Wall clock time and date at job start Sat Apr 11 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.80990 * 100.00278 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47384 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99952 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99670 * 179.97438 * 13 11 10 15 15 H 1.09001 * 115.51640 * 9.58142 * 14 13 11 16 16 C 1.53000 * 117.44066 * 224.23542 * 14 13 11 17 17 H 1.09001 * 119.54054 * 4.12084 * 16 14 13 18 18 C 1.57699 * 116.10909 * 161.64010 * 16 14 13 19 19 N 1.48143 * 104.67408 * 87.30854 * 18 16 14 20 20 C 1.34780 * 127.83719 * 139.77478 * 19 18 16 21 21 O 1.21277 * 119.99838 * 179.97438 * 20 19 18 22 22 C 1.50707 * 119.99772 * 0.02562 * 20 19 18 23 23 H 1.09003 * 110.45403 * 302.60112 * 22 20 19 24 24 C 1.54507 * 110.50944 * 179.97438 * 22 20 19 25 25 C 1.54473 * 104.06406 * 241.35605 * 24 22 20 26 26 O 1.44426 * 104.80437 * 23.97829 * 25 24 22 27 27 C 1.44425 * 105.27311 * 319.48892 * 26 25 24 28 28 C 1.48144 * 104.32429 * 319.77122 * 19 18 16 29 29 C 1.53002 * 117.44163 * 154.99591 * 14 13 11 30 30 H 1.09002 * 119.54177 * 355.88085 * 29 14 13 31 31 H 0.96997 * 119.99773 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47475 * 300.00386 * 10 9 7 33 33 H 1.08999 * 109.47457 * 59.99863 * 10 9 7 34 34 H 0.96994 * 120.00661 * 359.97438 * 13 11 10 35 35 H 1.08995 * 110.92018 * 328.22922 * 18 16 14 36 36 H 1.09004 * 109.93415 * 205.89196 * 18 16 14 37 37 H 1.09010 * 110.50970 * 0.02562 * 24 22 20 38 38 H 1.09000 * 110.51382 * 122.56779 * 24 22 20 39 39 H 1.09001 * 110.37312 * 142.81366 * 25 24 22 40 40 H 1.08997 * 110.37003 * 265.14664 * 25 24 22 41 41 H 1.08999 * 110.37405 * 281.68135 * 27 26 25 42 42 H 1.09000 * 110.37292 * 159.34525 * 27 26 25 43 43 H 1.08997 * 110.41200 * 280.80031 * 28 19 18 44 44 H 1.09000 * 110.40700 * 158.37025 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2325 0.0010 12 8 6.3441 -2.2962 0.0015 13 7 6.0457 -4.4946 0.0005 14 6 7.4908 -4.7356 0.0011 15 1 8.1135 -3.8562 0.1656 16 6 8.0267 -5.8107 -0.9466 17 1 7.3435 -6.3112 -1.6328 18 6 9.5704 -5.7500 -1.2630 19 7 10.2065 -6.5362 -0.1804 20 6 11.2369 -7.3992 -0.2812 21 8 11.6481 -7.9705 0.7063 22 6 11.8786 -7.6534 -1.6210 23 1 11.1374 -8.0078 -2.3373 24 6 13.0312 -8.6732 -1.4844 25 6 14.2821 -7.8890 -1.9387 26 8 13.9460 -6.5011 -1.7233 27 6 12.5695 -6.3736 -2.1417 28 6 9.4533 -6.1585 1.0381 29 6 7.9836 -6.0658 0.5745 30 1 7.2683 -6.7564 1.0213 31 1 -0.4850 0.8400 -0.0004 32 1 3.6434 -3.4318 0.8895 33 1 3.6441 -3.4313 -0.8903 34 1 5.4292 -5.2434 -0.0002 35 1 9.9307 -4.7215 -1.2478 36 1 9.7694 -6.2074 -2.2322 37 1 13.1365 -8.9940 -0.4479 38 1 12.8599 -9.5323 -2.1330 39 1 15.1453 -8.1686 -1.3347 40 1 14.4816 -8.0717 -2.9946 41 1 12.5064 -6.3238 -3.2287 42 1 12.1171 -5.4890 -1.6936 43 1 9.7953 -5.1938 1.4126 44 1 9.5622 -6.9253 1.8051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744556196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:10 Heat of formation + Delta-G solvation = -72.376119 kcal Electronic energy + Delta-G solvation = -26219.789561 eV Core-core repulsion = 22264.775520 eV Total energy + Delta-G solvation = -3955.014041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21805 -40.09009 -39.00197 -38.10785 -35.00638 -33.00007 -32.49126 -32.40130 -30.07152 -29.28266 -28.67649 -26.26451 -25.64919 -23.84804 -22.49163 -21.69319 -20.84063 -20.58021 -19.63319 -18.02010 -17.84047 -16.99347 -16.88747 -16.67321 -16.56964 -15.85120 -15.42995 -15.15716 -15.12500 -15.02910 -14.28248 -14.00941 -13.92928 -13.62512 -13.33063 -13.10349 -13.04223 -12.85503 -12.83530 -12.48500 -12.36295 -11.99585 -11.97904 -11.85050 -11.44117 -11.31791 -11.20421 -11.04608 -10.75274 -10.66156 -10.38411 -10.05495 -9.90488 -9.70512 -9.23836 -9.05494 -8.95304 -8.57177 -6.98133 -6.33391 -4.06096 2.11691 2.33969 2.61631 2.64050 3.11470 3.26456 3.29870 3.44293 3.46421 3.52968 3.82134 3.99439 4.13288 4.24048 4.26851 4.28763 4.36865 4.51650 4.57886 4.62200 4.64840 4.72641 4.82707 4.92484 5.00591 5.03951 5.05703 5.08008 5.13322 5.22923 5.30276 5.37150 5.43349 5.57611 5.62422 5.66027 5.68639 5.71933 5.91798 6.22979 6.33690 7.04242 7.39318 7.67321 7.89443 8.29723 8.36864 9.12519 10.75737 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032550 B = 0.001755 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.002615 B =15947.728071 C =16365.610730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.537 3.463 12 O -0.513 6.513 13 N -0.708 5.708 14 C 0.131 3.869 15 H 0.140 0.860 16 C -0.186 4.186 17 H 0.130 0.870 18 C 0.127 3.873 19 N -0.623 5.623 20 C 0.548 3.452 21 O -0.532 6.532 22 C -0.143 4.143 23 H 0.112 0.888 24 C -0.148 4.148 25 C 0.045 3.955 26 O -0.369 6.369 27 C 0.055 3.945 28 C 0.135 3.865 29 C -0.187 4.187 30 H 0.124 0.876 31 H 0.271 0.729 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.403 0.597 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.474 -19.209 -5.621 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.324 3.676 12 O -0.386 6.386 13 N -0.360 5.360 14 C 0.024 3.976 15 H 0.158 0.842 16 C -0.207 4.207 17 H 0.148 0.852 18 C 0.004 3.996 19 N -0.357 5.357 20 C 0.337 3.663 21 O -0.409 6.409 22 C -0.165 4.165 23 H 0.130 0.870 24 C -0.186 4.186 25 C -0.032 4.032 26 O -0.288 6.288 27 C -0.023 4.023 28 C 0.013 3.987 29 C -0.208 4.208 30 H 0.142 0.858 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.238 0.762 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 25.035 -17.735 -5.000 31.085 hybrid contribution -1.588 -1.034 -0.163 1.902 sum 23.447 -18.769 -5.164 30.475 Atomic orbital electron populations 1.69936 1.05917 1.27826 1.47861 1.24713 0.94458 0.98982 0.93122 0.86738 0.81873 0.83273 0.79975 1.19171 1.19894 1.15919 1.22304 0.88178 0.97574 1.59035 0.89348 1.84810 1.09417 0.99596 1.97443 1.23281 0.93426 1.04788 1.06030 1.20342 0.90748 0.81879 0.74636 1.90709 1.58715 1.42031 1.47161 1.45342 1.05354 1.08520 1.76757 1.21610 0.83500 0.93478 0.99054 0.84233 1.24925 0.96476 1.05947 0.93346 0.85216 1.22481 0.89738 0.96460 0.90963 1.49153 1.32928 1.43161 1.10472 1.19901 0.78249 0.77357 0.90825 1.90696 1.62132 1.49154 1.38879 1.22700 0.99516 0.98611 0.95664 0.86974 1.23025 0.92613 0.97670 1.05246 1.23471 0.97987 0.81119 1.00593 1.89188 1.26795 1.26746 1.86053 1.23447 0.82483 0.96707 0.99633 1.21742 0.87536 1.01582 0.87841 1.24122 0.98003 1.01843 0.96818 0.85800 0.91889 0.88279 0.88242 0.76248 0.89624 0.89580 0.88120 0.89804 0.88675 0.91963 0.90762 0.88618 0.90156 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.05 13.97 55.49 0.78 -25.27 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 8 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 10 C -0.12 -2.24 6.16 36.01 0.22 -2.01 16 11 C 0.54 8.63 7.85 -10.99 -0.09 8.54 16 12 O -0.51 -10.17 15.43 5.55 0.09 -10.09 16 13 N -0.71 -7.73 5.56 -53.80 -0.30 -8.03 16 14 C 0.13 1.23 5.92 -67.93 -0.40 0.83 16 15 H 0.14 1.53 7.40 -51.93 -0.38 1.15 16 16 C -0.19 -1.28 7.34 -87.38 -0.64 -1.92 16 17 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 18 C 0.13 0.76 5.48 -0.57 0.00 0.76 16 19 N -0.62 -5.06 3.25 -167.17 -0.54 -5.61 16 20 C 0.55 5.29 7.18 -10.98 -0.08 5.21 16 21 O -0.53 -7.15 15.55 5.56 0.09 -7.07 16 22 C -0.14 -0.93 2.72 -90.20 -0.25 -1.18 16 23 H 0.11 0.46 7.87 -51.93 -0.41 0.05 16 24 C -0.15 -0.94 6.67 -25.17 -0.17 -1.11 16 25 C 0.05 0.28 7.63 37.93 0.29 0.57 16 26 O -0.37 -3.39 11.65 -35.23 -0.41 -3.80 16 27 C 0.05 0.35 6.64 37.93 0.25 0.60 16 28 C 0.14 1.11 6.85 -2.41 -0.02 1.10 16 29 C -0.19 -1.39 6.98 -89.21 -0.62 -2.01 16 30 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 33 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 34 H 0.40 3.27 8.83 -40.82 -0.36 2.91 16 35 H 0.09 0.50 8.12 -51.93 -0.42 0.07 16 36 H 0.09 0.34 7.07 -51.93 -0.37 -0.03 16 37 H 0.10 0.88 6.50 -51.92 -0.34 0.54 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.62 6.73 -51.93 -0.35 0.27 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -36.13 375.62 -9.06 -45.19 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.42 Total: 0.13 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.29 Total: -2.33 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.07 Total: -38.91 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.24 Total: -20.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.13 -9.06 -45.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744556196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.182 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds