Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.80990 * 100.00278 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47384 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99952 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99670 * 179.97438 * 13 11 10 15 15 H 1.09001 * 115.51640 * 9.58142 * 14 13 11 16 16 C 1.53000 * 117.44066 * 224.23542 * 14 13 11 17 17 H 1.09001 * 119.54054 * 4.12084 * 16 14 13 18 18 C 1.57699 * 116.10909 * 161.64010 * 16 14 13 19 19 N 1.48143 * 104.67408 * 87.30854 * 18 16 14 20 20 C 1.34780 * 127.83719 * 139.77478 * 19 18 16 21 21 O 1.21277 * 119.99838 * 179.97438 * 20 19 18 22 22 C 1.50707 * 119.99772 * 0.02562 * 20 19 18 23 23 H 1.09003 * 110.45403 * 302.60112 * 22 20 19 24 24 C 1.54507 * 110.50944 * 179.97438 * 22 20 19 25 25 C 1.54473 * 104.06406 * 241.35605 * 24 22 20 26 26 O 1.44426 * 104.80437 * 23.97829 * 25 24 22 27 27 C 1.44425 * 105.27311 * 319.48892 * 26 25 24 28 28 C 1.48144 * 104.32429 * 319.77122 * 19 18 16 29 29 C 1.53002 * 117.44163 * 154.99591 * 14 13 11 30 30 H 1.09002 * 119.54177 * 355.88085 * 29 14 13 31 31 H 0.96997 * 119.99773 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47475 * 300.00386 * 10 9 7 33 33 H 1.08999 * 109.47457 * 59.99863 * 10 9 7 34 34 H 0.96994 * 120.00661 * 359.97438 * 13 11 10 35 35 H 1.08995 * 110.92018 * 328.22922 * 18 16 14 36 36 H 1.09004 * 109.93415 * 205.89196 * 18 16 14 37 37 H 1.09010 * 110.50970 * 0.02562 * 24 22 20 38 38 H 1.09000 * 110.51382 * 122.56779 * 24 22 20 39 39 H 1.09001 * 110.37312 * 142.81366 * 25 24 22 40 40 H 1.08997 * 110.37003 * 265.14664 * 25 24 22 41 41 H 1.08999 * 110.37405 * 281.68135 * 27 26 25 42 42 H 1.09000 * 110.37292 * 159.34525 * 27 26 25 43 43 H 1.08997 * 110.41200 * 280.80031 * 28 19 18 44 44 H 1.09000 * 110.40700 * 158.37025 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2325 0.0010 12 8 6.3441 -2.2962 0.0015 13 7 6.0457 -4.4946 0.0005 14 6 7.4908 -4.7356 0.0011 15 1 8.1135 -3.8562 0.1656 16 6 8.0267 -5.8107 -0.9466 17 1 7.3435 -6.3112 -1.6328 18 6 9.5704 -5.7500 -1.2630 19 7 10.2065 -6.5362 -0.1804 20 6 11.2369 -7.3992 -0.2812 21 8 11.6481 -7.9705 0.7063 22 6 11.8786 -7.6534 -1.6210 23 1 11.1374 -8.0078 -2.3373 24 6 13.0312 -8.6732 -1.4844 25 6 14.2821 -7.8890 -1.9387 26 8 13.9460 -6.5011 -1.7233 27 6 12.5695 -6.3736 -2.1417 28 6 9.4533 -6.1585 1.0381 29 6 7.9836 -6.0658 0.5745 30 1 7.2683 -6.7564 1.0213 31 1 -0.4850 0.8400 -0.0004 32 1 3.6434 -3.4318 0.8895 33 1 3.6441 -3.4313 -0.8903 34 1 5.4292 -5.2434 -0.0002 35 1 9.9307 -4.7215 -1.2478 36 1 9.7694 -6.2074 -2.2322 37 1 13.1365 -8.9940 -0.4479 38 1 12.8599 -9.5323 -2.1330 39 1 15.1453 -8.1686 -1.3347 40 1 14.4816 -8.0717 -2.9946 41 1 12.5064 -6.3238 -3.2287 42 1 12.1171 -5.4890 -1.6936 43 1 9.7953 -5.1938 1.4126 44 1 9.5622 -6.9253 1.8051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744556196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -99.340546 kcal Electronic energy + Delta-G solvation = -26220.958827 eV Core-core repulsion = 22264.775520 eV Total energy + Delta-G solvation = -3956.183306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 5.68 seconds Orbital eigenvalues (eV) -41.87881 -40.91474 -39.93352 -38.88861 -35.91030 -34.66304 -33.81515 -33.11218 -30.85984 -30.32191 -29.23843 -27.86145 -26.93460 -24.37800 -23.09669 -22.39087 -21.89939 -21.28469 -20.24529 -19.86666 -18.52369 -17.97196 -17.75616 -17.39673 -17.37686 -17.08076 -16.45732 -16.41920 -16.09240 -15.92572 -15.68356 -15.08812 -14.83020 -14.68878 -14.57523 -14.05947 -13.88830 -13.73266 -13.64990 -13.34620 -13.32781 -13.01288 -12.96364 -12.65362 -12.62728 -12.47208 -12.35083 -12.00843 -11.94034 -11.86387 -11.35188 -11.16241 -11.14833 -10.94606 -10.63881 -10.52615 -9.92006 -9.86171 -8.98287 -8.50679 -6.21357 0.97867 1.32674 1.41293 1.45188 1.47741 1.54613 1.74525 2.11662 2.25812 2.54849 2.70744 2.87852 2.98887 3.28965 3.44717 3.51049 3.60224 3.66953 3.81280 3.88613 3.93386 4.10731 4.16162 4.24577 4.24901 4.37037 4.39041 4.48294 4.57708 4.61114 4.66469 4.71181 4.72351 4.81244 4.88411 4.94103 5.00061 5.07621 5.18623 5.42206 5.71460 5.78153 6.12583 6.40050 6.40302 6.94685 6.98317 7.14233 8.61533 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032550 B = 0.001755 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.002615 B =15947.728071 C =16365.610730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.174 6.174 10 C -0.112 4.112 11 C 0.543 3.457 12 O -0.557 6.557 13 N -0.683 5.683 14 C 0.107 3.893 15 H 0.121 0.879 16 C -0.161 4.161 17 H 0.151 0.849 18 C 0.123 3.877 19 N -0.621 5.621 20 C 0.540 3.460 21 O -0.581 6.581 22 C -0.138 4.138 23 H 0.146 0.854 24 C -0.147 4.147 25 C 0.042 3.958 26 O -0.405 6.405 27 C 0.053 3.947 28 C 0.129 3.871 29 C -0.173 4.173 30 H 0.137 0.863 31 H 0.276 0.724 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.420 0.580 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.454 -20.505 -7.536 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.263 4.263 11 C 0.329 3.671 12 O -0.434 6.434 13 N -0.335 5.335 14 C 0.000 4.000 15 H 0.139 0.861 16 C -0.182 4.182 17 H 0.168 0.832 18 C 0.001 3.999 19 N -0.354 5.354 20 C 0.330 3.670 21 O -0.461 6.461 22 C -0.159 4.159 23 H 0.164 0.836 24 C -0.185 4.185 25 C -0.034 4.034 26 O -0.324 6.324 27 C -0.024 4.024 28 C 0.007 3.993 29 C -0.193 4.193 30 H 0.155 0.845 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.258 0.742 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 26.001 -19.077 -6.935 32.986 hybrid contribution -1.834 -0.800 0.473 2.056 sum 24.167 -19.877 -6.462 31.951 Atomic orbital electron populations 1.70017 1.07319 1.28993 1.49148 1.25560 0.95255 1.02257 0.92925 0.85877 0.80756 0.79645 0.80157 1.18844 1.18471 1.15863 1.22471 0.90326 0.96684 1.58212 0.91864 1.84726 1.06334 1.06104 1.97596 1.23264 0.95549 0.99715 1.07736 1.19914 0.89410 0.83026 0.74706 1.90702 1.59219 1.43707 1.49779 1.44987 1.06618 1.07165 1.74682 1.21628 0.82012 0.93934 1.02459 0.86131 1.25028 0.97086 1.02961 0.93125 0.83169 1.22687 0.88834 0.96742 0.91618 1.49217 1.32494 1.42695 1.10951 1.20576 0.78085 0.76740 0.91579 1.90677 1.63583 1.51106 1.40751 1.22790 1.00000 0.98828 0.94264 0.83627 1.23018 0.92846 0.98633 1.04027 1.23623 0.97864 0.79936 1.02015 1.89148 1.28327 1.28263 1.86690 1.23626 0.81222 0.96300 1.01269 1.21744 0.88389 1.01053 0.88149 1.24023 0.97362 1.00210 0.97754 0.84513 0.91412 0.86741 0.86408 0.74237 0.89366 0.86427 0.91107 0.87205 0.89006 0.89500 0.87754 0.89135 0.90522 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.93 13.97 21.65 0.30 -54.62 16 2 C 0.05 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.91 44.06 27.74 68.60 1.90 45.97 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.23 -11.23 6.74 99.48 0.67 -10.56 16 7 C -0.53 -29.96 10.04 67.95 0.68 -29.28 16 8 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 9 S -0.17 -8.42 18.55 -56.49 -1.05 -9.47 16 10 C -0.11 -3.85 6.16 71.24 0.44 -3.41 16 11 C 0.54 16.62 7.85 87.66 0.69 17.30 16 12 O -0.56 -21.79 15.43 -3.04 -0.05 -21.84 16 13 N -0.68 -13.23 5.56 -442.52 -2.46 -15.69 16 14 C 0.11 1.78 5.92 44.99 0.27 2.04 16 15 H 0.12 2.56 7.40 -2.39 -0.02 2.55 16 16 C -0.16 -1.65 7.34 -8.69 -0.06 -1.72 16 17 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 18 C 0.12 1.09 5.48 87.73 0.48 1.57 16 19 N -0.62 -9.03 3.25 -801.21 -2.61 -11.64 16 20 C 0.54 9.84 7.18 87.66 0.63 10.47 16 21 O -0.58 -15.96 15.55 -3.02 -0.05 -16.01 16 22 C -0.14 -1.43 2.72 -10.52 -0.03 -1.46 16 23 H 0.15 0.52 7.87 -2.39 -0.02 0.50 16 24 C -0.15 -1.65 6.67 31.61 0.21 -1.44 16 25 C 0.04 0.46 7.63 72.48 0.55 1.02 16 26 O -0.40 -6.97 11.65 -148.98 -1.74 -8.70 16 27 C 0.05 0.54 6.64 72.48 0.48 1.02 16 28 C 0.13 2.02 6.85 86.54 0.59 2.62 16 29 C -0.17 -2.17 6.98 -9.88 -0.07 -2.24 16 30 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.12 3.64 8.14 -2.40 -0.02 3.62 16 34 H 0.42 5.39 8.83 -92.71 -0.82 4.57 16 35 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 36 H 0.12 0.36 7.07 -2.38 -0.02 0.34 16 37 H 0.07 1.25 6.50 -2.38 -0.02 1.24 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.98 6.73 -2.39 -0.02 0.97 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.44 7.88 -2.39 -0.02 1.42 16 Total: -1.00 -81.53 375.62 -0.24 -81.76 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.17 Total: 10.66 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.33 Total: -0.42 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -4.77 Total: -81.95 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -1.83 Total: -46.55 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.97 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.05 Total: -9.47 kcal Total: -81.53 -0.24 -81.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744556196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.577 kcal (2) G-P(sol) polarization free energy of solvation -81.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.68 seconds