.37 -2.91 11.32 -35.23 -0.40 -3.31 16 27 C 0.08 0.55 5.67 37.93 0.22 0.76 16 28 C 0.10 0.94 6.53 -2.53 -0.02 0.92 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 31 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 32 H 0.40 3.56 8.51 -40.82 -0.35 3.21 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.49 8.13 -51.93 -0.42 0.06 16 36 H 0.07 0.40 6.12 -51.93 -0.32 0.08 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.57 6.22 -51.93 -0.32 0.25 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.61 8.00 -51.92 -0.42 0.19 16 44 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -35.98 378.43 -9.18 -45.16 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.41 Total: 0.47 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.91 Total: -2.23 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.10 Total: -39.99 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.22 Total: -21.42 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.98 -9.18 -45.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744341808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.650 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.32 seconds