Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86802 * 119.99768 * 2 1 4 4 H 1.48498 * 109.47131 * 240.00211 * 3 2 1 5 5 H 1.48501 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46877 * 120.00291 * 3 2 1 7 7 C 1.38798 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00183 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99787 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46751 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00220 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99687 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99699 * 179.72193 * 13 11 10 15 15 C 1.53005 * 109.47116 * 175.41744 * 14 13 11 16 16 H 1.09001 * 112.96379 * 309.20387 * 15 14 13 17 17 C 1.53944 * 113.77166 * 177.52366 * 15 14 13 18 18 C 1.53943 * 86.29125 * 222.09420 * 17 15 14 19 19 N 1.47582 * 86.11832 * 23.60555 * 18 17 15 20 20 C 1.34775 * 134.49422 * 155.36205 * 19 18 17 21 21 O 1.21288 * 119.99922 * 185.05271 * 20 19 18 22 22 C 1.50700 * 119.99918 * 5.05094 * 20 19 18 23 23 C 1.53002 * 119.80623 * 250.98089 * 22 20 19 24 24 C 1.52995 * 60.65449 * 247.69202 * 23 22 20 25 25 H 1.08996 * 120.24809 * 112.14141 * 24 23 22 26 26 C 1.54478 * 118.06462 * 269.59129 * 24 23 22 27 27 O 1.44433 * 104.80359 * 86.83049 * 26 24 23 28 28 C 1.43874 * 105.56430 * 319.94177 * 27 26 24 29 29 H 0.96998 * 119.99977 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47189 * 60.00233 * 10 9 7 31 31 H 1.08999 * 109.47435 * 299.99857 * 10 9 7 32 32 H 0.96995 * 119.99927 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.47537 * 295.41500 * 14 13 11 34 34 H 1.08996 * 109.47309 * 55.41997 * 14 13 11 35 35 H 1.08999 * 113.73796 * 336.43680 * 17 15 14 36 36 H 1.08997 * 113.73888 * 107.63833 * 17 15 14 37 37 H 1.08993 * 113.77291 * 137.90700 * 18 17 15 38 38 H 1.09001 * 113.76963 * 269.19442 * 18 17 15 39 39 H 1.09001 * 117.43178 * 355.36722 * 23 22 20 40 40 H 1.09001 * 117.43330 * 140.01404 * 23 22 20 41 41 H 1.09002 * 110.37487 * 205.65839 * 26 24 23 42 42 H 1.08998 * 110.37645 * 327.89044 * 26 24 23 43 43 H 1.08997 * 109.56025 * 281.16983 * 28 27 26 44 44 H 1.08996 * 110.91941 * 159.01606 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 0.0048 15 6 3.4979 -8.6972 -0.1112 16 1 4.1689 -8.4646 -0.9381 17 6 3.0729 -10.1758 -0.0542 18 6 4.2980 -10.3893 0.8532 19 7 4.1908 -8.9512 1.1669 20 6 4.5723 -8.1797 2.2040 21 8 4.2649 -7.0068 2.2326 22 6 5.3809 -8.7744 3.3281 23 6 4.7373 -8.9823 4.7006 24 6 5.8469 -7.9408 4.5427 25 1 5.6217 -6.8791 4.6428 26 6 7.3062 -8.3933 4.7708 27 8 7.7413 -8.8962 3.4887 28 6 6.6182 -9.6216 2.9572 29 1 -0.4850 0.8400 0.0004 30 1 3.1245 -3.7313 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 3.8010 -6.1834 -0.0004 33 1 1.7929 -7.8980 0.9351 34 1 1.6543 -7.8532 -0.8388 35 1 2.1201 -10.3393 0.4493 36 1 3.1402 -10.6890 -1.0134 37 1 4.1053 -11.0405 1.7057 38 1 5.2052 -10.6560 0.3109 39 1 3.7203 -8.6154 4.8391 40 1 4.9820 -9.8995 5.2362 41 1 7.9226 -7.5475 5.0756 42 1 7.3460 -9.1814 5.5228 43 1 6.5614 -10.6028 3.4284 44 1 6.6977 -9.7235 1.8749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747627613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -38.959174 kcal Electronic energy + Delta-G solvation = -27172.774239 eV Core-core repulsion = 23219.209266 eV Total energy + Delta-G solvation = -3953.564973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41057 -40.22775 -38.72880 -37.80743 -35.04536 -34.21339 -32.35047 -30.91824 -29.83828 -28.96344 -27.62368 -25.90352 -25.39987 -24.08827 -23.43099 -21.78197 -21.03033 -20.19124 -19.03782 -17.85943 -17.53425 -16.89839 -16.56247 -16.07918 -15.98681 -15.89847 -15.19149 -15.09647 -14.79927 -14.73283 -14.29699 -14.24699 -13.85022 -13.61117 -13.24217 -13.02146 -12.98422 -12.70121 -12.55421 -12.34930 -12.25318 -11.97035 -11.70914 -11.59313 -11.40377 -11.14830 -10.97676 -10.96281 -10.72607 -10.69252 -10.19032 -9.83446 -9.73706 -9.23592 -9.08759 -8.98612 -8.68070 -8.13830 -6.40091 -6.13864 -3.83215 2.12854 2.33344 2.96472 3.15698 3.28402 3.29616 3.32664 3.38826 3.47887 3.75522 3.89130 3.95874 3.99749 4.02291 4.28528 4.41904 4.51106 4.55250 4.59981 4.77722 4.80640 4.83658 4.90252 4.96883 5.11415 5.11965 5.20767 5.21705 5.25226 5.29563 5.34971 5.41273 5.56230 5.66968 5.68330 5.84261 5.95084 6.06174 6.20939 6.31312 6.78431 7.32022 7.67253 7.85514 7.94276 8.43299 8.79706 9.31189 10.93625 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002611 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.628567 B =10722.645709 C =12225.041555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.071 0.929 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.526 6.526 13 N -0.724 5.724 14 C 0.125 3.875 15 C 0.124 3.876 16 H 0.102 0.898 17 C -0.142 4.142 18 C 0.100 3.900 19 N -0.641 5.641 20 C 0.578 3.422 21 O -0.511 6.511 22 C -0.207 4.207 23 C -0.107 4.107 24 C -0.157 4.157 25 H 0.135 0.865 26 C 0.073 3.927 27 O -0.368 6.368 28 C 0.091 3.909 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.542 -28.475 5.598 32.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.682 4.682 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.322 3.678 12 O -0.402 6.402 13 N -0.378 5.378 14 C -0.001 4.001 15 C 0.021 3.979 16 H 0.120 0.880 17 C -0.180 4.180 18 C -0.023 4.023 19 N -0.379 5.379 20 C 0.366 3.634 21 O -0.385 6.385 22 C -0.210 4.210 23 C -0.144 4.144 24 C -0.175 4.175 25 H 0.153 0.847 26 C -0.004 4.004 27 O -0.287 6.287 28 C 0.014 3.986 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.498 -27.883 5.681 31.079 hybrid contribution 2.302 1.325 0.105 2.658 sum 14.800 -26.558 5.786 30.949 Atomic orbital electron populations 1.70018 1.05927 1.27432 1.47085 1.24985 0.95022 0.98959 0.94639 0.86231 0.79227 0.81280 0.78797 1.19959 1.20838 1.19961 1.22848 0.94906 0.91762 1.58683 0.91042 1.85309 1.05231 0.96239 1.96702 1.23493 1.06297 0.95455 1.04827 1.20208 0.86371 0.86289 0.74912 1.90675 1.15406 1.85698 1.48394 1.45795 1.10077 1.04762 1.77158 1.21354 0.94727 0.81273 1.02708 1.23182 0.93260 0.95738 0.85723 0.88005 1.23548 0.99095 0.94277 1.01125 1.23187 0.98345 0.82306 0.98444 1.50115 1.59517 1.09963 1.18262 1.18750 0.78269 0.85146 0.81194 1.90818 1.54504 1.15502 1.77638 1.23263 1.01818 1.05925 0.90025 1.23161 0.98462 1.00048 0.92738 1.24390 0.94275 0.99910 0.98950 0.84738 1.23010 0.92145 0.99164 0.86048 1.89097 1.35086 1.71196 1.33292 1.22680 0.82284 0.93457 1.00206 0.92221 0.89216 0.89527 0.76619 0.91547 0.90097 0.88291 0.88968 0.89685 0.89504 0.87069 0.87647 0.87922 0.91449 0.91443 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.12 13.22 55.49 0.73 -26.38 16 2 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 3 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.53 -16.02 9.50 30.94 0.29 -15.72 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 10 C -0.15 -3.41 6.16 36.01 0.22 -3.19 16 11 C 0.54 11.30 7.85 -10.98 -0.09 11.21 16 12 O -0.53 -12.94 15.86 5.56 0.09 -12.85 16 13 N -0.72 -11.58 4.43 -60.29 -0.27 -11.84 16 14 C 0.12 1.57 5.21 -4.04 -0.02 1.55 16 15 C 0.12 1.01 4.29 -66.86 -0.29 0.72 16 16 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 17 C -0.14 -0.65 7.86 -25.81 -0.20 -0.85 16 18 C 0.10 0.43 7.40 -2.98 -0.02 0.40 16 19 N -0.64 -5.54 3.42 -171.19 -0.59 -6.12 16 20 C 0.58 6.74 7.57 -10.99 -0.08 6.66 16 21 O -0.51 -8.24 15.14 5.55 0.08 -8.16 16 22 C -0.21 -1.82 2.68 -154.09 -0.41 -2.24 16 23 C -0.11 -0.76 9.89 -26.73 -0.26 -1.02 16 24 C -0.16 -1.36 6.90 -89.05 -0.61 -1.98 16 25 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 26 C 0.07 0.54 7.45 37.93 0.28 0.82 16 27 O -0.37 -3.54 11.62 -35.23 -0.41 -3.95 16 28 C 0.09 0.66 6.70 37.93 0.25 0.91 16 29 H 0.27 7.76 8.31 -40.82 -0.34 7.43 16 30 H 0.09 2.00 8.14 -51.92 -0.42 1.57 16 31 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.40 5.92 7.67 -40.82 -0.31 5.61 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.22 8.06 -51.93 -0.42 -0.19 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.64 7.14 -51.93 -0.37 0.27 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -39.54 383.00 -9.42 -48.96 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.56 Total: 1.98 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.04 Total: -0.65 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.12 Total: -44.35 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.24 Total: -24.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.54 -9.42 -48.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747627613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.001 kcal (2) G-P(sol) polarization free energy of solvation -39.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds