Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 120.00224 * 2 1 4 4 H 1.48502 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46698 * 300.00337 * 3 2 1 6 6 H 1.48494 * 109.46977 * 60.00246 * 3 2 1 7 7 C 1.38804 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99570 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99904 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47037 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00217 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00162 * 180.02562 * 13 11 10 15 15 C 1.53502 * 114.20220 * 204.99757 * 14 13 11 16 16 N 1.47064 * 87.98261 * 220.34260 * 15 14 13 17 17 C 1.34784 * 136.05718 * 207.08409 * 16 15 14 18 18 O 1.21273 * 119.99714 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99927 * 180.02562 * 17 16 15 20 20 H 1.09006 * 110.80775 * 61.86609 * 19 17 16 21 21 C 1.54997 * 110.74756 * 298.54924 * 19 17 16 22 22 C 1.55825 * 102.78606 * 241.67357 * 21 19 17 23 23 H 1.09002 * 115.38765 * 158.11211 * 22 21 19 24 24 C 1.55827 * 105.32715 * 286.58696 * 22 21 19 25 25 C 1.56779 * 101.97431 * 73.13725 * 24 22 21 26 26 C 1.55814 * 110.74772 * 185.17602 * 19 17 16 27 27 H 1.08999 * 115.39292 * 319.49426 * 26 19 17 28 28 O 1.46534 * 101.24086 * 32.41802 * 22 21 19 29 29 C 1.47062 * 87.88723 * 27.34347 * 16 15 14 30 30 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47139 * 60.00294 * 10 9 7 32 32 H 1.08995 * 109.47173 * 299.99898 * 10 9 7 33 33 H 0.96999 * 119.99281 * 359.97438 * 13 11 10 34 34 H 1.09003 * 113.28353 * 338.05823 * 14 13 11 35 35 H 1.08997 * 113.46680 * 105.56770 * 15 14 13 36 36 H 1.09000 * 113.52163 * 335.12924 * 15 14 13 37 37 H 1.09000 * 110.74947 * 123.35288 * 21 19 17 38 38 H 1.08999 * 110.75293 * 359.97438 * 21 19 17 39 39 H 1.09001 * 110.74770 * 191.73815 * 24 22 21 40 40 H 1.08997 * 110.74987 * 315.08806 * 24 22 21 41 41 H 1.09003 * 110.49495 * 241.40944 * 25 24 22 42 42 H 1.08998 * 110.86034 * 118.15367 * 25 24 22 43 43 H 1.09004 * 113.46903 * 87.43642 * 29 16 15 44 44 H 1.08998 * 113.47064 * 217.87659 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0010 13 7 2.8440 -6.3432 0.0007 14 6 2.3302 -7.7151 0.0008 15 6 3.2976 -8.7494 0.5931 16 7 2.8938 -9.6666 -0.4832 17 6 2.8318 -11.0030 -0.6471 18 8 3.1688 -11.7407 0.2545 19 6 2.3437 -11.5804 -1.9507 20 1 2.9955 -11.2854 -2.7731 21 6 0.8807 -11.1503 -2.2282 22 6 0.1218 -12.5108 -2.2621 23 1 -0.9504 -12.4527 -2.0744 24 6 0.5288 -13.1759 -3.6113 25 6 2.0065 -13.6144 -3.3250 26 6 2.2361 -13.1322 -1.8612 27 1 3.0478 -13.6271 -1.3280 28 8 0.8947 -13.2932 -1.2938 29 6 2.5938 -8.4840 -1.3043 30 1 -0.4850 0.8400 0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1244 -3.7314 -0.8905 33 1 3.8008 -6.1835 0.0004 34 1 1.3092 -7.7928 0.3744 35 1 3.0104 -9.0931 1.5868 36 1 4.3437 -8.4484 0.5373 37 1 0.8034 -10.6410 -3.1888 38 1 0.5045 -10.5187 -1.4234 39 1 -0.1063 -14.0356 -3.8251 40 1 0.4887 -12.4528 -4.4259 41 1 2.6924 -13.1137 -4.0085 42 1 2.1108 -14.6971 -3.3959 43 1 3.4542 -8.1123 -1.8609 44 1 1.7071 -8.6016 -1.9272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745823578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = -87.864182 kcal Electronic energy + Delta-G solvation = -26583.761701 eV Core-core repulsion = 22628.076047 eV Total energy + Delta-G solvation = -3955.685654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.28435 -41.34347 -40.10249 -38.73550 -34.99368 -34.55785 -33.53595 -32.15624 -31.10244 -30.67196 -29.18686 -27.62988 -27.10635 -24.48726 -23.01833 -22.35338 -21.82983 -21.28292 -20.06062 -19.72128 -18.45205 -18.00632 -17.87318 -17.47619 -17.05971 -16.85684 -16.44434 -16.38600 -16.14889 -15.72403 -15.22253 -15.02108 -14.77763 -14.68659 -14.24166 -14.19792 -13.77819 -13.60122 -13.48407 -13.26810 -13.13135 -12.90385 -12.81513 -12.58658 -12.56762 -12.50539 -12.27993 -12.05650 -11.91952 -11.69227 -11.54928 -11.13920 -11.06202 -10.97414 -10.77597 -10.23092 -10.15499 -9.87807 -8.63050 -8.32839 -6.09722 1.25376 1.42791 1.42964 1.48113 1.55532 1.58486 1.68404 2.28619 2.37474 2.82782 3.01788 3.14535 3.32123 3.34981 3.44170 3.62755 3.70359 3.82860 3.87676 3.94825 4.06745 4.09147 4.19994 4.31731 4.34819 4.37220 4.44351 4.49394 4.53554 4.57736 4.58556 4.69364 4.83234 4.89935 4.95094 4.98200 5.06256 5.12862 5.20692 5.41613 5.45184 5.61052 6.22442 6.45467 6.58229 6.98161 7.09343 7.23737 8.76357 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.001836 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.532362 B =15246.577775 C =15740.307127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.541 3.459 12 O -0.560 6.560 13 N -0.696 5.696 14 C 0.113 3.887 15 C 0.097 3.903 16 N -0.646 5.646 17 C 0.551 3.449 18 O -0.581 6.581 19 C -0.128 4.128 20 H 0.140 0.860 21 C -0.135 4.135 22 C 0.048 3.952 23 H 0.137 0.863 24 C -0.141 4.141 25 C -0.142 4.142 26 C 0.076 3.924 27 H 0.122 0.878 28 O -0.405 6.405 29 C 0.093 3.907 30 H 0.270 0.730 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.423 0.577 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 -24.265 -10.024 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.691 4.691 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.327 3.673 12 O -0.438 6.438 13 N -0.350 5.350 14 C 0.006 3.994 15 C -0.027 4.027 16 N -0.381 5.381 17 C 0.342 3.658 18 O -0.461 6.461 19 C -0.149 4.149 20 H 0.158 0.842 21 C -0.173 4.173 22 C -0.009 4.009 23 H 0.154 0.846 24 C -0.179 4.179 25 C -0.179 4.179 26 C 0.018 3.982 27 H 0.139 0.861 28 O -0.324 6.324 29 C -0.031 4.031 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.261 0.739 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.754 -25.268 -9.370 28.043 hybrid contribution 1.878 1.410 0.407 2.384 sum 9.633 -23.858 -8.963 27.246 Atomic orbital electron populations 1.70182 1.07943 1.28467 1.48207 1.26106 0.95938 1.03297 0.93905 0.84929 0.78717 0.76525 0.77934 1.17913 1.20053 1.20227 1.23245 0.95396 0.92008 1.58474 0.89756 1.85602 1.10644 0.99281 1.97054 1.23380 1.03531 0.94039 1.07190 1.20062 0.86176 0.86579 0.74451 1.90716 1.17460 1.85959 1.49640 1.45438 1.10502 1.03599 1.75481 1.22625 0.99291 0.79912 0.97565 1.23441 1.00506 0.85667 0.93066 1.49294 1.65537 1.03553 1.19680 1.20514 0.76242 0.79230 0.89801 1.90696 1.51433 1.58821 1.45132 1.23098 0.99692 0.97187 0.94905 0.84190 1.23323 0.91707 0.98166 1.04063 1.24967 0.97540 0.89698 0.88695 0.84555 1.23575 0.95901 1.01660 0.96746 1.23559 0.97542 1.02468 0.94337 1.24604 0.86499 0.92503 0.94618 0.86062 1.90122 1.19323 1.72884 1.50103 1.23799 1.03312 0.80710 0.95276 0.92082 0.87069 0.86598 0.73879 0.87503 0.90834 0.86375 0.86514 0.91971 0.90337 0.88063 0.88142 0.90207 0.86193 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.73 13.22 21.65 0.29 -54.44 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 42.37 29.55 68.60 2.03 44.39 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -29.78 9.50 67.96 0.65 -29.13 16 8 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 10 C -0.13 -4.57 6.16 71.23 0.44 -4.13 16 11 C 0.54 17.09 7.85 87.66 0.69 17.78 16 12 O -0.56 -23.33 15.45 -3.04 -0.05 -23.38 16 13 N -0.70 -13.24 5.38 -441.52 -2.38 -15.61 16 14 C 0.11 2.04 4.63 45.55 0.21 2.25 16 15 C 0.10 1.53 8.38 83.18 0.70 2.23 16 16 N -0.65 -11.42 3.62 -857.86 -3.11 -14.52 16 17 C 0.55 12.20 7.26 87.66 0.64 12.83 16 18 O -0.58 -18.25 16.67 -3.01 -0.05 -18.30 16 19 C -0.13 -1.87 2.75 -9.88 -0.03 -1.90 16 20 H 0.14 1.15 7.80 -2.38 -0.02 1.13 16 21 C -0.13 -1.73 5.10 32.25 0.16 -1.57 16 22 C 0.05 0.69 5.66 32.55 0.18 0.87 16 23 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 24 C -0.14 -1.27 6.66 32.89 0.22 -1.05 16 25 C -0.14 -1.38 6.57 32.89 0.22 -1.17 16 26 C 0.08 1.30 4.63 32.54 0.15 1.45 16 27 H 0.12 2.36 7.74 -2.39 -0.02 2.34 16 28 O -0.40 -9.28 11.65 -148.98 -1.74 -11.02 16 29 C 0.09 1.20 8.00 83.27 0.67 1.87 16 30 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 32 H 0.12 3.53 8.14 -2.40 -0.02 3.51 16 33 H 0.42 4.80 8.76 -92.71 -0.81 3.99 16 34 H 0.11 2.58 7.45 -2.39 -0.02 2.56 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.22 8.13 -2.39 -0.02 1.20 16 37 H 0.12 0.82 7.78 -2.39 -0.02 0.80 16 38 H 0.06 1.05 7.55 -2.39 -0.02 1.03 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.49 7.78 -2.39 -0.02 0.47 16 41 H 0.10 0.53 7.80 -2.39 -0.02 0.51 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.15 7.17 -2.39 -0.02 1.13 16 Total: -1.00 -84.80 377.15 -0.60 -85.40 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.21 Total: 15.22 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.36 Total: 1.47 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -5.20 Total: -84.58 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -1.83 Total: -52.70 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -84.80 -0.60 -85.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745823578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.464 kcal (2) G-P(sol) polarization free energy of solvation -84.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds