Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 120.00224 * 2 1 4 4 H 1.48502 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46698 * 300.00337 * 3 2 1 6 6 H 1.48494 * 109.46977 * 60.00246 * 3 2 1 7 7 C 1.38804 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99570 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99904 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47037 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00217 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00162 * 180.02562 * 13 11 10 15 15 C 1.53502 * 114.20220 * 204.99757 * 14 13 11 16 16 N 1.47064 * 87.98261 * 220.34260 * 15 14 13 17 17 C 1.34784 * 136.05718 * 207.08409 * 16 15 14 18 18 O 1.21273 * 119.99714 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99927 * 180.02562 * 17 16 15 20 20 H 1.09006 * 110.80775 * 61.86609 * 19 17 16 21 21 C 1.54997 * 110.74756 * 298.54924 * 19 17 16 22 22 C 1.55825 * 102.78606 * 241.67357 * 21 19 17 23 23 H 1.09002 * 115.38765 * 158.11211 * 22 21 19 24 24 C 1.55827 * 105.32715 * 286.58696 * 22 21 19 25 25 C 1.56779 * 101.97431 * 73.13725 * 24 22 21 26 26 C 1.55814 * 110.74772 * 185.17602 * 19 17 16 27 27 H 1.08999 * 115.39292 * 319.49426 * 26 19 17 28 28 O 1.46534 * 101.24086 * 32.41802 * 22 21 19 29 29 C 1.47062 * 87.88723 * 27.34347 * 16 15 14 30 30 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47139 * 60.00294 * 10 9 7 32 32 H 1.08995 * 109.47173 * 299.99898 * 10 9 7 33 33 H 0.96999 * 119.99281 * 359.97438 * 13 11 10 34 34 H 1.09003 * 113.28353 * 338.05823 * 14 13 11 35 35 H 1.08997 * 113.46680 * 105.56770 * 15 14 13 36 36 H 1.09000 * 113.52163 * 335.12924 * 15 14 13 37 37 H 1.09000 * 110.74947 * 123.35288 * 21 19 17 38 38 H 1.08999 * 110.75293 * 359.97438 * 21 19 17 39 39 H 1.09001 * 110.74770 * 191.73815 * 24 22 21 40 40 H 1.08997 * 110.74987 * 315.08806 * 24 22 21 41 41 H 1.09003 * 110.49495 * 241.40944 * 25 24 22 42 42 H 1.08998 * 110.86034 * 118.15367 * 25 24 22 43 43 H 1.09004 * 113.46903 * 87.43642 * 29 16 15 44 44 H 1.08998 * 113.47064 * 217.87659 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0010 13 7 2.8440 -6.3432 0.0007 14 6 2.3302 -7.7151 0.0008 15 6 3.2976 -8.7494 0.5931 16 7 2.8938 -9.6666 -0.4832 17 6 2.8318 -11.0030 -0.6471 18 8 3.1688 -11.7407 0.2545 19 6 2.3437 -11.5804 -1.9507 20 1 2.9955 -11.2854 -2.7731 21 6 0.8807 -11.1503 -2.2282 22 6 0.1218 -12.5108 -2.2621 23 1 -0.9504 -12.4527 -2.0744 24 6 0.5288 -13.1759 -3.6113 25 6 2.0065 -13.6144 -3.3250 26 6 2.2361 -13.1322 -1.8612 27 1 3.0478 -13.6271 -1.3280 28 8 0.8947 -13.2932 -1.2938 29 6 2.5938 -8.4840 -1.3043 30 1 -0.4850 0.8400 0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1244 -3.7314 -0.8905 33 1 3.8008 -6.1835 0.0004 34 1 1.3092 -7.7928 0.3744 35 1 3.0104 -9.0931 1.5868 36 1 4.3437 -8.4484 0.5373 37 1 0.8034 -10.6410 -3.1888 38 1 0.5045 -10.5187 -1.4234 39 1 -0.1063 -14.0356 -3.8251 40 1 0.4887 -12.4528 -4.4259 41 1 2.6924 -13.1137 -4.0085 42 1 2.1108 -14.6971 -3.3959 43 1 3.4542 -8.1123 -1.8609 44 1 1.7071 -8.6016 -1.9272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745823578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = -60.129524 kcal Electronic energy + Delta-G solvation = -26582.559036 eV Core-core repulsion = 22628.076047 eV Total energy + Delta-G solvation = -3954.482989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58316 -40.51478 -38.95362 -37.74845 -33.86843 -32.82361 -32.47769 -31.52414 -30.11783 -29.90103 -28.16834 -26.40400 -25.54050 -23.76919 -22.31229 -21.66237 -20.73477 -20.63757 -19.21871 -17.91813 -17.67556 -17.20343 -16.85550 -16.44192 -16.18576 -15.76498 -15.32415 -14.93905 -14.84967 -14.61155 -14.31563 -14.14245 -13.62631 -13.41287 -13.27683 -13.09999 -12.96796 -12.59159 -12.53722 -12.23196 -12.12202 -12.04432 -11.92222 -11.58703 -11.43109 -11.32637 -11.10831 -11.07256 -10.96005 -10.80469 -10.34067 -10.06063 -9.86136 -9.54868 -9.17475 -9.11563 -9.03439 -8.30079 -6.56154 -6.26768 -3.97803 2.29041 2.29462 2.87533 2.98935 3.18272 3.25017 3.29059 3.40231 3.63351 3.85953 3.99877 4.09577 4.15381 4.24360 4.30891 4.37751 4.54699 4.62069 4.68845 4.76849 4.83615 4.89109 5.00842 5.03390 5.05201 5.08841 5.13611 5.29684 5.33298 5.38061 5.39808 5.50733 5.55220 5.57140 5.63015 5.66618 5.78916 5.81065 6.05654 6.15961 6.40351 7.32477 7.51561 7.55486 7.82146 8.30442 8.43308 9.18959 10.80677 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.001836 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.532362 B =15246.577775 C =15740.307127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.512 6.512 13 N -0.726 5.726 14 C 0.118 3.882 15 C 0.094 3.906 16 N -0.644 5.644 17 C 0.558 3.442 18 O -0.531 6.531 19 C -0.134 4.134 20 H 0.109 0.891 21 C -0.140 4.140 22 C 0.059 3.941 23 H 0.132 0.868 24 C -0.149 4.149 25 C -0.150 4.150 26 C 0.088 3.912 27 H 0.138 0.862 28 O -0.363 6.363 29 C 0.081 3.919 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.402 0.598 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.243 -24.529 -7.975 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.385 6.385 13 N -0.380 5.380 14 C 0.011 3.989 15 C -0.029 4.029 16 N -0.381 5.381 17 C 0.348 3.652 18 O -0.407 6.407 19 C -0.156 4.156 20 H 0.127 0.873 21 C -0.178 4.178 22 C 0.001 3.999 23 H 0.150 0.850 24 C -0.186 4.186 25 C -0.187 4.187 26 C 0.029 3.971 27 H 0.155 0.845 28 O -0.282 6.282 29 C -0.044 4.044 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.237 0.763 34 H 0.150 0.850 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.157 -25.521 -7.303 27.041 hybrid contribution 2.638 1.616 -0.297 3.108 sum 7.795 -23.904 -7.600 26.267 Atomic orbital electron populations 1.70018 1.05957 1.27420 1.46818 1.25000 0.95038 0.99080 0.94493 0.86110 0.79573 0.81842 0.77931 1.19608 1.20561 1.20547 1.22900 0.94941 0.91569 1.58998 0.90820 1.85420 1.04743 0.96412 1.96738 1.23540 1.06755 0.95061 1.05133 1.20403 0.86515 0.86294 0.74534 1.90717 1.15338 1.85484 1.46961 1.45843 1.10121 1.04422 1.77660 1.22691 1.00160 0.80572 0.95480 1.23356 0.99322 0.86546 0.93723 1.49261 1.66261 1.03509 1.19044 1.19875 0.76984 0.79145 0.89177 1.90723 1.49086 1.57617 1.43274 1.23039 0.98800 0.97868 0.95875 0.87264 1.23314 0.92587 0.98497 1.03375 1.24715 0.97399 0.89653 0.88119 0.85000 1.23574 0.96306 1.01237 0.97512 1.23577 0.96847 1.02159 0.96154 1.24503 0.87642 0.91856 0.93051 0.84463 1.90160 1.17784 1.71972 1.48238 1.23741 1.01761 0.82498 0.96407 0.92187 0.89002 0.89023 0.76308 0.84955 0.89527 0.89323 0.89392 0.89996 0.90509 0.90256 0.90432 0.90275 0.89153 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.55 13.22 55.49 0.73 -24.81 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 20.88 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.76 9.50 30.94 0.29 -14.46 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -2.83 6.16 36.00 0.22 -2.61 16 11 C 0.54 8.81 7.85 -10.99 -0.09 8.73 16 12 O -0.51 -10.54 15.45 5.56 0.09 -10.45 16 13 N -0.73 -7.86 5.38 -53.49 -0.29 -8.15 16 14 C 0.12 1.16 4.63 -67.68 -0.31 0.85 16 15 C 0.09 0.83 8.38 -8.51 -0.07 0.76 16 16 N -0.64 -6.22 3.62 -185.08 -0.67 -6.89 16 17 C 0.56 6.35 7.26 -10.98 -0.08 6.27 16 18 O -0.53 -8.10 16.67 5.56 0.09 -8.01 16 19 C -0.13 -1.10 2.75 -89.21 -0.25 -1.34 16 20 H 0.11 0.65 7.80 -51.93 -0.41 0.25 16 21 C -0.14 -1.02 5.10 -24.17 -0.12 -1.14 16 22 C 0.06 0.45 5.66 -23.71 -0.13 0.31 16 23 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 24 C -0.15 -0.85 6.66 -23.18 -0.15 -1.00 16 25 C -0.15 -0.89 6.57 -23.18 -0.15 -1.04 16 26 C 0.09 0.77 4.63 -23.72 -0.11 0.66 16 27 H 0.14 1.26 7.74 -51.93 -0.40 0.86 16 28 O -0.36 -4.07 11.65 -35.23 -0.41 -4.48 16 29 C 0.08 0.64 8.00 -8.38 -0.07 0.58 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 32 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 33 H 0.40 3.11 8.76 -40.82 -0.36 2.75 16 34 H 0.13 1.58 7.45 -51.93 -0.39 1.20 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.09 0.47 7.78 -51.93 -0.40 0.06 16 38 H 0.08 0.71 7.55 -51.93 -0.39 0.32 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.35 7.78 -51.93 -0.40 -0.06 16 41 H 0.08 0.35 7.80 -51.93 -0.41 -0.06 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.65 7.17 -51.93 -0.37 0.28 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -36.72 377.15 -9.58 -46.30 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.45 Total: 0.23 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.12 Total: -1.51 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.22 Total: -39.85 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.23 Total: -22.94 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.72 -9.58 -46.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745823578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.834 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds